| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF979564 |
Definition |
Pectobacterium phage DU_PP_V, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Mccorquodalevirinae; Hongcheonvirus; Pectobacterium virus DUPPV. |
DB of origin |
NUCCORE |
Length |
106185 |
Host Name |
Pectobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
127 |
%GC |
39.87 |
Number of singletons |
8 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATS94031.1 | MF979564_p47 | hypothetical protein | phrog_7572 | unknown function | unknown function | -1 | 31671 | 32015 |
| ATS94078.1 | MF979564_p94 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 68073 | 69524 |
| ATS94098.1 | MF979564_p114 | tape measure chaperone | phrog_313 | Tail assembly chaperone | tail | -1 | 94019 | 94426 |
| ATS94109.1 | MF979564_p125 | hypothetical protein | phrog_3802 | terminase small subunit | head and packaging | -1 | 104159 | 104635 |
| ATS94088.1 | MF979564_p104 | flap endonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 79372 | 80238 |
| ATS94007.1 | MF979564_p23 | capsid scaffolding protein | phrog_7810 | unknown function | unknown function | -1 | 19450 | 19965 |
| ATS94016.1 | MF979564_p32 | hypothetical protein | phrog_812 | Rz-like spanin | lysis | -1 | 24408 | 24725 |
| ATS93998.1 | MF979564_p14 | hypothetical protein | phrog_7252 | unknown function | unknown function | 1 | 11402 | 11614 |
| ATS93999.1 | MF979564_p15 | hypothetical protein | phrog_30674 | unknown function | unknown function | -1 | 13945 | 15147 |
| ATS94022.1 | MF979564_p38 | hypothetical protein | phrog_4760 | unknown function | unknown function | -1 | 26943 | 27179 |
| ATS94093.1 | MF979564_p109 | tail protein | phrog_3890 | straight fibre tail protein | tail | -1 | 84054 | 86276 |
| ATS94073.1 | MF979564_p89 | ssDNA-binding transcriptional regulator | phrog_4053 | transcriptional regulator | transcription regulation | 1 | 64420 | 64716 |
| ATS94052.1 | MF979564_p68 | hypothetical protein | phrog_4586 | unknown function | unknown function | -1 | 46185 | 46403 |
| ATS94015.1 | MF979564_p31 | deoxynucleoside-5'-monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 23690 | 24415 |
| ATS93987.1 | MF979564_p3 | A1 protein | phrog_1745 | DNA transfer protein | other | -1 | 1540 | 3207 |
| ATS94077.1 | MF979564_p93 | D5 protein | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 67226 | 67984 |
| ATS93989.1 | MF979564_p5 | A2 protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 3844 | 4266 |
| ATS94100.1 | MF979564_p116 | major tail protein | phrog_3575 | major tail protein | tail | -1 | 95310 | 96695 |
| ATS94020.1 | MF979564_p36 | hypothetical protein | phrog_4821 | unknown function | unknown function | -1 | 26135 | 26473 |
| ATS94054.1 | MF979564_p70 | hypothetical protein | phrog_4593 | unknown function | unknown function | -1 | 47264 | 47539 |
| ATS94105.1 | MF979564_p121 | prohead protease | phrog_80 | head maturation protease | head and packaging | -1 | 99955 | 100554 |
| ATS94029.1 | MF979564_p45 | hypothetical protein | phrog_5444 | unknown function | unknown function | -1 | 29636 | 29893 |
| ATS94050.1 | MF979564_p66 | hypothetical protein | phrog_1491 | tail fiber protein | tail | -1 | 44579 | 45211 |
| ATS94082.1 | MF979564_p98 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 73510 | 74865 |
| ATS94025.1 | MF979564_p41 | hypothetical protein | phrog_7775 | unknown function | unknown function | -1 | 28047 | 28310 |
| ATS93988.1 | MF979564_p4 | hypothetical protein | phrog_4820 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 3297 | 3521 |
| ATS93996.1 | MF979564_p12 | hypothetical protein | phrog_16959 | unknown function | unknown function | -1 | 9282 | 9587 |
| ATS94044.1 | MF979564_p60 | major capsid protein | phrog_1383 | virion structural protein | head and packaging | -1 | 39872 | 40459 |
| ATS94099.1 | MF979564_p115 | minor tail protein | phrog_3889 | base plate tail tube protein | tail | -1 | 94423 | 95307 |
