Genomic map of Shigella phage vB_SflS-ISF001 (MG049919)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG049919
Definition
Shigella phage vB_SflS-ISF001, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus ISF001.
DB of origin
NUCCORE
Length
50552
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
78
%GC
45.58
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATN94094.1 MG049919_p16 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 11411 11824
ATN94128.1 MG049919_p50 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other -1 37361 37933
ATN94113.1 MG049919_p35 hypothetical protein phrog_264 major head protein head and packaging -1 27795 28754
ATN94089.1 MG049919_p11 hypothetical protein phrog_824 unknown function unknown function -1 5523 5939
ATN94086.1 MG049919_p8 hypothetical protein phrog_2180 unknown function unknown function -1 4210 4434
ATN94103.1 MG049919_p25 tail fiber protein phrog_14 minor tail protein tail -1 21118 21471
ATN94126.1 MG049919_p48 hypothetical protein phrog_9709 unknown function unknown function -1 36738 37082
ATN94135.1 MG049919_p57 hypothetical protein phrog_7116 unknown function unknown function -1 40688 41194
ATN94144.1 MG049919_p66 hypothetical protein phrog_11083 unknown function unknown function -1 43928 44503
ATN94106.1 MG049919_p28 hypothetical protein phrog_569 tail length tape measure protein tail -1 24704 25021
ATN94125.1 MG049919_p47 hypothetical protein phrog_303 unknown function unknown function -1 36508 36738
ATN94081.1 MG049919_p3 hypothetical protein phrog_1804 Rz-like spanin lysis -1 1035 1436
ATN94084.1 MG049919_p6 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 2498 3649
ATN94149.1 MG049919_p71 hypothetical protein phrog_35282 unknown function unknown function 1 46810 46983
ATN94119.1 MG049919_p41 terminase large subunit phrog_38 terminase large subunit head and packaging -1 33368 34936
ATN94095.1 MG049919_p17 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 11870 12517
ATN94148.1 MG049919_p70 hypothetical protein phrog_20265 unknown function unknown function 1 46433 46813
ATN94107.1 MG049919_p29 major tail protein phrog_584 major tail protein tail -1 25136 25804
ATN94123.1 MG049919_p45 hypothetical protein phrog_6666 unknown function unknown function -1 35979 36140
ATN94098.1 MG049919_p20 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover 1 14417 15373
ATN94122.1 MG049919_p44 hypothetical protein phrog_2919 unknown function unknown function -1 35813 35998
ATN94127.1 MG049919_p49 hypothetical protein phrog_10456 unknown function unknown function -1 37079 37288
ATN94140.1 MG049919_p62 hypothetical protein phrog_11449 unknown function unknown function -1 42538 42768
ATN94108.1 MG049919_p30 hypothetical protein phrog_179 tail terminator connector -1 25807 26205
ATN94100.1 MG049919_p22 tail assembly protein phrog_32 tail assembly protein tail -1 18929 19528
ATN94154.1 MG049919_p76 hypothetical protein phrog_9085 unknown function unknown function 1 48402 48614
ATN94131.1 MG049919_p53 hypothetical protein phrog_11330 unknown function unknown function -1 39163 39381
ATN94124.1 MG049919_p46 hypothetical protein phrog_4927 unknown function unknown function -1 36305 36508
ATN94143.1 MG049919_p65 hypothetical protein phrog_18675 unknown function unknown function -1 43586 43915
ATN94150.1 MG049919_p72 hypothetical protein phrog_11577 unknown function unknown function 1 47055 47426
ATN94146.1 MG049919_p68 hypothetical protein phrog_7717 unknown function unknown function 1 45971 46156
ATN94152.1 MG049919_p74 hypothetical protein phrog_10555 unknown function unknown function 1 47637 47957
ATN94147.1 MG049919_p69 hypothetical protein phrog_3623 unknown function unknown function 1 46172 46357
ATN94134.1 MG049919_p56 hypothetical protein phrog_5579 unknown function unknown function -1 40539 40688
ATN94132.1 MG049919_p54 hypothetical protein phrog_10580 unknown function unknown function -1 39530 40168
ATN94120.1 MG049919_p42 terminase small subunit phrog_606 terminase small subunit head and packaging -1 34975 35499
ATN94142.1 MG049919_p64 hypothetical protein phrog_7421 unknown function unknown function -1 43320 43514
