Genomic map of Pseudoalteromonas phage J2-1 (MF988720)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF988720
Definition
Pseudoalteromonas phage J2-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Qingdaovirus; Pseudoalteromonas virus J2-1.
DB of origin
NUCCORE
Length
142204
Host Name
Pseudoalteromonas phenolica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
180
%GC
37.92
Number of singletons
87
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATN93433.1 MF988720_p61 hypothetical protein singleton unknown function unknown function 1 62023 63051
ATN93444.1 MF988720_p72 hypothetical protein singleton unknown function unknown function 1 67698 68423
ATN93498.1 MF988720_p126 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism -1 101151 101777
ATN93521.1 MF988720_p149 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 116433 117953
ATN93527.1 MF988720_p155 hypothetical protein singleton unknown function unknown function -1 121454 121954
ATN93495.1 MF988720_p123 tRNA nucleotidyltransferase phrog_2244 tRNA nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 98461 99690
ATN93501.1 MF988720_p129 hypothetical protein phrog_1040 peptidase HslV family other -1 103088 104254
ATN93411.1 MF988720_p39 antifreeze protein singleton unknown function unknown function 1 40796 42628
ATN93472.1 MF988720_p100 hypothetical protein singleton unknown function unknown function 1 87539 88003
ATN93437.1 MF988720_p65 hypothetical protein singleton unknown function unknown function 1 63871 64500
ATN93413.1 MF988720_p41 hypothetical protein singleton unknown function unknown function 1 43287 43451
ATN93494.1 MF988720_p122 hypothetical protein singleton unknown function unknown function 1 97970 98464
ATN93446.1 MF988720_p74 hypothetical protein phrog_600 unknown function unknown function 1 69173 69754
ATN93538.1 MF988720_p166 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 129368 130486
ATN93477.1 MF988720_p105 hypothetical protein phrog_34422 unknown function unknown function 1 89813 90214
ATN93410.1 MF988720_p38 hypothetical protein phrog_37302 unknown function unknown function 1 40490 40786
ATN93456.1 MF988720_p84 hypothetical protein singleton unknown function unknown function 1 75288 75806
ATN93443.1 MF988720_p71 hypothetical protein singleton unknown function unknown function 1 67285 67629
ATN93442.1 MF988720_p70 hypothetical protein singleton unknown function unknown function 1 67118 67276
ATN93516.1 MF988720_p144 HNH endonuclease phrog_1985 HNH endonuclease DNA, RNA and nucleotide metabolism -1 113637 114215
ATN93547.1 MF988720_p175 PF11443 domain protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism -1 136496 138055
ATN93375.1 MF988720_p3 hypothetical protein singleton unknown function unknown function -1 2308 2682
ATN93478.1 MF988720_p106 hypothetical protein phrog_34422 unknown function unknown function 1 90217 90612
ATN93461.1 MF988720_p89 hypothetical protein singleton unknown function unknown function 1 79298 79744
ATN93454.1 MF988720_p82 hypothetical protein singleton unknown function unknown function 1 74088 74516
ATN93507.1 MF988720_p135 ribonucleotide-diphosphate reductase subunit alpha phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 107932 110451
ATN93418.1 MF988720_p46 hypothetical protein phrog_562 RNA ligase and tail fiber protein attachment catalyst tail 1 46922 48181
ATN93427.1 MF988720_p55 hypothetical protein singleton unknown function unknown function 1 55680 55847
ATN93451.1 MF988720_p79 hypothetical protein singleton unknown function unknown function 1 71894 72292
ATN93428.1 MF988720_p56 hypothetical protein phrog_25204 unknown function unknown function 1 55849 56346
ATN93468.1 MF988720_p96 hypothetical protein singleton unknown function unknown function 1 83161 83487
ATN93545.1 MF988720_p173 endonuclease phrog_5018 unknown function unknown function -1 134472 134885
