| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG049919 |
Definition |
Shigella phage vB_SflS-ISF001, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus ISF001. |
DB of origin |
NUCCORE |
Length |
50552 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
45.58 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATN94094.1 | MG049919_p16 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 11411 | 11824 |
| ATN94128.1 | MG049919_p50 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 37361 | 37933 |
| ATN94113.1 | MG049919_p35 | hypothetical protein | phrog_264 | major head protein | head and packaging | -1 | 27795 | 28754 |
| ATN94089.1 | MG049919_p11 | hypothetical protein | phrog_824 | unknown function | unknown function | -1 | 5523 | 5939 |
| ATN94086.1 | MG049919_p8 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 4210 | 4434 |
| ATN94103.1 | MG049919_p25 | tail fiber protein | phrog_14 | minor tail protein | tail | -1 | 21118 | 21471 |
| ATN94126.1 | MG049919_p48 | hypothetical protein | phrog_9709 | unknown function | unknown function | -1 | 36738 | 37082 |
| ATN94135.1 | MG049919_p57 | hypothetical protein | phrog_7116 | unknown function | unknown function | -1 | 40688 | 41194 |
| ATN94144.1 | MG049919_p66 | hypothetical protein | phrog_11083 | unknown function | unknown function | -1 | 43928 | 44503 |
| ATN94106.1 | MG049919_p28 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | -1 | 24704 | 25021 |
| ATN94125.1 | MG049919_p47 | hypothetical protein | phrog_303 | unknown function | unknown function | -1 | 36508 | 36738 |
| ATN94081.1 | MG049919_p3 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | -1 | 1035 | 1436 |
| ATN94084.1 | MG049919_p6 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 2498 | 3649 |
| ATN94149.1 | MG049919_p71 | hypothetical protein | phrog_35282 | unknown function | unknown function | 1 | 46810 | 46983 |
| ATN94119.1 | MG049919_p41 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 33368 | 34936 |
| ATN94095.1 | MG049919_p17 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 11870 | 12517 |
| ATN94148.1 | MG049919_p70 | hypothetical protein | phrog_20265 | unknown function | unknown function | 1 | 46433 | 46813 |
| ATN94107.1 | MG049919_p29 | major tail protein | phrog_584 | major tail protein | tail | -1 | 25136 | 25804 |
| ATN94123.1 | MG049919_p45 | hypothetical protein | phrog_6666 | unknown function | unknown function | -1 | 35979 | 36140 |
| ATN94098.1 | MG049919_p20 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 14417 | 15373 |
| ATN94122.1 | MG049919_p44 | hypothetical protein | phrog_2919 | unknown function | unknown function | -1 | 35813 | 35998 |
| ATN94127.1 | MG049919_p49 | hypothetical protein | phrog_10456 | unknown function | unknown function | -1 | 37079 | 37288 |
| ATN94140.1 | MG049919_p62 | hypothetical protein | phrog_11449 | unknown function | unknown function | -1 | 42538 | 42768 |
| ATN94108.1 | MG049919_p30 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 25807 | 26205 |
| ATN94100.1 | MG049919_p22 | tail assembly protein | phrog_32 | tail assembly protein | tail | -1 | 18929 | 19528 |
| ATN94154.1 | MG049919_p76 | hypothetical protein | phrog_9085 | unknown function | unknown function | 1 | 48402 | 48614 |
| ATN94131.1 | MG049919_p53 | hypothetical protein | phrog_11330 | unknown function | unknown function | -1 | 39163 | 39381 |
| ATN94124.1 | MG049919_p46 | hypothetical protein | phrog_4927 | unknown function | unknown function | -1 | 36305 | 36508 |
| ATN94143.1 | MG049919_p65 | hypothetical protein | phrog_18675 | unknown function | unknown function | -1 | 43586 | 43915 |
| ATN94150.1 | MG049919_p72 | hypothetical protein | phrog_11577 | unknown function | unknown function | 1 | 47055 | 47426 |
| ATN94146.1 | MG049919_p68 | hypothetical protein | phrog_7717 | unknown function | unknown function | 1 | 45971 | 46156 |
| ATN94152.1 | MG049919_p74 | hypothetical protein | phrog_10555 | unknown function | unknown function | 1 | 47637 | 47957 |
| ATN94147.1 | MG049919_p69 | hypothetical protein | phrog_3623 | unknown function | unknown function | 1 | 46172 | 46357 |
| ATN94134.1 | MG049919_p56 | hypothetical protein | phrog_5579 | unknown function | unknown function | -1 | 40539 | 40688 |
| ATN94132.1 | MG049919_p54 | hypothetical protein | phrog_10580 | unknown function | unknown function | -1 | 39530 | 40168 |
| ATN94120.1 | MG049919_p42 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | -1 | 34975 | 35499 |
| ATN94142.1 | MG049919_p64 | hypothetical protein | phrog_7421 | unknown function | unknown function | -1 | 43320 | 43514 |
