| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG099934 |
Definition |
Mycobacterium phage AgentM, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
50503 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
85 |
%GC |
60.88 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATW61267.1 | MG099934_p78 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 46257 | 46397 |
| ATW61238.1 | MG099934_p49 | hypothetical protein | phrog_5242 | unknown function | unknown function | -1 | 36921 | 37187 |
| ATW61245.1 | MG099934_p56 | hypothetical protein | phrog_4670 | unknown function | unknown function | -1 | 39045 | 39179 |
| ATW61265.1 | MG099934_p76 | hypothetical protein | phrog_6186 | unknown function | unknown function | -1 | 45512 | 46138 |
| ATW61262.1 | MG099934_p73 | hypothetical protein | phrog_5561 | unknown function | unknown function | -1 | 44775 | 44954 |
| ATW61201.1 | MG099934_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 10877 | 11809 |
| ATW61258.1 | MG099934_p69 | membrane protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 43817 | 44113 |
| ATW61243.1 | MG099934_p54 | hypothetical protein | phrog_6549 | unknown function | unknown function | -1 | 38606 | 38824 |
| ATW61240.1 | MG099934_p51 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37471 | 38130 |
| ATW61271.1 | MG099934_p82 | hypothetical protein | phrog_6093 | unknown function | unknown function | -1 | 48204 | 48350 |
| ATW61263.1 | MG099934_p74 | hypothetical protein | phrog_5476 | unknown function | unknown function | -1 | 44957 | 45298 |
| ATW61275.1 | MG099934_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 504 | 803 |
| ATW61246.1 | MG099934_p57 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39199 | 39657 |
| ATW61228.1 | MG099934_p39 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30757 | 31476 |
| ATW61248.1 | MG099934_p59 | hypothetical protein | phrog_4539 | unknown function | unknown function | -1 | 39803 | 39901 |
| ATW61221.1 | MG099934_p32 | hypothetical protein | phrog_6992 | unknown function | unknown function | -1 | 27048 | 27221 |
| ATW61259.1 | MG099934_p70 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 44114 | 44359 |
| ATW61268.1 | MG099934_p79 | ArdA-like antirestriction protein | phrog_2059 | anti-restriction protein | moron, auxiliary metabolic gene and host takeover | -1 | 46414 | 46929 |
| ATW61241.1 | MG099934_p52 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37940 | 38350 |
| ATW61219.1 | MG099934_p30 | membrane protein | phrog_733 | excisionase | integration and excision | 1 | 26023 | 26442 |
| ATW61234.1 | MG099934_p45 | helix-turn-helix DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 34651 | 35277 |
| ATW61222.1 | MG099934_p33 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 27230 | 27388 |
| ATW61212.1 | MG099934_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19734 | 21533 |
| ATW61232.1 | MG099934_p43 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 34327 | 34563 |
| ATW61198.1 | MG099934_p9 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8017 | 9450 |
| ATW61197.1 | MG099934_p8 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6239 | 8017 |
| ATW61249.1 | MG099934_p60 | hypothetical protein | phrog_6893 | unknown function | unknown function | -1 | 39894 | 39977 |
| ATW61273.1 | MG099934_p84 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 48822 | 48983 |
| ATW61237.1 | MG099934_p48 | hypothetical protein | phrog_4195 | unknown function | unknown function | -1 | 36505 | 36924 |
| ATW61255.1 | MG099934_p66 | exonuclease/helicase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 41902 | 42717 |
| ATW61196.1 | MG099934_p7 | lysin B | phrog_102 | endolysin | lysis | 1 | 5433 | 6242 |
| ATW61207.1 | MG099934_p18 | major tail protein | phrog_117 | major tail protein | tail | 1 | 13583 | 14410 |
| ATW61252.1 | MG099934_p63 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40521 | 41327 |
| ATW61229.1 | MG099934_p40 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 31532 | 32065 |
| ATW61215.1 | MG099934_p26 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 22303 | 22623 |
| ATW61217.1 | MG099934_p28 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 24027 | 24311 |
| ATW61203.1 | MG099934_p14 | head-to-tail connector protein | phrog_2348 | unknown function | unknown function | 1 | 12249 | 12389 |
| ATW61236.1 | MG099934_p47 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 36041 | 36508 |
| ATW61195.1 | MG099934_p6 | lysin A | phrog_1512 | endolysin | lysis | 1 | 4522 | 5436 |
| ATW61231.1 | MG099934_p42 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34157 | 34327 |
| ATW61192.1 | MG099934_p3 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 1396 | 2358 |
