| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG029512 |
Definition |
Staphylococcus phage phiSa2wa_st59, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus. |
DB of origin |
NUCCORE |
Length |
42133 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
33.27 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUM57895.1 | MG029512_p22 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 8289 | 8825 |
| AUM57892.1 | MG029512_p19 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 7444 | 7605 |
| AUM57945.1 | MG029512_p72 | Panton-Valentine leukocidin chain F precursor | phrog_965 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 41030 | 42013 |
| AUM57877.1 | MG029512_p4 | hypothetical protein | phrog_1176 | unknown function | unknown function | -1 | 2150 | 2353 |
| AUM57911.1 | MG029512_p38 | hypothetical protein | phrog_4872 | unknown function | unknown function | 1 | 15110 | 15271 |
| AUM57882.1 | MG029512_p9 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | 1 | 4001 | 4444 |
| AUM57919.1 | MG029512_p46 | hypothetical protein | phrog_386 | unknown function | unknown function | 1 | 17395 | 17595 |
| AUM57917.1 | MG029512_p44 | hypothetical protein | phrog_5788 | unknown function | unknown function | 1 | 16586 | 16738 |
| AUM57924.1 | MG029512_p51 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 20719 | 21906 |
| AUM57914.1 | MG029512_p41 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 16071 | 16259 |
| AUM57935.1 | MG029512_p62 | hypothetical protein | phrog_1963 | unknown function | unknown function | 1 | 26887 | 27024 |
| AUM57910.1 | MG029512_p37 | hypothetical protein | phrog_8718 | unknown function | unknown function | 1 | 14828 | 15109 |
| AUM57942.1 | MG029512_p69 | holin | phrog_263 | holin | lysis | 1 | 37894 | 38241 |
| AUM57893.1 | MG029512_p20 | hypothetical protein | phrog_2182 | unknown function | unknown function | 1 | 7694 | 8011 |
| AUM57938.1 | MG029512_p65 | hypothetical protein | phrog_1786 | minor head protein | head and packaging | 1 | 33122 | 36907 |
| AUM57875.1 | MG029512_p2 | hypothetical protein | phrog_716 | Na/K ATPase | other | 1 | 1357 | 1971 |
| AUM57885.1 | MG029512_p12 | hypothetical protein | phrog_7496 | unknown function | unknown function | 1 | 4858 | 5049 |
| AUM57883.1 | MG029512_p10 | hypothetical protein | phrog_1263 | unknown function | unknown function | 1 | 4459 | 4599 |
| AUM57896.1 | MG029512_p23 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8826 | 9476 |
| AUM57937.1 | MG029512_p64 | hypothetical protein | phrog_202 | distal tail protein Dit | tail | 1 | 31622 | 33106 |
| AUM57918.1 | MG029512_p45 | hypothetical protein | phrog_5652 | unknown function | unknown function | 1 | 16745 | 17395 |
| AUM57909.1 | MG029512_p36 | hypothetical protein | phrog_3898 | unknown function | unknown function | 1 | 14636 | 14827 |
| AUM57881.1 | MG029512_p8 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3725 | 3988 |
| AUM57912.1 | MG029512_p39 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 15286 | 15792 |
| AUM57908.1 | MG029512_p35 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 14404 | 14664 |
| AUM57902.1 | MG029512_p29 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 12799 | 12957 |
| AUM57930.1 | MG029512_p57 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 24717 | 25121 |
| AUM57939.1 | MG029512_p66 | hypothetical protein | phrog_1399 | unknown function | unknown function | 1 | 36897 | 37049 |
| AUM57916.1 | MG029512_p43 | transcriptional activator | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 16422 | 16586 |
| AUM57879.1 | MG029512_p6 | hypothetical protein | phrog_6385 | unknown function | unknown function | -1 | 2704 | 2859 |
| AUM57894.1 | MG029512_p21 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 7944 | 8276 |
| AUM57904.1 | MG029512_p31 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 13201 | 13605 |
| AUM57934.1 | MG029512_p61 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 26486 | 26836 |
| AUM57887.1 | MG029512_p14 | hypothetical protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 5339 | 6091 |
| AUM57880.1 | MG029512_p7 | hypothetical protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2871 | 3599 |
