Genomic map of Pseudomonas phage nickie (MG018927)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG018927
Definition
Pseudomonas phage nickie, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nickievirus; Pseudomonas virus nickie.
DB of origin
NUCCORE
Length
112225
Host Name
Pseudomonas syringae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
161
%GC
57.35
Number of singletons
86
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATW57977.1 MG018927_p42 lysozyme phrog_7 endolysin lysis 1 39218 39721
ATW58006.1 MG018927_p71 chromosome segregation protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 64514 66451
ATW57991.1 MG018927_p56 hypothetical protein singleton unknown function unknown function 1 47618 48313
ATW58050.1 MG018927_p115 hypothetical protein phrog_28861 unknown function unknown function 1 90032 90286
ATW58051.1 MG018927_p116 hypothetical protein singleton unknown function unknown function 1 90286 90450
ATW57973.1 MG018927_p38 GDSL-like lipase singleton unknown function unknown function 1 34736 37099
ATW57944.1 MG018927_p9 hypothetical protein singleton unknown function unknown function 1 6846 7187
ATW58029.1 MG018927_p94 hypothetical protein singleton unknown function unknown function 1 80627 80896
ATW57971.1 MG018927_p36 hypothetical protein phrog_1158 tail assembly chaperone tail 1 33998 34411
ATW58073.1 MG018927_p138 hypothetical protein singleton unknown function unknown function 1 101485 101781
ATW57943.1 MG018927_p8 hypothetical protein phrog_886 ABC transporter ATP-binding subunit moron, auxiliary metabolic gene and host takeover 1 5968 6849
ATW58008.1 MG018927_p73 hypothetical protein singleton unknown function unknown function 1 67151 68029
ATW58001.1 MG018927_p66 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 60355 61311
ATW57939.1 MG018927_p4 hypothetical protein singleton unknown function unknown function 1 4168 4329
ATW58042.1 MG018927_p107 hypothetical protein singleton unknown function unknown function 1 86729 87415
ATW57976.1 MG018927_p41 holin phrog_920 holin lysis 1 39022 39231
ATW58025.1 MG018927_p90 hypothetical protein singleton unknown function unknown function 1 79645 79827
ATW58009.1 MG018927_p74 homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 68026 68556
ATW57942.1 MG018927_p7 hypothetical protein singleton unknown function unknown function 1 5646 5981
ATW58038.1 MG018927_p103 hypothetical protein phrog_5200 HNH endonuclease DNA, RNA and nucleotide metabolism 1 85112 85648
ATW57945.1 MG018927_p10 hypothetical protein phrog_867 DNA binding domain DNA, RNA and nucleotide metabolism 1 7442 8155
ATW58020.1 MG018927_p85 dihydrofolate reductase singleton unknown function unknown function 1 76490 77332
ATW57978.1 MG018927_p43 hypothetical protein phrog_89 Rz-like spanin lysis 1 39718 40167
ATW57950.1 MG018927_p15 hypothetical protein phrog_916 unknown function unknown function 1 13043 13684
ATW58059.1 MG018927_p124 hypothetical protein phrog_11659 unknown function unknown function 1 94228 94413
ATW58062.1 MG018927_p127 hypothetical protein phrog_17488 unknown function unknown function 1 95426 95977
ATW58046.1 MG018927_p111 hypothetical protein singleton unknown function unknown function 1 88525 88716
ATW57980.1 MG018927_p45 hypothetical protein phrog_2500 unknown function unknown function 1 41213 41938
ATW58033.1 MG018927_p98 hypothetical protein singleton unknown function unknown function 1 82645 83136
ATW57993.1 MG018927_p58 hypothetical protein singleton unknown function unknown function 1 49698 49883
ATW58052.1 MG018927_p117 hypothetical protein phrog_1934 unknown function unknown function 1 90450 90884
ATW58015.1 MG018927_p80 hypothetical protein singleton unknown function unknown function 1 73268 73834
ATW57964.1 MG018927_p29 hypothetical protein singleton unknown function unknown function 1 26539 27153
ATW58077.1 MG018927_p142 hypothetical protein singleton unknown function unknown function 1 103029 103331
ATW58075.1 MG018927_p140 hypothetical protein singleton unknown function unknown function 1 102190 102537
ATW58091.1 MG018927_p156 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 109156 109416
ATW57961.1 MG018927_p26 hypothetical protein phrog_18 minor tail protein tail 1 21623 22261
ATW57958.1 MG018927_p23 hypothetical protein phrog_1131 unknown function unknown function 1 17384 17644
