| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG018224 |
Definition |
Stenotrophomonas phage DLP4, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pamexvirus; unclassified Pamexvirus. |
DB of origin |
NUCCORE |
Length |
63945 |
Host Name |
Stenotrophomonas maltophilia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
82 |
%GC |
65.05 |
Number of singletons |
10 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATS92194.1 | MG018224_p2 | virion structural protein | phrog_1082 | tail assembly protein | tail | 1 | 1117 | 2799 |
| ATS92241.1 | MG018224_p67 | hypothetical protein | phrog_21393 | unknown function | unknown function | -1 | 52903 | 53280 |
| ATS92200.1 | MG018224_p82 | tail fiber protein | phrog_687 | structural protein | head and packaging | 1 | 62490 | 63944 |
| ATS92228.1 | MG018224_p13 | i-spanin | phrog_739 | Rz-like spanin | lysis | 1 | 10350 | 10826 |
| ATS92252.1 | MG018224_p80 | hypothetical protein | phrog_4966 | unknown function | unknown function | 1 | 59768 | 60013 |
| ATS92190.1 | MG018224_p81 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 60117 | 62474 |
| ATS92264.1 | MG018224_p5 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 3854 | 4057 |
| ATS92222.1 | MG018224_p20 | hypothetical protein | phrog_16873 | unknown function | unknown function | -1 | 12491 | 13048 |
| ATS92213.1 | MG018224_p64 | virion structural protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 50549 | 51334 |
| ATS92256.1 | MG018224_p72 | hypothetical protein | phrog_30814 | unknown function | unknown function | 1 | 55657 | 55890 |
| ATS92234.1 | MG018224_p79 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 59283 | 59729 |
| ATS92205.1 | MG018224_p9 | tail assembly protein | phrog_9600 | tail assembly protein | tail | 1 | 7316 | 8260 |
| ATS92226.1 | MG018224_p24 | dihydrofolate reductase | phrog_13578 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 14817 | 15305 |
| ATS92237.1 | MG018224_p77 | tail terminator protein | phrog_179 | tail terminator | connector | 1 | 57892 | 58314 |
| ATS92263.1 | MG018224_p69 | hypothetical protein | phrog_11770 | unknown function | unknown function | -1 | 53636 | 53848 |
| ATS92216.1 | MG018224_p27 | nucleotide pyrophosphohydrolase | phrog_18404 | hydrolase | other | -1 | 16704 | 17477 |
| ATS92199.1 | MG018224_p52 | TerL | phrog_2 | terminase large subunit | head and packaging | 1 | 35045 | 36514 |
| ATS92224.1 | MG018224_p74 | virion structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 56591 | 57115 |
| ATS92202.1 | MG018224_p1 | virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 5 | 1135 |
| ATS92247.1 | MG018224_p19 | HIRAN domain-containing protein | phrog_18569 | unknown function | unknown function | -1 | 12186 | 12491 |
| ATS92231.1 | MG018224_p51 | RNA pseudouridine synthase | phrog_28587 | unknown function | unknown function | 1 | 34581 | 35045 |
| ATS92212.1 | MG018224_p59 | PseT | phrog_505 | polynucleotide kinase | other | 1 | 43271 | 44059 |
| ATS92219.1 | MG018224_p46 | TerS | phrog_4044 | terminase small subunit | head and packaging | 1 | 33021 | 33638 |
| ATS92215.1 | MG018224_p40 | hypothetical protein | phrog_17547 | unknown function | unknown function | -1 | 26538 | 27317 |
| ATS92223.1 | MG018224_p43 | hypothetical protein | phrog_18196 | unknown function | unknown function | -1 | 29178 | 29702 |
| ATS92265.1 | MG018224_p37 | hypothetical protein | phrog_7860 | unknown function | unknown function | -1 | 25248 | 25448 |
| ATS92221.1 | MG018224_p73 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 55957 | 56568 |
| ATS92229.1 | MG018224_p25 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 15290 | 15766 |
| ATS92195.1 | MG018224_p57 | hypothetical protein | phrog_1735 | unknown function | unknown function | 1 | 41131 | 42771 |
| ATS92201.1 | MG018224_p10 | tail fiber protein | singleton | unknown function | unknown function | 1 | 8263 | 9546 |
| ATS92197.1 | MG018224_p31 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 19526 | 21004 |
| ATS92239.1 | MG018224_p76 | virion structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 57487 | 57879 |
| ATS92196.1 | MG018224_p61 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 45042 | 46562 |
| ATS92227.1 | MG018224_p65 | YbiA | phrog_1017 | unknown function | unknown function | -1 | 51384 | 51869 |
| ATS92188.1 | MG018224_p62 | minor head protein | phrog_21789 | virion structural protein | head and packaging | 1 | 46562 | 50131 |
| ATS92198.1 | MG018224_p41 | Cas4 nuclease superfamily protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 27390 | 28868 |
| ATS92232.1 | MG018224_p23 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 14386 | 14832 |
| ATS92230.1 | MG018224_p30 | hypothetical protein | phrog_17205 | unknown function | unknown function | -1 | 18920 | 19384 |