ATN93404.1 MF988720_p32 hypothetical protein phrog_120 baseplate wedge subunit tail 1 28185 28538
ATN93492.1 MF988720_p120 hypothetical protein singleton unknown function unknown function 1 97375 97596
ATN93395.1 MF988720_p23 structural protein phrog_205 tail sheath tail 1 20280 21653
ATN93460.1 MF988720_p88 hypothetical protein singleton unknown function unknown function 1 78283 78879
ATN93421.1 MF988720_p49 phosphatase phrog_335 phosphatase other 1 50131 50652
ATN93466.1 MF988720_p94 hypothetical protein singleton unknown function unknown function 1 81849 81983
ATN93487.1 MF988720_p115 hypothetical protein phrog_1017 unknown function unknown function 1 94599 95120
ATN93484.1 MF988720_p112 hypothetical protein singleton unknown function unknown function 1 93542 94009
ATN93551.1 MF988720_p179 hypothetical protein singleton unknown function unknown function -1 140600 141439
ATN93441.1 MF988720_p69 hypothetical protein singleton unknown function unknown function 1 66678 67040
ATN93525.1 MF988720_p153 sodium:calcium symporter singleton unknown function unknown function -1 120036 121169
ATN93552.1 MF988720_p180 hypothetical protein phrog_9325 unknown function unknown function -1 141550 142179
ATN93504.1 MF988720_p132 hypothetical protein phrog_19206 unknown function unknown function -1 105697 106329
ATN93473.1 MF988720_p101 hypothetical protein singleton unknown function unknown function 1 88015 88536
ATN93402.1 MF988720_p30 hypothetical protein phrog_11 baseplate spike tail 1 27311 28009
ATN93529.1 MF988720_p157 stress response protein phrog_5359 unknown function unknown function -1 122662 123381
ATN93475.1 MF988720_p103 hypothetical protein singleton unknown function unknown function 1 89030 89305
ATN93387.1 MF988720_p15 hypothetical protein singleton unknown function unknown function 1 15442 15810
ATN93541.1 MF988720_p169 hypothetical protein singleton unknown function unknown function -1 131140 131646
ATN93524.1 MF988720_p152 hypothetical protein singleton unknown function unknown function -1 119408 119992
ATN93523.1 MF988720_p151 hypothetical protein singleton unknown function unknown function -1 118451 119359
ATN93424.1 MF988720_p52 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 52363 53241
ATN93382.1 MF988720_p10 portal protein phrog_113 portal protein head and packaging 1 10281 11831
ATN93429.1 MF988720_p57 DNA primase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 56409 58451
ATN93542.1 MF988720_p170 hypothetical protein singleton unknown function unknown function -1 131748 132116
ATN93537.1 MF988720_p165 hypothetical protein phrog_4521 unknown function unknown function -1 128607 129290
ATN93517.1 MF988720_p145 hypothetical protein singleton unknown function unknown function -1 114215 114478
ATN93374.1 MF988720_p2 F-box DNA helicase protein 1-like protein phrog_1967 DNA helicase DNA, RNA and nucleotide metabolism -1 616 2244
ATN93535.1 MF988720_p163 metallo-dependent phosphatase phrog_284 exonuclease DNA, RNA and nucleotide metabolism -1 126646 127878
ATN93470.1 MF988720_p98 protein of unknown function DUF488 phrog_2450 unknown function unknown function 1 86894 87253
ATN93502.1 MF988720_p130 PhoH family protein phrog_170 PhoH-like phosphate starvation-inducible other -1 104282 105070
ATN93503.1 MF988720_p131 secretion activating protein phrog_315 endolysin lysis -1 105080 105655
ATN93431.1 MF988720_p59 HNH endonuclease family protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61042 61542
ATN93383.1 MF988720_p11 hypothetical protein phrog_1530 DNA methyltransferase other 1 12033 12929
ATN93544.1 MF988720_p172 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 133405 133944
ATN93426.1 MF988720_p54 aspartyl-tRNA amidotransferase subunit B phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism 1 55153 55677
ATN93452.1 MF988720_p80 hypothetical protein phrog_25822 unknown function unknown function 1 72734 73504