| AUM57923.1 | MG029512_p50 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 19042 | 20703 |
| AUM57915.1 | MG029512_p42 | hypothetical protein | phrog_3885 | unknown function | unknown function | 1 | 16234 | 16434 |
| AUM57933.1 | MG029512_p60 | hypothetical protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 26296 | 26436 |
| AUM57876.1 | MG029512_p3 | hypothetical protein | phrog_787 | unknown function | unknown function | -1 | 1968 | 2093 |
| AUM57874.1 | MG029512_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 26 | 1231 |
| AUM57889.1 | MG029512_p16 | hypothetical protein | phrog_6623 | unknown function | unknown function | 1 | 6598 | 6924 |
| AUM57929.1 | MG029512_p56 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 24358 | 24720 |
| AUM57922.1 | MG029512_p49 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 18656 | 19045 |
| AUM57943.1 | MG029512_p70 | amidase | phrog_489 | endolysin | lysis | 1 | 38252 | 39706 |
| AUM57932.1 | MG029512_p59 | major tail protein | phrog_88 | major tail protein | tail | 1 | 25526 | 26170 |
| AUM57890.1 | MG029512_p17 | hypothetical protein | phrog_4309 | unknown function | unknown function | 1 | 6921 | 7139 |
| AUM57903.1 | MG029512_p30 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 12961 | 13191 |
| AUM57944.1 | MG029512_p71 | Panton-Valentine leukocidin chain S precursor | phrog_965 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 40087 | 41034 |
| AUM57878.1 | MG029512_p5 | hypothetical protein | phrog_5192 | unknown function | unknown function | -1 | 2532 | 2744 |
| AUM57928.1 | MG029512_p55 | hypothetical protein | phrog_749 | unknown function | unknown function | 1 | 24078 | 24374 |
| AUM57906.1 | MG029512_p33 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 13796 | 14152 |
| AUM57927.1 | MG029512_p54 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 23816 | 24100 |
| AUM57940.1 | MG029512_p67 | hypothetical protein | phrog_1747 | unknown function | unknown function | 1 | 37096 | 37383 |
| AUM57886.1 | MG029512_p13 | hypothetical protein | phrog_6634 | unknown function | unknown function | -1 | 5051 | 5278 |
| AUM57900.1 | MG029512_p27 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 11243 | 12004 |
| AUM57931.1 | MG029512_p58 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 25118 | 25525 |
| AUM57907.1 | MG029512_p34 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 14156 | 14398 |
| AUM57898.1 | MG029512_p25 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 9928 | 10596 |
| AUM57920.1 | MG029512_p47 | transcriptional activator | phrog_36 | transcriptional regulator | transcription regulation | 1 | 17623 | 18039 |
| AUM57941.1 | MG029512_p68 | hypothetical protein | phrog_3700 | unknown function | unknown function | 1 | 37439 | 37813 |
| AUM57891.1 | MG029512_p18 | hypothetical protein | phrog_534 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7169 | 7432 |
| AUM57899.1 | MG029512_p26 | hypothetical protein | phrog_33458 | unknown function | unknown function | -1 | 10782 | 11198 |
| AUM57913.1 | MG029512_p40 | hypothetical protein | phrog_2027 | unknown function | unknown function | 1 | 15829 | 16074 |
| AUM57925.1 | MG029512_p52 | prohead protease | phrog_94 | head maturation protease | head and packaging | 1 | 21878 | 22627 |
| AUM57905.1 | MG029512_p32 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 13610 | 13795 |
| AUM57897.1 | MG029512_p24 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 9473 | 9916 |
| AUM57888.1 | MG029512_p15 | hypothetical protein | phrog_6175 | unknown function | unknown function | 1 | 6104 | 6364 |
| AUM57884.1 | MG029512_p11 | hypothetical protein | phrog_3505 | unknown function | unknown function | -1 | 4592 | 4801 |
| AUM57936.1 | MG029512_p63 | tail tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 27081 | 31622 |
| AUM57901.1 | MG029512_p28 | DNA replication protein C | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 12017 | 12802 |
| AUM57926.1 | MG029512_p53 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 22651 | 23796 |
| AUM57921.1 | MG029512_p48 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18271 | 18570 |