| ATS92250.1 | MG018224_p63 | hypothetical protein | phrog_20070 | unknown function | unknown function | 1 | 50133 | 50405 |
| ATS92192.1 | MG018224_p6 | virion structural protein | phrog_1101 | tail protein | tail | 1 | 4044 | 6359 |
| ATS92235.1 | MG018224_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37557 | 37991 |
| ATS92193.1 | MG018224_p55 | NrdA | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 38200 | 40020 |
| ATS92254.1 | MG018224_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53856 | 54095 |
| ATS92217.1 | MG018224_p36 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 24575 | 25258 |
| ATS92220.1 | MG018224_p39 | DNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25793 | 26404 |
| ATS92246.1 | MG018224_p11 | hypothetical protein | phrog_14936 | unknown function | unknown function | 1 | 9543 | 9848 |
| ATS92255.1 | MG018224_p4 | virion structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 3624 | 3857 |
| ATS92261.1 | MG018224_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33701 | 33919 |
| ATS92268.1 | MG018224_p44 | hypothetical protein | phrog_19009 | unknown function | unknown function | 1 | 29904 | 30074 |
| ATS92209.1 | MG018224_p66 | hypothetical protein | phrog_18209 | unknown function | unknown function | -1 | 51909 | 52817 |
| ATS92233.1 | MG018224_p33 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 23405 | 23851 |
| ATS92240.1 | MG018224_p34 | hypothetical protein | phrog_18147 | unknown function | unknown function | -1 | 23848 | 24237 |
| ATS92267.1 | MG018224_p16 | hypothetical protein | phrog_27196 | unknown function | unknown function | -1 | 11417 | 11593 |
| ATS92206.1 | MG018224_p26 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 15766 | 16707 |
| ATS92210.1 | MG018224_p60 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 44059 | 44955 |
| ATS92242.1 | MG018224_p14 | o-spanin | phrog_812 | Rz-like spanin | lysis | 1 | 10639 | 11013 |
| ATS92211.1 | MG018224_p3 | FAD/FMN-containing dehydrogenase | phrog_778 | tail assembly protein | tail | 1 | 2799 | 3611 |
| ATS92244.1 | MG018224_p35 | hypothetical protein | phrog_18640 | unknown function | unknown function | -1 | 24234 | 24578 |
| ATS92191.1 | MG018224_p45 | primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 30071 | 32392 |
| ATS92259.1 | MG018224_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25445 | 25672 |
| ATS92218.1 | MG018224_p21 | hypothetical protein | phrog_17767 | unknown function | unknown function | -1 | 13171 | 13839 |
| ATS92269.1 | MG018224_p8 | tail assembly protein | singleton | unknown function | unknown function | 1 | 7142 | 7306 |
| ATS92260.1 | MG018224_p22 | hypothetical protein | phrog_35736 | unknown function | unknown function | -1 | 14040 | 14264 |
| ATS92251.1 | MG018224_p42 | hypothetical protein | phrog_17764 | unknown function | unknown function | -1 | 28918 | 29181 |
| ATS92245.1 | MG018224_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53292 | 53621 |
| ATS92262.1 | MG018224_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34359 | 34577 |
| ATS92225.1 | MG018224_p12 | endolysin | phrog_465 | endolysin | lysis | 1 | 9845 | 10339 |
| ATS92189.1 | MG018224_p32 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 21001 | 23376 |
| ATS92243.1 | MG018224_p75 | virion structural protein | phrog_161 | head closure Hc1 | connector | 1 | 57117 | 57485 |
| ATS92249.1 | MG018224_p15 | membrane protein | phrog_6420 | unknown function | unknown function | 1 | 11010 | 11285 |
| ATS92236.1 | MG018224_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42840 | 43274 |
| ATS92204.1 | MG018224_p56 | NrdB | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 40028 | 41020 |
| ATS92266.1 | MG018224_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34168 | 34362 |
| ATS92248.1 | MG018224_p18 | hypothetical protein | phrog_17853 | unknown function | unknown function | -1 | 11918 | 12202 |
| ATS92203.1 | MG018224_p29 | hypothetical protein | phrog_11422 | unknown function | unknown function | -1 | 17786 | 18805 |
| ATS92207.1 | MG018224_p78 | major tail structural protein | phrog_290 | minor tail protein | tail | 1 | 58337 | 59278 |
| ATS92208.1 | MG018224_p71 | major head protein | phrog_212 | major head protein | head and packaging | 1 | 54657 | 55589 |
| ATS92238.1 | MG018224_p53 | hypothetical protein | phrog_23866 | unknown function | unknown function | 1 | 37156 | 37560 |
| ATS92257.1 | MG018224_p17 | hypothetical protein | phrog_8293 | unknown function | unknown function | -1 | 11661 | 11891 |
| ATS92214.1 | MG018224_p7 | tail assembly protein | phrog_19976 | tail assembly protein | tail | 1 | 6359 | 7138 |
| ATS92253.1 | MG018224_p48 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 33929 | 34171 |
| ATS92258.1 | MG018224_p28 | hypothetical protein | phrog_34935 | unknown function | unknown function | -1 | 17553 | 17783 |