Genomic map of Pectobacterium phage DU_PP_V (MF979564)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF979564
Definition
Pectobacterium phage DU_PP_V, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Mccorquodalevirinae; Hongcheonvirus; Pectobacterium virus DUPPV.
DB of origin
NUCCORE
Length
106185
Host Name
Pectobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
127
%GC
39.87
Number of singletons
8
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATS94031.1 MF979564_p47 hypothetical protein phrog_7572 unknown function unknown function -1 31671 32015
ATS94078.1 MF979564_p94 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 68073 69524
ATS94098.1 MF979564_p114 tape measure chaperone phrog_313 Tail assembly chaperone tail -1 94019 94426
ATS94109.1 MF979564_p125 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 104159 104635
ATS94088.1 MF979564_p104 flap endonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 79372 80238
ATS94007.1 MF979564_p23 capsid scaffolding protein phrog_7810 unknown function unknown function -1 19450 19965
ATS94016.1 MF979564_p32 hypothetical protein phrog_812 Rz-like spanin lysis -1 24408 24725
ATS93998.1 MF979564_p14 hypothetical protein phrog_7252 unknown function unknown function 1 11402 11614
ATS93999.1 MF979564_p15 hypothetical protein phrog_30674 unknown function unknown function -1 13945 15147
ATS94022.1 MF979564_p38 hypothetical protein phrog_4760 unknown function unknown function -1 26943 27179
ATS94093.1 MF979564_p109 tail protein phrog_3890 straight fibre tail protein tail -1 84054 86276
ATS94073.1 MF979564_p89 ssDNA-binding transcriptional regulator phrog_4053 transcriptional regulator transcription regulation 1 64420 64716
ATS94052.1 MF979564_p68 hypothetical protein phrog_4586 unknown function unknown function -1 46185 46403
ATS94015.1 MF979564_p31 deoxynucleoside-5'-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 23690 24415
ATS93987.1 MF979564_p3 A1 protein phrog_1745 DNA transfer protein other -1 1540 3207
ATS94077.1 MF979564_p93 D5 protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 67226 67984
ATS93989.1 MF979564_p5 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 3844 4266
ATS94100.1 MF979564_p116 major tail protein phrog_3575 major tail protein tail -1 95310 96695
ATS94020.1 MF979564_p36 hypothetical protein phrog_4821 unknown function unknown function -1 26135 26473
ATS94054.1 MF979564_p70 hypothetical protein phrog_4593 unknown function unknown function -1 47264 47539
ATS94105.1 MF979564_p121 prohead protease phrog_80 head maturation protease head and packaging -1 99955 100554
ATS94029.1 MF979564_p45 hypothetical protein phrog_5444 unknown function unknown function -1 29636 29893
ATS94050.1 MF979564_p66 hypothetical protein phrog_1491 tail fiber protein tail -1 44579 45211
ATS94082.1 MF979564_p98 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 73510 74865
ATS94025.1 MF979564_p41 hypothetical protein phrog_7775 unknown function unknown function -1 28047 28310
ATS93988.1 MF979564_p4 hypothetical protein phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 3297 3521
ATS93996.1 MF979564_p12 hypothetical protein phrog_16959 unknown function unknown function -1 9282 9587
ATS94044.1 MF979564_p60 major capsid protein phrog_1383 virion structural protein head and packaging -1 39872 40459
ATS94099.1 MF979564_p115 minor tail protein phrog_3889 base plate tail tube protein tail -1 94423 95307
ATS93990.1 MF979564_p6 hypothetical protein phrog_3747 unknown function unknown function -1 5367 5642
ATS93985.1 MF979564_p1 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 111 812
ATS94104.1 MF979564_p120 major head protein precursor phrog_10 major head protein head and packaging -1 98544 99941
ATS94108.1 MF979564_p124 terminase large subunit phrog_2 terminase large subunit head and packaging -1 102849 104159
ATS94066.1 MF979564_p82 hypothetical protein singleton unknown function unknown function 1 58457 58708
ATS94014.1 MF979564_p30 ATP-dependent Clp protease phrog_1827 ATP-dependent protease other -1 23076 23660
ATS94086.1 MF979564_p102 recombination endonuclease subunit D13 phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 77041 78873
ATS94032.1 MF979564_p48 hypothetical protein phrog_30595 unknown function unknown function -1 32704 32862
ATS94058.1 MF979564_p74 ribonucleotide reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 50093 51229
ATS94091.1 MF979564_p107 tail protein 1 phrog_1084 unknown function unknown function -1 82719 83102
