| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF979561 |
Definition |
Pectobacterium phage DU_PP_II, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Unyawovirus; Pectobacterium virus DUPPII. |
DB of origin |
NUCCORE |
Length |
40142 |
Host Name |
Pectobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
42 |
%GC |
47.91 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATS93688.1 | MF979561_p21 | HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 17457 | 17666 |
| ATS93671.1 | MF979561_p4 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3633 | 6365 |
| ATS93707.1 | MF979561_p40 | hypothetical protein | phrog_1327 | Rz-like spanin | lysis | 1 | 37039 | 37488 |
| ATS93690.1 | MF979561_p23 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 17868 | 18779 |
| ATS93670.1 | MF979561_p3 | protein kinase | phrog_15752 | protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE | other | 1 | 2521 | 3582 |
| ATS93693.1 | MF979561_p26 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 19595 | 19894 |
| ATS93675.1 | MF979561_p8 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8731 | 8991 |
| ATS93700.1 | MF979561_p33 | internal virion protein | phrog_308 | internal virion protein | head and packaging | 1 | 26975 | 27382 |
| ATS93672.1 | MF979561_p5 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 6485 | 6871 |
| ATS93703.1 | MF979561_p36 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30314 | 34300 |
| ATS93678.1 | MF979561_p11 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10127 | 10837 |
| ATS93686.1 | MF979561_p19 | portal protein | phrog_27296 | unknown function | unknown function | 1 | 16979 | 17164 |
| ATS93695.1 | MF979561_p28 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 21620 | 22543 |
| ATS93674.1 | MF979561_p7 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7421 | 8503 |
| ATS93696.1 | MF979561_p29 | capsid and scaffold protein | phrog_267 | major head protein | head and packaging | 1 | 22653 | 23675 |
| ATS93698.1 | MF979561_p31 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23895 | 24485 |
| ATS93681.1 | MF979561_p14 | hypothetical protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11882 | 13603 |
| ATS93701.1 | MF979561_p34 | capsid scaffolding protein | phrog_805 | internal virion protein | head and packaging | 1 | 27385 | 28008 |
| ATS93699.1 | MF979561_p32 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24500 | 26884 |
| ATS93682.1 | MF979561_p15 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 13734 | 13946 |
| ATS93705.1 | MF979561_p38 | holin | phrog_920 | holin | lysis | 1 | 36446 | 36652 |
| ATS93709.1 | MF979561_p42 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 39538 | 39687 |
| ATS93708.1 | MF979561_p41 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 37481 | 39253 |
| ATS93668.1 | MF979561_p1 | serine recombinase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1724 | 2155 |
| ATS93692.1 | MF979561_p25 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 19304 | 19570 |
| ATS93694.1 | MF979561_p27 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 19917 | 21527 |
| ATS93706.1 | MF979561_p39 | DNA maturase A | phrog_1351 | terminase small subunit | head and packaging | 1 | 36655 | 36930 |
| ATS93691.1 | MF979561_p24 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 19053 | 19301 |
| ATS93687.1 | MF979561_p20 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17167 | 17457 |
| ATS93702.1 | MF979561_p35 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 28020 | 30293 |
| ATS93683.1 | MF979561_p16 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13966 | 14277 |
| ATS93697.1 | MF979561_p30 | major capsid protein | phrog_12582 | head protein | head and packaging | 1 | 23675 | 23821 |
| ATS93679.1 | MF979561_p12 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10840 | 11289 |
| ATS93685.1 | MF979561_p18 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 14848 | 16962 |
| ATS93676.1 | MF979561_p9 | hypothetical protein | phrog_4317 | unknown function | unknown function | 1 | 9209 | 9748 |
| ATS93677.1 | MF979561_p10 | inhibitor of host bacterial RNA polymerase | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9872 | 10060 |
| ATS93684.1 | MF979561_p17 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 14345 | 14848 |
| ATS93673.1 | MF979561_p6 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6924 | 7085 |
| ATS93689.1 | MF979561_p22 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 17666 | 17875 |
| ATS93680.1 | MF979561_p13 | endolysin | phrog_822 | amidase | lysis | 1 | 11307 | 11762 |
| ATS93669.1 | MF979561_p2 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 2146 | 2361 |
| ATS93704.1 | MF979561_p37 | tail fiber protein | phrog_13980 | tail fiber protein | tail | 1 | 34365 | 36431 |