| ATS93990.1 | MF979564_p6 | hypothetical protein | phrog_3747 | unknown function | unknown function | -1 | 5367 | 5642 |
| ATS93985.1 | MF979564_p1 | deoxynucleoside-5'-monophosphatase | phrog_415 | polynucleotide kinase | other | -1 | 111 | 812 |
| ATS94104.1 | MF979564_p120 | major head protein precursor | phrog_10 | major head protein | head and packaging | -1 | 98544 | 99941 |
| ATS94108.1 | MF979564_p124 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 102849 | 104159 |
| ATS94066.1 | MF979564_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58457 | 58708 |
| ATS94014.1 | MF979564_p30 | ATP-dependent Clp protease | phrog_1827 | ATP-dependent protease | other | -1 | 23076 | 23660 |
| ATS94086.1 | MF979564_p102 | recombination endonuclease subunit D13 | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 77041 | 78873 |
| ATS94032.1 | MF979564_p48 | hypothetical protein | phrog_30595 | unknown function | unknown function | -1 | 32704 | 32862 |
| ATS94058.1 | MF979564_p74 | ribonucleotide reductase beta subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 50093 | 51229 |
| ATS94091.1 | MF979564_p107 | tail protein 1 | phrog_1084 | unknown function | unknown function | -1 | 82719 | 83102 |
| ATS94010.1 | MF979564_p26 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 21148 | 21444 |
| ATS94071.1 | MF979564_p87 | D3 protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 63704 | 64108 |
| ATS94074.1 | MF979564_p90 | hypothetical protein | phrog_768 | DprA-like DNA recombination-mediator protein | DNA, RNA and nucleotide metabolism | 1 | 64771 | 65334 |
| ATS94111.1 | MF979564_p127 | iron ABC transporter substrate-binding protein | singleton | unknown function | unknown function | 1 | 105576 | 106040 |
| ATS93986.1 | MF979564_p2 | hypothetical protein | phrog_29591 | unknown function | unknown function | -1 | 1163 | 1525 |
| ATS94079.1 | MF979564_p95 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 69521 | 70396 |
| ATS94085.1 | MF979564_p101 | recombination endonuclease subunit D12 | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 76071 | 77060 |
| ATS94089.1 | MF979564_p105 | deoxyUTP pyrophosphatase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 80240 | 80719 |
| ATS94064.1 | MF979564_p80 | tail assembly protein | phrog_2162 | Sir2 (NAD-dependent deacetylase) | DNA, RNA and nucleotide metabolism | 1 | 57437 | 58237 |
| ATS94096.1 | MF979564_p112 | tail length tape-measure protein | phrog_3779 | tail length tape measure protein | tail | -1 | 89829 | 93512 |
| ATS94097.1 | MF979564_p113 | hypothetical protein | phrog_3914 | tail assembly chaperone | tail | -1 | 93589 | 93957 |
| ATS94062.1 | MF979564_p78 | anaerobic ribonucleoside triphosphate reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 54973 | 56826 |
| ATS94081.1 | MF979564_p97 | hypothetical protein | phrog_4386 | unknown function | unknown function | 1 | 73019 | 73513 |
| ATS94037.1 | MF979564_p53 | hypothetical protein | phrog_1479 | unknown function | unknown function | -1 | 34538 | 34882 |
| ATS94084.1 | MF979564_p100 | D11 protein | phrog_1607 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 75258 | 76019 |
| ATS94063.1 | MF979564_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56926 | 57291 |
| ATS94045.1 | MF979564_p61 | hypothetical protein | phrog_2087 | unknown function | unknown function | -1 | 40431 | 41522 |
| ATS94030.1 | MF979564_p46 | hypothetical protein | phrog_17087 | unknown function | unknown function | -1 | 30017 | 30343 |
| ATS94070.1 | MF979564_p86 | D2 protein | phrog_3611 | helicase | DNA, RNA and nucleotide metabolism | 1 | 62762 | 63460 |
| ATS93991.1 | MF979564_p7 | hypothetical protein | phrog_4718 | unknown function | unknown function | -1 | 5844 | 5999 |
| ATS94067.1 | MF979564_p83 | tail tube protein | phrog_2502 | unknown function | unknown function | 1 | 58701 | 59099 |
| ATS94106.1 | MF979564_p122 | tail protein | phrog_34952 | tail protein | tail | -1 | 100605 | 101312 |