ATN93376.1 MF988720_p4 hypothetical protein singleton unknown function unknown function 1 3440 3802
ATN93540.1 MF988720_p168 hypothetical protein phrog_6546 unknown function unknown function -1 130687 131118
ATN93439.1 MF988720_p67 hypothetical protein singleton unknown function unknown function 1 65677 65949
ATN93522.1 MF988720_p150 hypothetical protein singleton unknown function unknown function -1 117962 118441
ATN93384.1 MF988720_p12 hypothetical protein phrog_2970 unknown function unknown function 1 12938 13933
ATN93513.1 MF988720_p141 hypothetical protein singleton unknown function unknown function -1 112736 112975
ATN93440.1 MF988720_p68 hypothetical protein singleton unknown function unknown function 1 65962 66675
ATN93476.1 MF988720_p104 hypothetical protein singleton unknown function unknown function 1 89295 89741
ATN93485.1 MF988720_p113 hypothetical protein singleton unknown function unknown function 1 94018 94221
ATN93373.1 MF988720_p1 hypothetical protein singleton unknown function unknown function -1 174 428
ATN93546.1 MF988720_p174 hypothetical protein singleton unknown function unknown function -1 135992 136492
ATN93407.1 MF988720_p35 minor structural protein phrog_5717 tail protein tail 1 30786 31529
ATN93520.1 MF988720_p148 hypothetical protein singleton unknown function unknown function -1 116267 116440
ATN93420.1 MF988720_p48 postulated decoy protein phrog_3118 HNH endonuclease DNA, RNA and nucleotide metabolism 1 49295 50134
ATN93381.1 MF988720_p9 large terminase subunit phrog_979 terminase large subunit head and packaging 1 9030 10211
ATN93459.1 MF988720_p87 hypothetical protein phrog_26364 unknown function unknown function 1 76931 77686
ATN93417.1 MF988720_p45 hypothetical protein phrog_548 RNA ligase DNA, RNA and nucleotide metabolism 1 45754 46896
ATN93499.1 MF988720_p127 hypothetical protein singleton unknown function unknown function -1 101894 102127
ATN93458.1 MF988720_p86 hypothetical protein singleton unknown function unknown function 1 76277 76843
ATN93531.1 MF988720_p159 hypothetical protein phrog_5698 unknown function unknown function -1 124045 124692
ATN93425.1 MF988720_p53 nicotinamide phosphoribosyl transferase phrog_448 nicotinamide phosphoribosyl transferase other 1 53337 55079
ATN93401.1 MF988720_p29 hypothetical protein phrog_196 baseplate hub tail 1 26139 27311
ATN93399.1 MF988720_p27 hypothetical protein phrog_1517 endolysin lysis 1 25169 25780
ATN93514.1 MF988720_p142 hypothetical protein phrog_20244 unknown function unknown function -1 112975 113388
ATN93483.1 MF988720_p111 hypothetical protein singleton unknown function unknown function 1 93225 93533
ATN93380.1 MF988720_p8 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 8199 8882
ATN93419.1 MF988720_p47 polynucleotide 5'-kinase and 3'-phosphatase phrog_505 polynucleotide kinase other 1 48202 49182
ATN93389.1 MF988720_p17 hypothetical protein singleton unknown function unknown function 1 16812 17870
ATN93398.1 MF988720_p26 tail tape measure protein phrog_7817 unknown function unknown function 1 23020 25176
ATN93455.1 MF988720_p83 hypothetical protein singleton unknown function unknown function 1 75050 75202
ATN93543.1 MF988720_p171 hypothetical protein singleton unknown function unknown function -1 132226 132363
ATN93462.1 MF988720_p90 hypothetical protein singleton unknown function unknown function 1 79821 79937
ATN93385.1 MF988720_p13 head stabilization/decoration protein phrog_2680 head decoration head and packaging 1 13961 14314
ATN93388.1 MF988720_p16 hypothetical protein phrog_19877 unknown function unknown function 1 16135 16812
ATN93377.1 MF988720_p5 hypothetical protein phrog_2524 unknown function unknown function 1 3912 4352
ATN93386.1 MF988720_p14 major capsid protein phrog_29 major head protein head and packaging 1 14345 15370
ATN93449.1 MF988720_p77 hypothetical protein singleton unknown function unknown function -1 70984 71250