ATW57979.1 MG018927_p44 PhoH-like protein phrog_170 PhoH-like phosphate starvation-inducible other 1 40281 41051
ATW57952.1 MG018927_p17 hypothetical protein singleton unknown function unknown function 1 14453 15157
ATW57984.1 MG018927_p49 hypothetical protein phrog_9037 unknown function unknown function 1 44113 44403
ATW58070.1 MG018927_p135 hypothetical protein singleton unknown function unknown function 1 99630 99980
ATW58002.1 MG018927_p67 recombinase A phrog_97 UvsX-like recombinase other 1 61323 62441
ATW57994.1 MG018927_p59 aerobic cobaltochelatase subunit phrog_1576 unknown function unknown function 1 49981 52065
ATW57956.1 MG018927_p21 hypothetical protein phrog_2175 protein with Ig domain other 1 16341 16883
ATW58000.1 MG018927_p65 hypothetical protein phrog_1192 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 59452 60291
ATW58031.1 MG018927_p96 hypothetical protein singleton unknown function unknown function 1 81560 82003
ATW58072.1 MG018927_p137 hypothetical protein singleton unknown function unknown function 1 100237 100392
ATW57963.1 MG018927_p28 tail protein phrog_31 central tail fiber J tail 1 22625 26557
ATW58069.1 MG018927_p134 hypothetical protein singleton unknown function unknown function 1 99252 99542
ATW57975.1 MG018927_p40 GDSL-like lipase singleton unknown function unknown function 1 37469 38836
ATW58018.1 MG018927_p83 hypothetical protein singleton unknown function unknown function 1 75207 75512
ATW57965.1 MG018927_p30 hypothetical protein singleton unknown function unknown function 1 27155 27649
ATW57990.1 MG018927_p55 hypothetical protein singleton unknown function unknown function 1 46773 47546
ATW58076.1 MG018927_p141 hypothetical protein singleton unknown function unknown function 1 102534 102752
ATW58086.1 MG018927_p151 hypothetical protein singleton unknown function unknown function 1 107102 107377
ATW57959.1 MG018927_p24 tail tape-measure protein phrog_1292 tail length tape measure protein tail 1 17647 21195
ATW58023.1 MG018927_p88 hypothetical protein singleton unknown function unknown function 1 78724 79239
ATW57951.1 MG018927_p16 hypothetical protein phrog_912 unknown function unknown function 1 13690 14475
ATW58019.1 MG018927_p84 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 75516 76493
ATW58095.1 MG018927_p160 tellurite resistance protein phrog_632 tellurite resistance moron, auxiliary metabolic gene and host takeover -1 111269 111712
ATW58045.1 MG018927_p110 hypothetical protein singleton unknown function unknown function 1 88310 88537
ATW58094.1 MG018927_p159 hypothetical protein singleton unknown function unknown function -1 111096 111269
ATW58044.1 MG018927_p109 hypothetical protein phrog_15422 unknown function unknown function 1 88104 88313
ATW58085.1 MG018927_p150 hypothetical protein singleton unknown function unknown function 1 106890 107105
ATW58081.1 MG018927_p146 hypothetical protein singleton unknown function unknown function 1 105666 105821
ATW57936.1 MG018927_p1 hypothetical protein singleton unknown function unknown function 1 253 849
ATW57987.1 MG018927_p52 hypothetical protein phrog_13236 unknown function unknown function 1 45151 45354
ATW57946.1 MG018927_p11 large terminase phrog_2 terminase large subunit head and packaging 1 8155 9423
ATW58083.1 MG018927_p148 hypothetical protein singleton unknown function unknown function 1 106300 106641
ATW57999.1 MG018927_p64 hypothetical protein singleton unknown function unknown function 1 58745 59269
ATW58048.1 MG018927_p113 hypothetical protein singleton unknown function unknown function 1 89365 89583
ATW58063.1 MG018927_p128 hypothetical protein singleton unknown function unknown function 1 95974 96399
ATW57982.1 MG018927_p47 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 42268 43737
ATW58036.1 MG018927_p101 hypothetical protein singleton unknown function unknown function 1 84734 84946
ATW58035.1 MG018927_p100 hypothetical protein phrog_3932 unknown function unknown function 1 83841 84677
ATW58068.1 MG018927_p133 hypothetical protein singleton unknown function unknown function 1 98569 99081
ATW58010.1 MG018927_p75 crossover junction endodeoxyribonuclease phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 68553 69119
ATW57969.1 MG018927_p34 GDSL-like lipase phrog_6102 lipase moron, auxiliary metabolic gene and host takeover 1 29071 31137