| ATS94043.1 | MF979564_p59 | hypothetical protein | phrog_4551 | unknown function | unknown function | -1 | 39334 | 39636 |
| ATS94051.1 | MF979564_p67 | metallopeptidase | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45470 | 46159 |
| ATS94034.1 | MF979564_p50 | hypothetical protein | phrog_6060 | anti-termination protein Q-like | transcription regulation | -1 | 33202 | 33387 |
| ATS94036.1 | MF979564_p52 | hypothetical protein | phrog_18736 | unknown function | unknown function | -1 | 34189 | 34536 |
| ATS94059.1 | MF979564_p75 | ribonucleoside-diphosphate reductase alpha subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 51311 | 53590 |
| ATS94017.1 | MF979564_p33 | hypothetical protein | phrog_739 | Rz-like spanin | lysis | -1 | 24692 | 25084 |
| ATS94039.1 | MF979564_p55 | hypothetical protein | phrog_3260 | unknown function | unknown function | -1 | 36076 | 36279 |
| ATS94001.1 | MF979564_p17 | hypothetical protein | phrog_4605 | unknown function | unknown function | -1 | 16035 | 16460 |
| ATS94069.1 | MF979564_p85 | hypothetical protein | phrog_5291 | unknown function | unknown function | 1 | 62476 | 62700 |
| ATS94087.1 | MF979564_p103 | D14 protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 78870 | 79352 |
| ATS94026.1 | MF979564_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28494 | 28670 |
| ATS94004.1 | MF979564_p20 | hypothetical protein | phrog_4804 | unknown function | unknown function | -1 | 17373 | 17618 |
| ATS94101.1 | MF979564_p117 | hypothetical protein | phrog_3907 | tail terminator | connector | -1 | 96712 | 97212 |
| ATS94008.1 | MF979564_p24 | hypothetical protein | phrog_6073 | Rz-like spanin | lysis | -1 | 19962 | 20192 |
| ATS94068.1 | MF979564_p84 | replication origin binding protein | phrog_3712 | replication origin binding | DNA, RNA and nucleotide metabolism | 1 | 59700 | 62516 |
| ATS94090.1 | MF979564_p106 | tail fiber protein | phrog_20001 | tail fiber protein | tail | -1 | 80885 | 82729 |
| ATS94048.1 | MF979564_p64 | hypothetical protein | phrog_1460 | tRNA amidotransferase | DNA, RNA and nucleotide metabolism | -1 | 43273 | 43722 |
| ATS94018.1 | MF979564_p34 | DNA polymerase III subunit epsilon | phrog_4243 | unknown function | unknown function | -1 | 25084 | 25704 |
| ATS94003.1 | MF979564_p19 | hypothetical protein | phrog_4215 | unknown function | unknown function | -1 | 16793 | 17293 |
| ATS94040.1 | MF979564_p56 | hypothetical protein | phrog_944 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 37725 | 38201 |
| ATS94042.1 | MF979564_p58 | hypothetical protein | phrog_27815 | unknown function | unknown function | -1 | 38689 | 38994 |
| ATS94061.1 | MF979564_p77 | PhoH-like protein | phrog_170 | PhoH-like phosphate starvation-inducible | other | -1 | 53863 | 54621 |
| ATS94012.1 | MF979564_p28 | endolysin | phrog_465 | endolysin | lysis | -1 | 21872 | 22285 |
| ATS94110.1 | MF979564_p126 | hypothetical protein | phrog_2008 | unknown function | unknown function | 1 | 104755 | 105048 |
| ATS94049.1 | MF979564_p65 | cell wall hydrolase | phrog_938 | endolysin | lysis | -1 | 43731 | 44183 |
| ATS94024.1 | MF979564_p40 | N-acetylmuramoyl-L-alanine amidase | phrog_5598 | unknown function | unknown function | -1 | 27755 | 27943 |
| ATS94083.1 | MF979564_p99 | hypothetical protein | phrog_4258 | unknown function | unknown function | 1 | 74903 | 75265 |
| ATS93992.1 | MF979564_p8 | hypothetical protein | phrog_7884 | unknown function | unknown function | -1 | 6481 | 6678 |
| ATS94075.1 | MF979564_p91 | NAD-dependent DNA ligase subunit A | phrog_3359 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 65322 | 66299 |
| ATS94072.1 | MF979564_p88 | hypothetical protein | phrog_3696 | unknown function | unknown function | 1 | 64118 | 64420 |
| ATS94038.1 | MF979564_p54 | hypothetical protein | phrog_8729 | unknown function | unknown function | -1 | 34986 | 35255 |
| ATS93995.1 | MF979564_p11 | hypothetical protein | phrog_6741 | unknown function | unknown function | -1 | 8714 | 9271 |