| ATW61224.1 | MG099934_p35 | hypothetical protein | phrog_5282 | unknown function | unknown function | -1 | 27928 | 28212 |
| ATW61191.1 | MG099934_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 841 | 1290 |
| ATW61208.1 | MG099934_p20 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14521 | 14901 |
| ATW61270.1 | MG099934_p81 | hypothetical protein | phrog_3906 | unknown function | unknown function | -1 | 47279 | 48112 |
| ATW61199.1 | MG099934_p10 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9447 | 10286 |
| ATW61211.1 | MG099934_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18724 | 19737 |
| ATW61239.1 | MG099934_p50 | hypothetical protein | phrog_5270 | unknown function | unknown function | -1 | 37184 | 37474 |
| ATW61254.1 | MG099934_p65 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 41596 | 41898 |
| ATW61269.1 | MG099934_p80 | hypothetical protein | phrog_5927 | unknown function | unknown function | -1 | 46947 | 47162 |
| ATW61257.1 | MG099934_p68 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 43021 | 43551 |
| ATW61210.1 | MG099934_p21 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 15319 | 18660 |
| ATW61220.1 | MG099934_p31 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 26542 | 27051 |
| ATW61205.1 | MG099934_p16 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 12748 | 13161 |
| ATW61214.1 | MG099934_p25 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 22004 | 22306 |
| ATW61260.1 | MG099934_p71 | hypothetical protein | phrog_5066 | unknown function | unknown function | -1 | 44356 | 44610 |
| ATW61266.1 | MG099934_p77 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46135 | 46275 |
| ATW61253.1 | MG099934_p64 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41370 | 41621 |
| ATW61227.1 | MG099934_p38 | helix-turn-helix DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30501 | 30764 |
| ATW61274.1 | MG099934_p85 | hypothetical protein | phrog_8568 | unknown function | unknown function | -1 | 49778 | 50011 |
| ATW61226.1 | MG099934_p37 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 30118 | 30504 |
| ATW61261.1 | MG099934_p72 | hypothetical protein | phrog_6322 | unknown function | unknown function | -1 | 44610 | 44762 |
| ATW61250.1 | MG099934_p61 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 39974 | 40126 |
| ATW61247.1 | MG099934_p58 | hypothetical protein | phrog_13032 | unknown function | unknown function | -1 | 39658 | 39813 |
| ATW61251.1 | MG099934_p62 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40123 | 40512 |
| ATW61213.1 | MG099934_p24 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 21547 | 22011 |
| ATW61223.1 | MG099934_p34 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27477 | 27938 |
| ATW61264.1 | MG099934_p75 | hypothetical protein | phrog_6649 | unknown function | unknown function | -1 | 45295 | 45501 |
| ATW61204.1 | MG099934_p15 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 12386 | 12748 |
| ATW61216.1 | MG099934_p27 | minor tail protein | phrog_2683 | minor tail protein | tail | 1 | 22620 | 24017 |
| ATW61256.1 | MG099934_p67 | hypothetical protein | phrog_5957 | unknown function | unknown function | -1 | 42714 | 43004 |
| ATW61218.1 | MG099934_p29 | integrase | phrog_95 | integrase | integration and excision | -1 | 24363 | 25856 |
| ATW61233.1 | MG099934_p44 | hypothetical protein | phrog_5897 | unknown function | unknown function | -1 | 34556 | 34651 |
| ATW61206.1 | MG099934_p17 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 13161 | 13568 |
| ATW61209.1 | MG099934_p19 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 14521 | 15314 |
| ATW61230.1 | MG099934_p41 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32091 | 34160 |
| ATW61235.1 | MG099934_p46 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35274 | 36044 |
| ATW61193.1 | MG099934_p4 | minor tail protein | phrog_1197 | tail protein | tail | 1 | 2343 | 3680 |
| ATW61200.1 | MG099934_p11 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10341 | 10850 |
| ATW61194.1 | MG099934_p5 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 3698 | 4345 |
| ATW61272.1 | MG099934_p83 | hypothetical protein | phrog_6340 | unknown function | unknown function | -1 | 48353 | 48766 |
| ATW61244.1 | MG099934_p55 | hypothetical protein | phrog_10096 | unknown function | unknown function | -1 | 38824 | 39048 |
| ATW61225.1 | MG099934_p36 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28245 | 30104 |
| ATW61202.1 | MG099934_p13 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 11878 | 12252 |
| ATW61242.1 | MG099934_p53 | hypothetical protein | phrog_5993 | unknown function | unknown function | -1 | 38352 | 38609 |