ATN93515.1 MF988720_p143 hypothetical protein singleton unknown function unknown function -1 113473 113640
ATN93392.1 MF988720_p20 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 18816 19304
ATN93405.1 MF988720_p33 baseplate component phrog_6 baseplate wedge subunit tail 1 28540 29991
ATN93509.1 MF988720_p137 hypothetical protein singleton unknown function unknown function -1 110686 110916
ATN93423.1 MF988720_p51 hypothetical protein singleton unknown function unknown function 1 51953 52345
ATN93445.1 MF988720_p73 hypothetical protein singleton unknown function unknown function 1 68521 69171
ATN93491.1 MF988720_p119 hypothetical protein phrog_2859 unknown function unknown function 1 97010 97375
ATN93465.1 MF988720_p93 hypothetical protein singleton unknown function unknown function 1 81380 81529
ATN93534.1 MF988720_p162 hypothetical protein singleton unknown function unknown function -1 126179 126610
ATN93539.1 MF988720_p167 hypothetical protein phrog_24860 unknown function unknown function -1 130487 130678
ATN93533.1 MF988720_p161 recombination-associated protein phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism -1 125226 126176
ATN93481.1 MF988720_p109 hypothetical protein singleton unknown function unknown function 1 92445 92786
ATN93393.1 MF988720_p21 hypothetical protein phrog_939 head protein head and packaging 1 19314 19673
ATN93438.1 MF988720_p66 hypothetical protein phrog_990 metal-dependent phosphohydrolase other 1 64504 65619
ATN93435.1 MF988720_p63 hypothetical protein phrog_4786 cysteine dioxygenase other 1 63190 63636
ATN93496.1 MF988720_p124 thioredoxin phrog_388 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 99692 100720
ATN93550.1 MF988720_p178 hypothetical protein singleton unknown function unknown function -1 139606 140598
ATN93532.1 MF988720_p160 hypothetical protein singleton unknown function unknown function -1 124718 125149
ATN93432.1 MF988720_p60 hypothetical protein singleton unknown function unknown function 1 61769 61930
ATN93412.1 MF988720_p40 hypothetical protein phrog_17206 unknown function unknown function 1 42797 43219
ATN93479.1 MF988720_p107 ATPase phrog_2376 ATPase other 1 90676 91845
ATN93436.1 MF988720_p64 hypothetical protein phrog_7020 unknown function unknown function 1 63620 63859
ATN93489.1 MF988720_p117 hypothetical protein singleton unknown function unknown function 1 96006 96269
ATN93508.1 MF988720_p136 hypothetical protein singleton unknown function unknown function -1 110460 110693
ATN93422.1 MF988720_p50 hypothetical protein singleton unknown function unknown function 1 50649 51950
ATN93506.1 MF988720_p134 ribonucleotide-diphosphate reductase subunit beta phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 106730 107863
ATN93530.1 MF988720_p158 chemical-damaging agent resistance protein C phrog_5698 unknown function unknown function -1 123406 123972
ATN93467.1 MF988720_p95 hypothetical protein singleton unknown function unknown function 1 82771 83058
ATN93528.1 MF988720_p156 hypothetical protein singleton unknown function unknown function -1 122012 122542
ATN93447.1 MF988720_p75 NUDIX hydrolase singleton unknown function unknown function 1 69764 70282
ATN93480.1 MF988720_p108 hypothetical protein singleton unknown function unknown function 1 91925 92377
ATN93464.1 MF988720_p92 hypothetical protein singleton unknown function unknown function 1 80635 81366
ATN93457.1 MF988720_p85 hypothetical protein singleton unknown function unknown function 1 75850 76170
ATN93397.1 MF988720_p25 tail assembly chaperone phrog_1613 tail assembly chaperone tail 1 22317 22772
ATN93474.1 MF988720_p102 hypothetical protein singleton unknown function unknown function 1 88606 88911
ATN93378.1 MF988720_p6 Kelch motif family protein singleton unknown function unknown function 1 4362 7658
ATN93434.1 MF988720_p62 alternative ribosome-rescue factor A singleton unknown function unknown function 1 63035 63190