ATS94010.1 MF979564_p26 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 21148 21444
ATS94071.1 MF979564_p87 D3 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 63704 64108
ATS94074.1 MF979564_p90 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 64771 65334
ATS94111.1 MF979564_p127 iron ABC transporter substrate-binding protein singleton unknown function unknown function 1 105576 106040
ATS93986.1 MF979564_p2 hypothetical protein phrog_29591 unknown function unknown function -1 1163 1525
ATS94079.1 MF979564_p95 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 69521 70396
ATS94085.1 MF979564_p101 recombination endonuclease subunit D12 phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 76071 77060
ATS94089.1 MF979564_p105 deoxyUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 80240 80719
ATS94064.1 MF979564_p80 tail assembly protein phrog_2162 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism 1 57437 58237
ATS94096.1 MF979564_p112 tail length tape-measure protein phrog_3779 tail length tape measure protein tail -1 89829 93512
ATS94097.1 MF979564_p113 hypothetical protein phrog_3914 tail assembly chaperone tail -1 93589 93957
ATS94062.1 MF979564_p78 anaerobic ribonucleoside triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 54973 56826
ATS94081.1 MF979564_p97 hypothetical protein phrog_4386 unknown function unknown function 1 73019 73513
ATS94037.1 MF979564_p53 hypothetical protein phrog_1479 unknown function unknown function -1 34538 34882
ATS94084.1 MF979564_p100 D11 protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 75258 76019
ATS94063.1 MF979564_p79 hypothetical protein singleton unknown function unknown function 1 56926 57291
ATS94045.1 MF979564_p61 hypothetical protein phrog_2087 unknown function unknown function -1 40431 41522
ATS94030.1 MF979564_p46 hypothetical protein phrog_17087 unknown function unknown function -1 30017 30343
ATS94070.1 MF979564_p86 D2 protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 62762 63460
ATS93991.1 MF979564_p7 hypothetical protein phrog_4718 unknown function unknown function -1 5844 5999
ATS94067.1 MF979564_p83 tail tube protein phrog_2502 unknown function unknown function 1 58701 59099
ATS94106.1 MF979564_p122 tail protein phrog_34952 tail protein tail -1 100605 101312
ATS94043.1 MF979564_p59 hypothetical protein phrog_4551 unknown function unknown function -1 39334 39636
ATS94051.1 MF979564_p67 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 45470 46159
ATS94034.1 MF979564_p50 hypothetical protein phrog_6060 anti-termination protein Q-like transcription regulation -1 33202 33387
ATS94036.1 MF979564_p52 hypothetical protein phrog_18736 unknown function unknown function -1 34189 34536
ATS94059.1 MF979564_p75 ribonucleoside-diphosphate reductase alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 51311 53590
ATS94017.1 MF979564_p33 hypothetical protein phrog_739 Rz-like spanin lysis -1 24692 25084
ATS94039.1 MF979564_p55 hypothetical protein phrog_3260 unknown function unknown function -1 36076 36279
ATS94001.1 MF979564_p17 hypothetical protein phrog_4605 unknown function unknown function -1 16035 16460
ATS94069.1 MF979564_p85 hypothetical protein phrog_5291 unknown function unknown function 1 62476 62700
ATS94087.1 MF979564_p103 D14 protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 78870 79352
ATS94026.1 MF979564_p42 hypothetical protein singleton unknown function unknown function -1 28494 28670
ATS94004.1 MF979564_p20 hypothetical protein phrog_4804 unknown function unknown function -1 17373 17618
ATS94101.1 MF979564_p117 hypothetical protein phrog_3907 tail terminator connector -1 96712 97212
ATS94008.1 MF979564_p24 hypothetical protein phrog_6073 Rz-like spanin lysis -1 19962 20192
ATS94068.1 MF979564_p84 replication origin binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 59700 62516
ATS94090.1 MF979564_p106 tail fiber protein phrog_20001 tail fiber protein tail -1 80885 82729
ATS94048.1 MF979564_p64 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 43273 43722
ATS94018.1 MF979564_p34 DNA polymerase III subunit epsilon phrog_4243 unknown function unknown function -1 25084 25704
ATS94003.1 MF979564_p19 hypothetical protein phrog_4215 unknown function unknown function -1 16793 17293
ATS94040.1 MF979564_p56 hypothetical protein phrog_944 membrane protein moron, auxiliary metabolic gene and host takeover -1 37725 38201
ATS94042.1 MF979564_p58 hypothetical protein phrog_27815 unknown function unknown function -1 38689 38994