ATN94093.1 MG049919_p15 tail fiber phrog_1980 tail fiber protein tail 1 9598 11382
ATN94091.1 MG049919_p13 hypothetical protein phrog_2856 transcriptional regulator transcription regulation 1 8048 8500
ATN94117.1 MG049919_p39 minor capsid protein phrog_324 head morphogenesis head and packaging -1 31277 32038
ATN94097.1 MG049919_p19 lipoprotein phrog_4281 unknown function unknown function 1 14184 14414
ATN94099.1 MG049919_p21 tail fiber protein phrog_31 central tail fiber J tail -1 15468 18851
ATN94109.1 MG049919_p31 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 26195 26638
ATN94118.1 MG049919_p40 hypothetical protein phrog_146 portal protein head and packaging -1 32028 33311
ATN94083.1 MG049919_p5 holin phrog_2877 holin lysis -1 1924 2139
ATN94104.1 MG049919_p26 tail length tape measure protein phrog_24 tail length tape measure protein tail -1 21474 24347
ATN94112.1 MG049919_p34 hypothetical protein phrog_2716 unknown function unknown function -1 27455 27745
ATN94130.1 MG049919_p52 hypothetical protein phrog_10642 unknown function unknown function -1 38659 39105
ATN94138.1 MG049919_p60 hypothetical protein phrog_8628 unknown function unknown function -1 42027 42200
ATN94079.1 MG049919_p1 hypothetical protein phrog_2794 unknown function unknown function 1 209 616
ATN94088.1 MG049919_p10 DNA adenine methyltransferase phrog_111 DNA methyltransferase other -1 4742 5455
ATN94133.1 MG049919_p55 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism -1 40173 40460
ATN94085.1 MG049919_p7 hypothetical protein phrog_4596 unknown function unknown function -1 3728 4015
ATN94116.1 MG049919_p38 major head subunit precursor phrog_530 head maturation protease head and packaging -1 30162 31274
ATN94136.1 MG049919_p58 hypothetical protein phrog_9595 unknown function unknown function -1 41266 41754
ATN94155.1 MG049919_p77 hypothetical protein phrog_2684 unknown function unknown function 1 48695 49057
ATN94145.1 MG049919_p67 DNA methylase phrog_757 DNA methyltransferase other 1 45206 45910
ATN94096.1 MG049919_p18 exodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 12592 13656
ATN94087.1 MG049919_p9 hypothetical protein phrog_2676 unknown function unknown function -1 4486 4734
ATN94114.1 MG049919_p36 hypothetical protein phrog_1989 unknown function unknown function -1 28847 29614
ATN94090.1 MG049919_p12 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 5936 7948
ATN94121.1 MG049919_p43 hypothetical protein phrog_5976 unknown function unknown function -1 35584 35811
ATN94139.1 MG049919_p61 hypothetical protein phrog_6080 unknown function unknown function -1 42304 42531
ATN94102.1 MG049919_p24 minor tail protein phrog_18 minor tail protein tail -1 20256 21038
ATN94141.1 MG049919_p63 hypothetical protein phrog_12951 unknown function unknown function -1 42847 43317
ATN94151.1 MG049919_p73 hypothetical protein phrog_6503 unknown function unknown function 1 47419 47619
ATN94080.1 MG049919_p2 hypothetical protein phrog_27210 unknown function unknown function 1 806 1021
ATN94082.1 MG049919_p4 endolysin phrog_7 endolysin lysis -1 1436 1924
ATN94110.1 MG049919_p32 hypothetical protein phrog_161 head closure Hc1 connector -1 26631 27002
ATN94105.1 MG049919_p27 hypothetical protein phrog_680 tail length tape measure protein tail -1 24387 24656
ATN94156.1 MG049919_p78 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism 1 49188 50009
ATN94092.1 MG049919_p14 DNA primase/helicase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 8577 9497
ATN94137.1 MG049919_p59 hypothetical protein phrog_11551 unknown function unknown function -1 41826 42017
ATN94129.1 MG049919_p51 morphogenetic protein phrog_415 polynucleotide kinase other -1 38042 38575
ATN94101.1 MG049919_p23 minor tail protein phrog_30 minor tail protein tail -1 19525 20259
ATN94153.1 MG049919_p75 hypothetical protein phrog_4344 unknown function unknown function 1 48174 48398
ATN94111.1 MG049919_p33 hypothetical protein phrog_302 virion structural protein head and packaging -1 26999 27412
ATN94115.1 MG049919_p37 hypothetical protein phrog_1989 unknown function unknown function -1 29674 30150