| ATN94093.1 | MG049919_p15 | tail fiber | phrog_1980 | tail fiber protein | tail | 1 | 9598 | 11382 |
| ATN94091.1 | MG049919_p13 | hypothetical protein | phrog_2856 | transcriptional regulator | transcription regulation | 1 | 8048 | 8500 |
| ATN94117.1 | MG049919_p39 | minor capsid protein | phrog_324 | head morphogenesis | head and packaging | -1 | 31277 | 32038 |
| ATN94097.1 | MG049919_p19 | lipoprotein | phrog_4281 | unknown function | unknown function | 1 | 14184 | 14414 |
| ATN94099.1 | MG049919_p21 | tail fiber protein | phrog_31 | central tail fiber J | tail | -1 | 15468 | 18851 |
| ATN94109.1 | MG049919_p31 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 26195 | 26638 |
| ATN94118.1 | MG049919_p40 | hypothetical protein | phrog_146 | portal protein | head and packaging | -1 | 32028 | 33311 |
| ATN94083.1 | MG049919_p5 | holin | phrog_2877 | holin | lysis | -1 | 1924 | 2139 |
| ATN94104.1 | MG049919_p26 | tail length tape measure protein | phrog_24 | tail length tape measure protein | tail | -1 | 21474 | 24347 |
| ATN94112.1 | MG049919_p34 | hypothetical protein | phrog_2716 | unknown function | unknown function | -1 | 27455 | 27745 |
| ATN94130.1 | MG049919_p52 | hypothetical protein | phrog_10642 | unknown function | unknown function | -1 | 38659 | 39105 |
| ATN94138.1 | MG049919_p60 | hypothetical protein | phrog_8628 | unknown function | unknown function | -1 | 42027 | 42200 |
| ATN94079.1 | MG049919_p1 | hypothetical protein | phrog_2794 | unknown function | unknown function | 1 | 209 | 616 |
| ATN94088.1 | MG049919_p10 | DNA adenine methyltransferase | phrog_111 | DNA methyltransferase | other | -1 | 4742 | 5455 |
| ATN94133.1 | MG049919_p55 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | -1 | 40173 | 40460 |
| ATN94085.1 | MG049919_p7 | hypothetical protein | phrog_4596 | unknown function | unknown function | -1 | 3728 | 4015 |
| ATN94116.1 | MG049919_p38 | major head subunit precursor | phrog_530 | head maturation protease | head and packaging | -1 | 30162 | 31274 |
| ATN94136.1 | MG049919_p58 | hypothetical protein | phrog_9595 | unknown function | unknown function | -1 | 41266 | 41754 |
| ATN94155.1 | MG049919_p77 | hypothetical protein | phrog_2684 | unknown function | unknown function | 1 | 48695 | 49057 |
| ATN94145.1 | MG049919_p67 | DNA methylase | phrog_757 | DNA methyltransferase | other | 1 | 45206 | 45910 |
| ATN94096.1 | MG049919_p18 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 12592 | 13656 |
| ATN94087.1 | MG049919_p9 | hypothetical protein | phrog_2676 | unknown function | unknown function | -1 | 4486 | 4734 |
| ATN94114.1 | MG049919_p36 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 28847 | 29614 |
| ATN94090.1 | MG049919_p12 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 5936 | 7948 |
| ATN94121.1 | MG049919_p43 | hypothetical protein | phrog_5976 | unknown function | unknown function | -1 | 35584 | 35811 |
| ATN94139.1 | MG049919_p61 | hypothetical protein | phrog_6080 | unknown function | unknown function | -1 | 42304 | 42531 |
| ATN94102.1 | MG049919_p24 | minor tail protein | phrog_18 | minor tail protein | tail | -1 | 20256 | 21038 |
| ATN94141.1 | MG049919_p63 | hypothetical protein | phrog_12951 | unknown function | unknown function | -1 | 42847 | 43317 |
| ATN94151.1 | MG049919_p73 | hypothetical protein | phrog_6503 | unknown function | unknown function | 1 | 47419 | 47619 |
| ATN94080.1 | MG049919_p2 | hypothetical protein | phrog_27210 | unknown function | unknown function | 1 | 806 | 1021 |
| ATN94082.1 | MG049919_p4 | endolysin | phrog_7 | endolysin | lysis | -1 | 1436 | 1924 |
| ATN94110.1 | MG049919_p32 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 26631 | 27002 |
| ATN94105.1 | MG049919_p27 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | -1 | 24387 | 24656 |
| ATN94156.1 | MG049919_p78 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 49188 | 50009 |
| ATN94092.1 | MG049919_p14 | DNA primase/helicase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 8577 | 9497 |
| ATN94137.1 | MG049919_p59 | hypothetical protein | phrog_11551 | unknown function | unknown function | -1 | 41826 | 42017 |
| ATN94129.1 | MG049919_p51 | morphogenetic protein | phrog_415 | polynucleotide kinase | other | -1 | 38042 | 38575 |
| ATN94101.1 | MG049919_p23 | minor tail protein | phrog_30 | minor tail protein | tail | -1 | 19525 | 20259 |
| ATN94153.1 | MG049919_p75 | hypothetical protein | phrog_4344 | unknown function | unknown function | 1 | 48174 | 48398 |
| ATN94111.1 | MG049919_p33 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | -1 | 26999 | 27412 |
| ATN94115.1 | MG049919_p37 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 29674 | 30150 |