| ATS94023.1 | MF979564_p39 | hypothetical protein | phrog_14510 | unknown function | unknown function | -1 | 27307 | 27750 |
| ATS94041.1 | MF979564_p57 | hypothetical protein | phrog_21567 | unknown function | unknown function | -1 | 38203 | 38397 |
| ATS94056.1 | MF979564_p72 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 48670 | 49503 |
| ATS94080.1 | MF979564_p96 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 70461 | 73022 |
| ATS94055.1 | MF979564_p71 | ribonuclease H | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 47958 | 48437 |
| ATS94107.1 | MF979564_p123 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 101309 | 102520 |
| ATS94047.1 | MF979564_p63 | hypothetical protein | phrog_464 | unknown function | unknown function | -1 | 43004 | 43276 |
| ATS94046.1 | MF979564_p62 | hypothetical protein | phrog_18988 | unknown function | unknown function | -1 | 41522 | 41875 |
| ATS94092.1 | MF979564_p108 | hypothetical protein | phrog_425 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | -1 | 83105 | 83773 |
| ATS94021.1 | MF979564_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26466 | 26756 |
| ATS94009.1 | MF979564_p25 | serine/threonine protein phosphatase 2 | phrog_246 | NinI-like serine-threonine phosphatase | other | -1 | 20195 | 21043 |
| ATS93993.1 | MF979564_p9 | hypothetical protein | phrog_6973 | unknown function | unknown function | -1 | 8006 | 8191 |
| ATS94002.1 | MF979564_p18 | hypothetical protein | phrog_4905 | unknown function | unknown function | -1 | 16507 | 16806 |
| ATS94019.1 | MF979564_p35 | tail tape measure protein | phrog_5486 | unknown function | unknown function | -1 | 25762 | 26145 |
| ATS94011.1 | MF979564_p27 | hypothetical protein | phrog_4328 | unknown function | unknown function | -1 | 21434 | 21796 |
| ATS94053.1 | MF979564_p69 | hypothetical protein | phrog_4516 | unknown function | unknown function | -1 | 46697 | 47182 |
| ATS94094.1 | MF979564_p110 | tail protein | phrog_31 | central tail fiber J | tail | -1 | 86273 | 89107 |
| ATS94095.1 | MF979564_p111 | hypothetical protein | phrog_1302 | distal tail protein | tail | -1 | 89104 | 89721 |
| ATS94057.1 | MF979564_p73 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 49503 | 50093 |
| ATS94028.1 | MF979564_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29356 | 29634 |
| ATS94000.1 | MF979564_p16 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15380 | 15760 |
| ATS94060.1 | MF979564_p76 | hypothetical protein | phrog_28253 | unknown function | unknown function | -1 | 53642 | 53863 |
| ATS93997.1 | MF979564_p13 | hypothetical protein | phrog_4263 | unknown function | unknown function | -1 | 9685 | 10746 |
| ATS94076.1 | MF979564_p92 | NAD-dependent DNA ligase subunit B | phrog_3498 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 66489 | 67238 |
| ATS94065.1 | MF979564_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58227 | 58394 |
| ATS94005.1 | MF979564_p21 | protein 2C | phrog_3880 | unknown function | unknown function | -1 | 17990 | 18241 |
| ATS94035.1 | MF979564_p51 | hypothetical protein | phrog_26404 | unknown function | unknown function | -1 | 33678 | 33839 |
| ATS94102.1 | MF979564_p118 | hypothetical protein | phrog_3725 | tail completion or Neck1 protein | connector | -1 | 97214 | 97975 |
| ATS94013.1 | MF979564_p29 | holin | phrog_860 | holin | lysis | -1 | 22282 | 22938 |
| ATS94103.1 | MF979564_p119 | hypothetical protein | phrog_442 | head-tail adaptor | connector | -1 | 97975 | 98487 |
| ATS94027.1 | MF979564_p43 | hypothetical protein | phrog_14410 | unknown function | unknown function | -1 | 29156 | 29359 |
| ATS94033.1 | MF979564_p49 | hypothetical protein | phrog_9447 | unknown function | unknown function | -1 | 32864 | 33202 |
| ATS93994.1 | MF979564_p10 | hypothetical protein | phrog_4379 | unknown function | unknown function | -1 | 8325 | 8708 |
| ATS94006.1 | MF979564_p22 | serine/threonine protein phosphatase 1 | phrog_547 | phosphoesterase | other | -1 | 18836 | 19453 |