functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
MG099953 |
Definition |
Mycobacterium phage Youngblood, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
NUCCORE |
Length |
75896 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
148 |
%GC |
62.94 |
Number of singletons |
1 |
Number of paralogs |
5 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
ATW59641.1 | MG099953_p93 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 55297 | 55419 |
ATW59635.1 | MG099953_p87 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52624 | 52845 |
ATW59581.1 | MG099953_p33 | holin | phrog_526 | holin | lysis | 1 | 31307 | 31690 |
ATW59661.1 | MG099953_p113 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64179 | 64553 |
ATW59610.1 | MG099953_p62 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42513 | 42791 |
ATW59578.1 | MG099953_p30 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29125 | 29310 |
ATW59557.1 | MG099953_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4570 | 4791 |
ATW59591.1 | MG099953_p43 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35174 | 35542 |
ATW59614.1 | MG099953_p66 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43774 | 44073 |
ATW59554.1 | MG099953_p6 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1309 | 1548 |
ATW59655.1 | MG099953_p107 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62281 | 62571 |
ATW59695.1 | MG099953_p147 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75131 | 75325 |
ATW59621.1 | MG099953_p73 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 47094 | 47405 |
ATW59631.1 | MG099953_p83 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50617 | 50952 |
ATW59583.1 | MG099953_p35 | lysin B | phrog_102 | endolysin | lysis | 1 | 32018 | 32875 |
ATW59626.1 | MG099953_p78 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48790 | 49023 |
ATW59630.1 | MG099953_p82 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49970 | 50620 |
ATW59654.1 | MG099953_p106 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 61925 | 62284 |
ATW59694.1 | MG099953_p146 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74682 | 75029 |
ATW59605.1 | MG099953_p57 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40637 | 40984 |
ATW59658.1 | MG099953_p110 | hypothetical protein | phrog_15491 | unknown function | unknown function | 1 | 63203 | 63319 |
ATW59680.1 | MG099953_p132 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70265 | 70525 |
ATW59589.1 | MG099953_p41 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34555 | 34902 |
ATW59628.1 | MG099953_p80 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49430 | 49747 |
ATW59565.1 | MG099953_p17 | head-to-tail connector protein | phrog_813 | head-tail adaptor | connector | 1 | 10582 | 10986 |
ATW59684.1 | MG099953_p136 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 71694 | 72218 |
ATW59608.1 | MG099953_p60 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 41523 | 42368 |
ATW59617.1 | MG099953_p69 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44685 | 45014 |
ATW59598.1 | MG099953_p50 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36917 | 37132 |
ATW59568.1 | MG099953_p21 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12641 | 13102 |
ATW59650.1 | MG099953_p102 | DNA methylase | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 59838 | 60401 |
ATW59629.1 | MG099953_p81 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49737 | 49973 |
ATW59573.1 | MG099953_p25 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21614 | 22435 |
ATW59604.1 | MG099953_p56 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39769 | 40542 |
ATW59667.1 | MG099953_p119 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67161 | 67334 |
ATW59682.1 | MG099953_p134 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70887 | 71345 |
ATW59637.1 | MG099953_p89 | holliday-junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53200 | 53562 |
ATW59644.1 | MG099953_p96 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57596 | 57856 |
ATW59663.1 | MG099953_p115 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 65046 | 65831 |
ATW59572.1 | MG099953_p24 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19998 | 21593 |
ATW59662.1 | MG099953_p114 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 64556 | 65035 |
ATW59590.1 | MG099953_p42 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 34923 | 35177 |
ATW59659.1 | MG099953_p111 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 63684 | 63908 |
ATW59562.1 | MG099953_p14 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 9311 | 9877 |
ATW59549.1 | MG099953_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |
ATW59600.1 | MG099953_p52 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37297 | 37692 |
ATW59651.1 | MG099953_p103 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60394 | 60834 |
ATW59648.1 | MG099953_p100 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58929 | 59264 |
ATW59687.1 | MG099953_p139 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72611 | 73147 |
ATW59574.1 | MG099953_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22452 | 24848 |
ATW59671.1 | MG099953_p123 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68181 | 68348 |
ATW59552.1 | MG099953_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 783 |
ATW59579.1 | MG099953_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29443 | 29727 |
ATW59580.1 | MG099953_p32 | lysin A | phrog_317 | endolysin | lysis | 1 | 29801 | 31303 |
ATW59570.1 | MG099953_p22 | tape measure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13505 | 18235 |
ATW59676.1 | MG099953_p128 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68984 | 69118 |
ATW59673.1 | MG099953_p125 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68529 | 68666 |
ATW59594.1 | MG099953_p46 | hypothetical protein | phrog_6127 | unknown function | unknown function | -1 | 36241 | 36354 |
ATW59672.1 | MG099953_p124 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68332 | 68532 |
ATW59674.1 | MG099953_p126 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68663 | 68842 |
ATW59627.1 | MG099953_p79 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 49020 | 49433 |
ATW59592.1 | MG099953_p44 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 35539 | 35976 |
ATW59686.1 | MG099953_p138 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72359 | 72595 |