ATW57966.1 MG018927_p31 hypothetical protein singleton unknown function unknown function 1 27649 28179
ATW58071.1 MG018927_p136 hypothetical protein singleton unknown function unknown function 1 99970 100236
ATW58090.1 MG018927_p155 hypothetical protein singleton unknown function unknown function -1 108892 109116
ATW58013.1 MG018927_p78 hypothetical protein singleton unknown function unknown function 1 72500 72865
ATW58053.1 MG018927_p118 hypothetical protein singleton unknown function unknown function 1 90995 91213
ATW57962.1 MG018927_p27 peptidoglycan hydrolase phrog_329 minor tail protein tail 1 22261 22641
ATW57986.1 MG018927_p51 hypothetical protein singleton unknown function unknown function 1 44909 45154
ATW57948.1 MG018927_p13 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 11105 11986
ATW57985.1 MG018927_p50 hypothetical protein phrog_14718 unknown function unknown function 1 44400 44741
ATW57940.1 MG018927_p5 ParB-like nuclease domain protein phrog_930 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 4322 5014
ATW57949.1 MG018927_p14 major capsid protein phrog_212 major head protein head and packaging 1 12056 12958
ATW58078.1 MG018927_p143 hypothetical protein singleton unknown function unknown function -1 103653 103844
ATW58055.1 MG018927_p120 hypothetical protein singleton unknown function unknown function 1 91752 93116
ATW57967.1 MG018927_p32 hypothetical protein singleton unknown function unknown function 1 28220 28654
ATW58066.1 MG018927_p131 hypothetical protein singleton unknown function unknown function 1 97521 97721
ATW57974.1 MG018927_p39 hypothetical protein phrog_4770 unknown function unknown function 1 37200 37466
ATW58005.1 MG018927_p70 calcineurin-like phosphoesterase phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 63429 64517
ATW58065.1 MG018927_p130 hypothetical protein singleton unknown function unknown function 1 97054 97524
ATW58022.1 MG018927_p87 thymidylate kinase phrog_168 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 78032 78640
ATW58060.1 MG018927_p125 hypothetical protein phrog_5443 unknown function unknown function 1 94576 94947
ATW58067.1 MG018927_p132 hypothetical protein singleton unknown function unknown function 1 98195 98572
ATW58088.1 MG018927_p153 hypothetical protein phrog_15896 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 107855 108187
ATW58092.1 MG018927_p157 hypothetical protein phrog_1040 peptidase HslV family other 1 109507 110034
ATW58037.1 MG018927_p102 hypothetical protein phrog_8738 unknown function unknown function 1 84943 85131
ATW57998.1 MG018927_p63 hypothetical protein phrog_1069 unknown function unknown function 1 57461 58741
ATW57989.1 MG018927_p54 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 45643 46749
ATW57960.1 MG018927_p25 hypothetical protein phrog_384 virion structural protein head and packaging 1 21208 21573
ATW58021.1 MG018927_p86 hypothetical protein phrog_8902 unknown function unknown function 1 77379 78035
ATW58003.1 MG018927_p68 hypothetical protein singleton unknown function unknown function 1 62438 62821
ATW57992.1 MG018927_p57 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 48310 49701
ATW57937.1 MG018927_p2 ATP-dependent RNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 1624 3303
ATW58041.1 MG018927_p106 hypothetical protein singleton unknown function unknown function 1 86314 86712
ATW58027.1 MG018927_p92 hypothetical protein phrog_4568 unknown function unknown function 1 80024 80224
ATW58080.1 MG018927_p145 hypothetical protein singleton unknown function unknown function 1 105197 105661
ATW57983.1 MG018927_p48 hypothetical protein singleton unknown function unknown function 1 43817 44116
ATW58087.1 MG018927_p152 hypothetical protein phrog_22676 unknown function unknown function 1 107377 107865
ATW58082.1 MG018927_p147 hypothetical protein singleton unknown function unknown function 1 105944 106303
ATW58012.1 MG018927_p77 hypothetical protein singleton unknown function unknown function 1 71592 72500
ATW58014.1 MG018927_p79 hypothetical protein singleton unknown function unknown function 1 72869 73264
ATW58064.1 MG018927_p129 hypothetical protein singleton unknown function unknown function 1 96491 97054
ATW58030.1 MG018927_p95 hypothetical protein singleton unknown function unknown function 1 81092 81487
ATW58084.1 MG018927_p149 hypothetical protein singleton unknown function unknown function 1 106641 106886
