Genomic map of Pectobacterium phage DU_PP_II (MF979561)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF979561
Definition
Pectobacterium phage DU_PP_II, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Unyawovirus; Pectobacterium virus DUPPII.
DB of origin
NUCCORE
Length
40142
Host Name
Pectobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
42
%GC
47.91
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATS93688.1 MF979561_p21 HNS binding protein phrog_1334 unknown function unknown function 1 17457 17666
ATS93671.1 MF979561_p4 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3633 6365
ATS93707.1 MF979561_p40 hypothetical protein phrog_1327 Rz-like spanin lysis 1 37039 37488
ATS93690.1 MF979561_p23 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17868 18779
ATS93670.1 MF979561_p3 protein kinase phrog_15752 protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE other 1 2521 3582
ATS93693.1 MF979561_p26 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 19595 19894
ATS93675.1 MF979561_p8 hypothetical protein phrog_1777 unknown function unknown function 1 8731 8991
ATS93700.1 MF979561_p33 internal virion protein phrog_308 internal virion protein head and packaging 1 26975 27382
ATS93672.1 MF979561_p5 hypothetical protein phrog_9238 unknown function unknown function 1 6485 6871
ATS93703.1 MF979561_p36 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 30314 34300
ATS93678.1 MF979561_p11 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 10127 10837
ATS93686.1 MF979561_p19 portal protein phrog_27296 unknown function unknown function 1 16979 17164
ATS93695.1 MF979561_p28 capsid assembly protein phrog_1052 head assembly head and packaging 1 21620 22543
ATS93674.1 MF979561_p7 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7421 8503
ATS93696.1 MF979561_p29 capsid and scaffold protein phrog_267 major head protein head and packaging 1 22653 23675
ATS93698.1 MF979561_p31 tail tubular protein A phrog_446 tail protein tail 1 23895 24485
ATS93681.1 MF979561_p14 hypothetical protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11882 13603
ATS93701.1 MF979561_p34 capsid scaffolding protein phrog_805 internal virion protein head and packaging 1 27385 28008
ATS93699.1 MF979561_p32 tail tubular protein B phrog_457 tail protein tail 1 24500 26884
ATS93682.1 MF979561_p15 hypothetical protein phrog_1950 unknown function unknown function 1 13734 13946
ATS93705.1 MF979561_p38 holin phrog_920 holin lysis 1 36446 36652
ATS93709.1 MF979561_p42 hypothetical protein phrog_2193 unknown function unknown function 1 39538 39687
ATS93708.1 MF979561_p41 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 37481 39253
ATS93668.1 MF979561_p1 serine recombinase phrog_2226 SAM-dependent methyltransferase other 1 1724 2155
ATS93692.1 MF979561_p25 hypothetical protein phrog_1391 unknown function unknown function 1 19304 19570
ATS93694.1 MF979561_p27 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 19917 21527
ATS93706.1 MF979561_p39 DNA maturase A phrog_1351 terminase small subunit head and packaging 1 36655 36930
ATS93691.1 MF979561_p24 hypothetical protein phrog_1447 unknown function unknown function 1 19053 19301
ATS93687.1 MF979561_p20 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 17167 17457
ATS93702.1 MF979561_p35 internal virion protein C phrog_1339 internal virion protein head and packaging 1 28020 30293
ATS93683.1 MF979561_p16 hypothetical protein phrog_2254 unknown function unknown function 1 13966 14277
ATS93697.1 MF979561_p30 major capsid protein phrog_12582 head protein head and packaging 1 23675 23821
ATS93679.1 MF979561_p12 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10840 11289
ATS93685.1 MF979561_p18 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 14848 16962
ATS93676.1 MF979561_p9 hypothetical protein phrog_4317 unknown function unknown function 1 9209 9748
ATS93677.1 MF979561_p10 inhibitor of host bacterial RNA polymerase phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9872 10060
ATS93684.1 MF979561_p17 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 14345 14848
ATS93673.1 MF979561_p6 hypothetical protein phrog_2490 unknown function unknown function 1 6924 7085
ATS93689.1 MF979561_p22 hypothetical protein phrog_2251 unknown function unknown function 1 17666 17875
ATS93680.1 MF979561_p13 endolysin phrog_822 amidase lysis 1 11307 11762
ATS93669.1 MF979561_p2 hypothetical protein phrog_2385 unknown function unknown function 1 2146 2361
ATS93704.1 MF979561_p37 tail fiber protein phrog_13980 tail fiber protein tail 1 34365 36431