Genomic map of Mycobacterium phage Koko (MG099945)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG099945
Definition
Mycobacterium phage Koko, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
NUCCORE
Length
52879
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
61.34
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATW60310.1 MG099945_p17 head-to-tail connector protein phrog_748 head-tail connector protein connector 1 13278 13475
ATW60389.1 MG099945_p96 hypothetical protein phrog_2124 unknown function unknown function -1 49821 49949
ATW60330.1 MG099945_p37 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 26579 26968
ATW60390.1 MG099945_p97 hypothetical protein phrog_6665 unknown function unknown function -1 49949 50062
ATW60344.1 MG099945_p51 HNH endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism -1 32913 33284
ATW60324.1 MG099945_p31 minor tail protein phrog_2683 minor tail protein tail 1 22844 24265
ATW60333.1 MG099945_p40 hypothetical protein phrog_1545 unknown function unknown function -1 27648 27803
ATW60345.1 MG099945_p52 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 33284 35338
ATW60347.1 MG099945_p54 hypothetical protein phrog_5870 unknown function unknown function -1 35514 35654
ATW60336.1 MG099945_p43 hypothetical protein phrog_896 unknown function unknown function -1 28302 28505
ATW60311.1 MG099945_p18 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 13478 13855
ATW60343.1 MG099945_p50 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 32351 32908
ATW60327.1 MG099945_p34 dsDNA partitioning protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 25413 25991
ATW60340.1 MG099945_p47 helix-turn-helix DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30851 31279
ATW60312.1 MG099945_p19 head-to-tail connector protein phrog_830 head-tail connector protein connector 1 13852 14043
ATW60323.1 MG099945_p30 minor tail protein phrog_404 minor tail protein tail 1 22551 22847
ATW60303.1 MG099945_p10 lysin A phrog_317 endolysin lysis 1 5854 7065
ATW60298.1 MG099945_p5 terminase small subunit phrog_226 minor tail protein tail 1 2482 2952
ATW60384.1 MG099945_p91 hypothetical protein phrog_586 unknown function unknown function -1 48794 49174
ATW60337.1 MG099945_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28530 30329
ATW60329.1 MG099945_p36 hypothetical protein phrog_5261 unknown function unknown function 1 26361 26492
ATW60295.1 MG099945_p2 peptidase phrog_4415 peptidase other 1 1089 1925
ATW60354.1 MG099945_p61 endonuclease VII phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism -1 38476 38904
ATW60359.1 MG099945_p66 hypothetical protein phrog_397 unknown function unknown function -1 39804 40037
ATW60321.1 MG099945_p28 minor tail protein phrog_110 minor tail protein tail 1 20314 22086
ATW60335.1 MG099945_p42 hypothetical protein phrog_5282 unknown function unknown function -1 28051 28305
ATW60294.1 MG099945_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 418 1176
ATW60380.1 MG099945_p87 membrane protein phrog_828 unknown function unknown function -1 47180 47422
ATW60322.1 MG099945_p29 minor tail protein phrog_352 minor tail protein tail 1 22102 22554
ATW60306.1 MG099945_p13 portal protein phrog_104 portal protein head and packaging 1 9284 10750
ATW60346.1 MG099945_p53 hypothetical protein phrog_499 unknown function unknown function -1 35335 35517
ATW60393.1 MG099945_p100 hypothetical protein phrog_2499 unknown function unknown function -1 50983 51171
ATW60382.1 MG099945_p89 DNA methylase phrog_363 DNA methyltransferase other -1 47891 48418
ATW60364.1 MG099945_p71 hypothetical protein phrog_520 unknown function unknown function -1 41980 42237
ATW60325.1 MG099945_p32 hypothetical protein phrog_2235 minor tail protein tail 1 24275 24559
ATW60320.1 MG099945_p27 minor tail protein phrog_106 minor tail protein tail 1 19301 20317
ATW60358.1 MG099945_p65 hypothetical protein phrog_3369 unknown function unknown function -1 39658 39807
ATW60314.1 MG099945_p21 head-to-tail connector protein phrog_321 tail completion or Neck1 protein connector 1 14411 14764
ATW60355.1 MG099945_p62 hypothetical protein phrog_4886 unknown function unknown function -1 38904 39056
ATW60299.1 MG099945_p6 minor tail protein phrog_1260 minor tail protein tail 1 3037 3999
ATW60391.1 MG099945_p98 hypothetical protein phrog_3831 unknown function unknown function -1 50064 50273
ATW60376.1 MG099945_p83 membrane protein phrog_9760 membrane protein moron, auxiliary metabolic gene and host takeover -1 46328 46417
ATW60328.1 MG099945_p35 dsDNA partitioning protein phrog_2639 Arc-like repressor transcription regulation 1 25984 26259
ATW60315.1 MG099945_p22 head-to-tail connector protein phrog_123 tail terminator connector 1 14761 15177
ATW60394.1 MG099945_p101 hypothetical protein phrog_1445 unknown function unknown function -1 51201 51281
ATW60383.1 MG099945_p90 hypothetical protein phrog_3256 unknown function unknown function -1 48415 48768
ATW60351.1 MG099945_p58 hypothetical protein phrog_2264 unknown function unknown function -1 37530 37631
ATW60356.1 MG099945_p63 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39049 39549
ATW60369.1 MG099945_p76 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44215 44730