ATN93409.1 MF988720_p37 hypothetical protein phrog_14489 unknown function unknown function 1 35780 40471
ATN93448.1 MF988720_p76 hypothetical protein singleton unknown function unknown function 1 70275 70571
ATN93486.1 MF988720_p114 hypothetical protein singleton unknown function unknown function 1 94223 94606
ATN93505.1 MF988720_p133 hypothetical protein singleton unknown function unknown function -1 106319 106717
ATN93519.1 MF988720_p147 hypothetical protein phrog_2141 unknown function unknown function -1 115222 116220
ATN93379.1 MF988720_p7 terminase large subunit phrog_9526 terminase large subunit head and packaging 1 7705 8094
ATN93548.1 MF988720_p176 hypothetical protein singleton unknown function unknown function -1 138493 138690
ATN93526.1 MF988720_p154 hypothetical protein phrog_11006 unknown function unknown function -1 121202 121450
ATN93408.1 MF988720_p36 hypothetical protein phrog_14489 unknown function unknown function 1 31542 35732
ATN93497.1 MF988720_p125 hypothetical protein singleton unknown function unknown function 1 100720 101118
ATN93518.1 MF988720_p146 hypothetical protein phrog_671 nucleotide pyrophosphohydrolase other -1 114576 115268
ATN93510.1 MF988720_p138 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 110937 111449
ATN93512.1 MF988720_p140 hypothetical protein singleton unknown function unknown function -1 112312 112743
ATN93394.1 MF988720_p22 hypothetical protein phrog_20405 unknown function unknown function 1 19673 20260
ATN93396.1 MF988720_p24 hypothetical protein phrog_280 virion structural protein head and packaging 1 21664 22170
ATN93453.1 MF988720_p81 hypothetical protein phrog_32425 unknown function unknown function 1 73520 73804
ATN93549.1 MF988720_p177 hypothetical protein singleton unknown function unknown function -1 138690 139604
ATN93414.1 MF988720_p42 hypothetical protein phrog_2544 unknown function unknown function 1 43607 44686
ATN93463.1 MF988720_p91 hypothetical protein singleton unknown function unknown function 1 80056 80511
ATN93482.1 MF988720_p110 hypothetical protein singleton unknown function unknown function 1 92802 93125
ATN93400.1 MF988720_p28 hypothetical protein singleton unknown function unknown function 1 25780 26139
ATN93403.1 MF988720_p31 hypothetical protein singleton unknown function unknown function 1 28012 28185
ATN93390.1 MF988720_p18 hypothetical protein singleton unknown function unknown function 1 17921 18274
ATN93391.1 MF988720_p19 hypothetical protein phrog_2663 unknown function unknown function 1 18286 18816
ATN93430.1 MF988720_p58 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 58537 60918
ATN93415.1 MF988720_p43 baseplate wedge protein phrog_2340 endonuclease DNA, RNA and nucleotide metabolism 1 44750 45214
ATN93471.1 MF988720_p99 hypothetical protein singleton unknown function unknown function 1 87253 87528
ATN93511.1 MF988720_p139 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 111449 112312
ATN93536.1 MF988720_p164 hypothetical protein singleton unknown function unknown function -1 127922 128632
ATN93493.1 MF988720_p121 hypothetical protein singleton unknown function unknown function 1 97660 97959
ATN93469.1 MF988720_p97 hypothetical protein phrog_2467 unknown function unknown function 1 84947 86236
ATN93500.1 MF988720_p128 DNA adenine methylase phrog_56 DNA methyltransferase other -1 102108 103007
ATN93490.1 MF988720_p118 hypothetical protein phrog_6452 unknown function unknown function 1 96259 96975
ATN93416.1 MF988720_p44 lipoprotein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 45335 45745
ATN93450.1 MF988720_p78 hypothetical protein phrog_19367 unknown function unknown function 1 71457 71735
ATN93488.1 MF988720_p116 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 95101 95964
ATN93406.1 MF988720_p34 hypothetical protein phrog_1160 baseplate protein tail 1 30001 30783