ATS94061.1 MF979564_p77 PhoH-like protein phrog_170 PhoH-like phosphate starvation-inducible other -1 53863 54621
ATS94012.1 MF979564_p28 endolysin phrog_465 endolysin lysis -1 21872 22285
ATS94110.1 MF979564_p126 hypothetical protein phrog_2008 unknown function unknown function 1 104755 105048
ATS94049.1 MF979564_p65 cell wall hydrolase phrog_938 endolysin lysis -1 43731 44183
ATS94024.1 MF979564_p40 N-acetylmuramoyl-L-alanine amidase phrog_5598 unknown function unknown function -1 27755 27943
ATS94083.1 MF979564_p99 hypothetical protein phrog_4258 unknown function unknown function 1 74903 75265
ATS93992.1 MF979564_p8 hypothetical protein phrog_7884 unknown function unknown function -1 6481 6678
ATS94075.1 MF979564_p91 NAD-dependent DNA ligase subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 65322 66299
ATS94072.1 MF979564_p88 hypothetical protein phrog_3696 unknown function unknown function 1 64118 64420
ATS94038.1 MF979564_p54 hypothetical protein phrog_8729 unknown function unknown function -1 34986 35255
ATS93995.1 MF979564_p11 hypothetical protein phrog_6741 unknown function unknown function -1 8714 9271
ATS94023.1 MF979564_p39 hypothetical protein phrog_14510 unknown function unknown function -1 27307 27750
ATS94041.1 MF979564_p57 hypothetical protein phrog_21567 unknown function unknown function -1 38203 38397
ATS94056.1 MF979564_p72 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 48670 49503
ATS94080.1 MF979564_p96 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 70461 73022
ATS94055.1 MF979564_p71 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 47958 48437
ATS94107.1 MF979564_p123 portal protein phrog_12 portal protein head and packaging -1 101309 102520
ATS94047.1 MF979564_p63 hypothetical protein phrog_464 unknown function unknown function -1 43004 43276
ATS94046.1 MF979564_p62 hypothetical protein phrog_18988 unknown function unknown function -1 41522 41875
ATS94092.1 MF979564_p108 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover -1 83105 83773
ATS94021.1 MF979564_p37 hypothetical protein singleton unknown function unknown function -1 26466 26756
ATS94009.1 MF979564_p25 serine/threonine protein phosphatase 2 phrog_246 NinI-like serine-threonine phosphatase other -1 20195 21043
ATS93993.1 MF979564_p9 hypothetical protein phrog_6973 unknown function unknown function -1 8006 8191
ATS94002.1 MF979564_p18 hypothetical protein phrog_4905 unknown function unknown function -1 16507 16806
ATS94019.1 MF979564_p35 tail tape measure protein phrog_5486 unknown function unknown function -1 25762 26145
ATS94011.1 MF979564_p27 hypothetical protein phrog_4328 unknown function unknown function -1 21434 21796
ATS94053.1 MF979564_p69 hypothetical protein phrog_4516 unknown function unknown function -1 46697 47182
ATS94094.1 MF979564_p110 tail protein phrog_31 central tail fiber J tail -1 86273 89107
ATS94095.1 MF979564_p111 hypothetical protein phrog_1302 distal tail protein tail -1 89104 89721
ATS94057.1 MF979564_p73 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 49503 50093
ATS94028.1 MF979564_p44 hypothetical protein singleton unknown function unknown function -1 29356 29634
ATS94000.1 MF979564_p16 hypothetical protein singleton unknown function unknown function -1 15380 15760
ATS94060.1 MF979564_p76 hypothetical protein phrog_28253 unknown function unknown function -1 53642 53863
ATS93997.1 MF979564_p13 hypothetical protein phrog_4263 unknown function unknown function -1 9685 10746
ATS94076.1 MF979564_p92 NAD-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 66489 67238
ATS94065.1 MF979564_p81 hypothetical protein singleton unknown function unknown function 1 58227 58394
ATS94005.1 MF979564_p21 protein 2C phrog_3880 unknown function unknown function -1 17990 18241
ATS94035.1 MF979564_p51 hypothetical protein phrog_26404 unknown function unknown function -1 33678 33839
ATS94102.1 MF979564_p118 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 97214 97975
ATS94013.1 MF979564_p29 holin phrog_860 holin lysis -1 22282 22938
ATS94103.1 MF979564_p119 hypothetical protein phrog_442 head-tail adaptor connector -1 97975 98487
ATS94027.1 MF979564_p43 hypothetical protein phrog_14410 unknown function unknown function -1 29156 29359
ATS94033.1 MF979564_p49 hypothetical protein phrog_9447 unknown function unknown function -1 32864 33202
ATS93994.1 MF979564_p10 hypothetical protein phrog_4379 unknown function unknown function -1 8325 8708
ATS94006.1 MF979564_p22 serine/threonine protein phosphatase 1 phrog_547 phosphoesterase other -1 18836 19453