Genomic map of Ralstonia phage DU_RP_I (MF979559)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF979559
Definition
Ralstonia phage DU_RP_I, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Gyeongsanvirus; Ralstonia virus DURPI.
DB of origin
NUCCORE
Length
40657
Host Name
Ralstonia solanacearum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
39
%GC
58.78
Number of singletons
5
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATS93376.1 MF979559_p15 hypothetical protein phrog_1233 unknown function unknown function 1 14146 14424
ATS93398.1 MF979559_p37 hypothetical protein phrog_891 terminase small subunit head and packaging 1 36659 36961
ATS93362.1 MF979559_p1 integrase phrog_1 integrase integration and excision 1 2121 3194
ATS93380.1 MF979559_p19 hypothetical protein phrog_2252 endolysin; inhibits RNA polymerase lysis 1 15815 16282
ATS93386.1 MF979559_p25 major capsid protein phrog_27239 major head protein head and packaging 1 20552 20719
ATS93368.1 MF979559_p7 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 7626 8051
ATS93390.1 MF979559_p29 tail tubular protein A phrog_446 tail protein tail 1 22587 23174
ATS93397.1 MF979559_p36 hypothetical protein singleton unknown function unknown function 1 36487 36657
ATS93392.1 MF979559_p31 hypothetical protein phrog_308 internal virion protein head and packaging 1 25616 25978
ATS93393.1 MF979559_p32 hypothetical protein phrog_805 internal virion protein head and packaging 1 26026 26544
ATS93370.1 MF979559_p9 hypothetical protein singleton unknown function unknown function 1 8888 9181
ATS93371.1 MF979559_p10 DNA primase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9117 10775
ATS93391.1 MF979559_p30 tail tubular protein B phrog_457 tail protein tail 1 23176 25530
ATS93365.1 MF979559_p4 restriction endonuclease phrog_3322 endonuclease DNA, RNA and nucleotide metabolism 1 6230 6646
ATS93378.1 MF979559_p17 exonuclease-like protein phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14668 15420
ATS93374.1 MF979559_p13 DNA polymerase phrog_6375 DNA polymerase DNA, RNA and nucleotide metabolism 1 13470 13874
ATS93372.1 MF979559_p11 hypothetical protein singleton unknown function unknown function 1 10904 11545
ATS93389.1 MF979559_p28 hypothetical protein singleton unknown function unknown function 1 22089 22577
ATS93394.1 MF979559_p33 internal virion protein C phrog_23202 internal virion protein head and packaging 1 26545 28887
ATS93373.1 MF979559_p12 DNA polymerase-like protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11736 13163
ATS93384.1 MF979559_p23 capsid assembly protein phrog_1052 head assembly head and packaging 1 18755 19582
ATS93385.1 MF979559_p24 hypothetical protein phrog_28107 unknown function unknown function 1 19592 19978
ATS93400.1 MF979559_p39 DNA maturase B phrog_38 terminase large subunit head and packaging 1 37545 39230
ATS93375.1 MF979559_p14 hypothetical protein phrog_1334 unknown function unknown function 1 13898 14113
ATS93388.1 MF979559_p27 major capsid protein phrog_267 major head protein head and packaging 1 21316 22011
ATS93382.1 MF979559_p21 hypothetical protein phrog_4970 unknown function unknown function 1 16650 16841
ATS93387.1 MF979559_p26 recombination endonuclease VII phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism 1 20765 21199
ATS93363.1 MF979559_p2 HNH endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 3204 3512
ATS93377.1 MF979559_p16 hypothetical protein phrog_22241 unknown function unknown function 1 14466 14687
ATS93395.1 MF979559_p34 internal virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 28887 33608
ATS93364.1 MF979559_p3 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3628 6174
ATS93399.1 MF979559_p38 hypothetical protein phrog_3322 endonuclease DNA, RNA and nucleotide metabolism 1 37187 37555
ATS93369.1 MF979559_p8 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 8053 8505
ATS93383.1 MF979559_p22 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 17060 18619
ATS93366.1 MF979559_p5 hypothetical protein singleton unknown function unknown function 1 6748 6909
ATS93379.1 MF979559_p18 hypothetical protein phrog_3322 endonuclease DNA, RNA and nucleotide metabolism 1 15387 15836
ATS93367.1 MF979559_p6 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6917 7606
ATS93381.1 MF979559_p20 hypothetical protein phrog_4276 unknown function unknown function 1 16373 16615
ATS93396.1 MF979559_p35 bacteriolytic protein phrog_19253 unknown function unknown function 1 33914 36352