ATW60386.1 MG099945_p93 hypothetical protein phrog_2001 unknown function unknown function -1 49365 49457
ATW60338.1 MG099945_p45 hypothetical protein phrog_3812 unknown function unknown function -1 30337 30516
ATW60317.1 MG099945_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15936 16340
ATW60392.1 MG099945_p99 hypothetical protein phrog_1392 unknown function unknown function -1 50270 50980
ATW60318.1 MG099945_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15936 16756
ATW60371.1 MG099945_p78 hypothetical protein phrog_3236 unknown function unknown function -1 45124 45465
ATW60341.1 MG099945_p48 hypothetical protein phrog_690 unknown function unknown function -1 31279 31485
ATW60348.1 MG099945_p55 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35651 36319
ATW60372.1 MG099945_p79 hypothetical protein phrog_5531 unknown function unknown function -1 45465 45674
ATW60379.1 MG099945_p86 hypothetical protein phrog_865 HNH endonuclease DNA, RNA and nucleotide metabolism -1 47019 47177
ATW60350.1 MG099945_p57 hypothetical protein phrog_1167 phosphofructokinase other -1 37090 37533
ATW60395.1 MG099945_p102 hypothetical protein phrog_1676 unknown function unknown function -1 51314 51643
ATW60375.1 MG099945_p82 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46068 46331
ATW60342.1 MG099945_p49 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 31487 32224
ATW60381.1 MG099945_p88 DNA methylase phrog_1008 DNA methyltransferase other -1 47419 47970
ATW60297.1 MG099945_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2143 2439
ATW60308.1 MG099945_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11681 12202
ATW60331.1 MG099945_p38 hypothetical protein phrog_383 unknown function unknown function -1 26961 27359
ATW60366.1 MG099945_p73 membrane protein phrog_6023 unknown function unknown function -1 42539 42913
ATW60378.1 MG099945_p85 hypothetical protein phrog_855 unknown function unknown function -1 46879 47022
ATW60374.1 MG099945_p81 hypothetical protein phrog_1477 unknown function unknown function -1 45949 46071
ATW60296.1 MG099945_p3 hypothetical protein phrog_4347 unknown function unknown function 1 1925 2146
ATW60300.1 MG099945_p7 minor tail protein phrog_819 tail protein tail 1 3999 4664
ATW60352.1 MG099945_p59 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37631 38263
ATW60357.1 MG099945_p64 membrane protein phrog_2187 unknown function unknown function -1 39521 39661
ATW60360.1 MG099945_p67 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40157 40543
ATW60334.1 MG099945_p41 hypothetical protein phrog_4371 unknown function unknown function -1 27800 28054
ATW60387.1 MG099945_p94 hypothetical protein phrog_1946 unknown function unknown function -1 49454 49657
ATW60388.1 MG099945_p95 hypothetical protein phrog_519 unknown function unknown function -1 49657 49824
ATW60332.1 MG099945_p39 hypothetical protein phrog_2099 unknown function unknown function -1 27356 27655
ATW60313.1 MG099945_p20 head-to-tail connector protein phrog_320 head closure Hc1 connector 1 14043 14411
ATW60361.1 MG099945_p68 hypothetical protein phrog_762 unknown function unknown function -1 40540 40896
ATW60377.1 MG099945_p84 protease phrog_1006 unknown function unknown function -1 46414 46875
ATW60307.1 MG099945_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10747 11631
ATW60365.1 MG099945_p72 hypothetical protein phrog_642 unknown function unknown function -1 42234 42533
ATW60367.1 MG099945_p74 exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42962 43783
ATW60304.1 MG099945_p11 holin phrog_526 holin lysis 1 7065 7496
ATW60319.1 MG099945_p26 tape measure protein phrog_305 tail length tape measure protein tail 1 16749 19274
ATW60368.1 MG099945_p75 hypothetical protein phrog_1562 unknown function unknown function -1 43780 44166
ATW60385.1 MG099945_p92 hypothetical protein phrog_5098 unknown function unknown function -1 49171 49368
ATW60339.1 MG099945_p46 hypothetical protein phrog_2094 unknown function unknown function -1 30513 30851
ATW60305.1 MG099945_p12 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7533 9287
ATW60370.1 MG099945_p77 hypothetical protein phrog_1173 unknown function unknown function -1 44966 45118
ATW60363.1 MG099945_p70 dsDNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41123 41929
ATW60301.1 MG099945_p8 minor tail protein phrog_356 minor tail protein tail 1 4661 5359
ATW60316.1 MG099945_p23 major tail protein phrog_117 major tail protein tail 1 15231 15824
ATW60353.1 MG099945_p60 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38091 38483
ATW60373.1 MG099945_p80 nucleotide pyrophosphohydrolase phrog_3963 unknown function unknown function -1 45671 45940
ATW60326.1 MG099945_p33 hypothetical protein phrog_2570 unknown function unknown function 1 24619 24813
ATW60362.1 MG099945_p69 membrane protein phrog_1374 unknown function unknown function -1 40911 41090
ATW60349.1 MG099945_p56 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 36323 37093
ATW60309.1 MG099945_p16 major capsid protein phrog_10 major head protein head and packaging 1 12235 13206
ATW60302.1 MG099945_p9 hypothetical protein phrog_1087 unknown function unknown function 1 5696 5854