ATW57957.1 MG018927_p22 hypothetical protein phrog_893 unknown function unknown function 1 16935 17312
ATW58089.1 MG018927_p154 hypothetical protein singleton unknown function unknown function 1 108304 108903
ATW57947.1 MG018927_p12 portal protein phrog_145 portal protein head and packaging 1 9483 11081
ATW57997.1 MG018927_p62 DNA polymerase III subunit alpha phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism 1 53996 57388
ATW58024.1 MG018927_p89 hypothetical protein singleton unknown function unknown function 1 79251 79658
ATW58096.1 MG018927_p161 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism -1 111740 112213
ATW58079.1 MG018927_p144 hypothetical protein singleton unknown function unknown function 1 104068 104622
ATW58049.1 MG018927_p114 hypothetical protein singleton unknown function unknown function 1 89691 90032
ATW58043.1 MG018927_p108 hypothetical protein singleton unknown function unknown function 1 87489 88100
ATW58056.1 MG018927_p121 hypothetical protein singleton unknown function unknown function 1 93121 93513
ATW58026.1 MG018927_p91 hypothetical protein singleton unknown function unknown function 1 79824 80027
ATW57968.1 MG018927_p33 hypothetical protein singleton unknown function unknown function 1 28638 29018
ATW58057.1 MG018927_p122 hypothetical protein singleton unknown function unknown function 1 93510 93926
ATW58039.1 MG018927_p104 hypothetical protein singleton unknown function unknown function 1 85755 86036
ATW57972.1 MG018927_p37 hypothetical protein phrog_4770 unknown function unknown function 1 34466 34732
ATW57955.1 MG018927_p20 hypothetical protein phrog_921 unknown function unknown function 1 15956 16333
ATW58093.1 MG018927_p158 hypothetical protein singleton unknown function unknown function -1 110665 110841
ATW58028.1 MG018927_p93 hypothetical protein singleton unknown function unknown function 1 80214 80630
ATW58047.1 MG018927_p112 hypothetical protein singleton unknown function unknown function 1 88713 89336
ATW58074.1 MG018927_p139 hypothetical protein singleton unknown function unknown function 1 101784 102044
ATW57953.1 MG018927_p18 hypothetical protein phrog_911 unknown function unknown function 1 15157 15516
ATW58040.1 MG018927_p105 hypothetical protein singleton unknown function unknown function 1 86033 86317
ATW57995.1 MG018927_p60 aerobic cobaltochelatase subunit phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover 1 52156 53382
ATW58032.1 MG018927_p97 DNA polymerase III subunit epsilon phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 82004 82570
ATW57988.1 MG018927_p53 hypothetical protein singleton unknown function unknown function 1 45433 45642
ATW58004.1 MG018927_p69 hypothetical protein phrog_2105 unknown function unknown function 1 62877 63353
ATW57981.1 MG018927_p46 hypothetical protein singleton unknown function unknown function 1 42006 42275
ATW57996.1 MG018927_p61 hypothetical protein phrog_3616 unknown function unknown function 1 53452 53994
ATW58054.1 MG018927_p119 hypothetical protein phrog_21276 unknown function unknown function 1 91204 91749
ATW57938.1 MG018927_p3 ParB-like nuclease domain protein phrog_723 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 3383 4171
ATW57954.1 MG018927_p19 tail-component phrog_5 tail completion or Neck1 protein connector 1 15507 15959
ATW58011.1 MG018927_p76 ribonucleoside-diphosphate reductase 1 subunit alpha phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 69208 71469
ATW58007.1 MG018927_p72 hypothetical protein singleton unknown function unknown function 1 66459 67154
ATW58034.1 MG018927_p99 hypothetical protein phrog_3809 unknown function unknown function 1 83133 83735
ATW58016.1 MG018927_p81 ribonucleoside-diphosphate reductase subunit beta phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 73846 74862
ATW57970.1 MG018927_p35 particle-associated lyase singleton unknown function unknown function 1 31140 34001
ATW58017.1 MG018927_p82 hypothetical protein singleton unknown function unknown function 1 74946 75089
ATW57941.1 MG018927_p6 ABC transporter phrog_293 ABC transporter moron, auxiliary metabolic gene and host takeover 1 5011 5649
ATW58058.1 MG018927_p123 hypothetical protein singleton unknown function unknown function 1 93923 94231
ATW58061.1 MG018927_p126 hypothetical protein singleton unknown function unknown function 1 94986 95330