ATW59571.1 | MG099953_p23 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18265 | 19926 |
ATW59597.1 | MG099953_p49 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36688 | 36858 |
ATW59649.1 | MG099953_p101 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59297 | 59797 |
ATW59599.1 | MG099953_p51 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 37151 | 37297 |
ATW59678.1 | MG099953_p130 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69497 | 69760 |
ATW59576.1 | MG099953_p28 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 27686 | 28630 |
ATW59566.1 | MG099953_p18 | major tail protein | phrog_476 | major tail protein | tail | 1 | 11013 | 11987 |
ATW59677.1 | MG099953_p129 | hypothetical protein | phrog_6448 | unknown function | unknown function | 1 | 69120 | 69233 |
ATW59575.1 | MG099953_p27 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24845 | 27685 |
ATW59643.1 | MG099953_p95 | helix-turn-helix DNA binding protein | phrog_1590 | unknown function | unknown function | 1 | 56778 | 57599 |
ATW59685.1 | MG099953_p137 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 72244 | 72369 |
ATW59692.1 | MG099953_p144 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 74166 | 74429 |
ATW59561.1 | MG099953_p13 | head-to-tail connector protein | phrog_2796 | head-tail connector protein | connector | 1 | 9132 | 9311 |
ATW59606.1 | MG099953_p58 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41294 | 41392 |
ATW59690.1 | MG099953_p142 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73709 | 73945 |
ATW59675.1 | MG099953_p127 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68842 | 68973 |
ATW59633.1 | MG099953_p85 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52204 | 52392 |
ATW59613.1 | MG099953_p65 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43659 | 43766 |
ATW59660.1 | MG099953_p112 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 63905 | 64168 |
ATW59551.1 | MG099953_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
ATW59588.1 | MG099953_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34394 | 34558 |
ATW59669.1 | MG099953_p121 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67520 | 67774 |
ATW59642.1 | MG099953_p94 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55416 | 56741 |
ATW59693.1 | MG099953_p145 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 74426 | 74638 |
ATW59683.1 | MG099953_p135 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71360 | 71689 |
ATW59550.1 | MG099953_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
ATW59652.1 | MG099953_p104 | protease | phrog_94 | head maturation protease | head and packaging | 1 | 60923 | 61729 |
ATW59622.1 | MG099953_p74 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 47405 | 47875 |
ATW59585.1 | MG099953_p37 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33295 | 33540 |
ATW59689.1 | MG099953_p141 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73539 | 73697 |
ATW59639.1 | MG099953_p91 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 53908 | 54849 |
ATW59563.1 | MG099953_p15 | head-to-tail connector protein | phrog_1531 | head closure | connector | 1 | 9892 | 10227 |
ATW59595.1 | MG099953_p47 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 36351 | 36524 |
ATW59601.1 | MG099953_p53 | membrane domain protein | phrog_2847 | unknown function | unknown function | -1 | 37979 | 38281 |
ATW59558.1 | MG099953_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4778 | 6334 |
ATW59555.1 | MG099953_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1548 | 1856 |
ATW59656.1 | MG099953_p108 | helix-turn-helix DNA binding protein | phrog_1969 | unknown function | unknown function | 1 | 62576 | 62887 |
ATW59584.1 | MG099953_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32872 | 33288 |
ATW59603.1 | MG099953_p55 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39552 | 39791 |
ATW59679.1 | MG099953_p131 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69757 | 70146 |
ATW59691.1 | MG099953_p143 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 73951 | 74148 |
ATW59668.1 | MG099953_p120 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 67327 | 67539 |
ATW59618.1 | MG099953_p70 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45011 | 45979 |
ATW59587.1 | MG099953_p39 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 34256 | 34384 |
ATW59593.1 | MG099953_p45 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35973 | 36248 |
ATW59696.1 | MG099953_p148 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 75315 | 75662 |
ATW59688.1 | MG099953_p140 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73151 | 73534 |
ATW59623.1 | MG099953_p75 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47875 | 48243 |
ATW59569.1 | MG099953_p20 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 12641 | 13512 |
ATW59607.1 | MG099953_p59 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41389 | 41526 |
ATW59666.1 | MG099953_p118 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 67037 | 67174 |
ATW59616.1 | MG099953_p68 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 44356 | 44688 |
ATW59596.1 | MG099953_p48 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36524 | 36691 |
ATW59611.1 | MG099953_p63 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 43100 | 43288 |
ATW59681.1 | MG099953_p133 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70522 | 70890 |
ATW59664.1 | MG099953_p116 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65828 | 66070 |
ATW59624.1 | MG099953_p76 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48246 | 48614 |
ATW59657.1 | MG099953_p109 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62940 | 63230 |
ATW59609.1 | MG099953_p61 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42370 | 42516 |
ATW59619.1 | MG099953_p71 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45976 | 46386 |
ATW59638.1 | MG099953_p90 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53559 | 53753 |
ATW59586.1 | MG099953_p38 | DNA bridging protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33737 | 34123 |
ATW59634.1 | MG099953_p86 | WhiB family transcription factor | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 52374 | 52649 |
ATW59670.1 | MG099953_p122 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67723 | 68184 |
ATW59567.1 | MG099953_p19 | hypothetical protein | phrog_5711 | head fiber protein | head and packaging | 1 | 12047 | 12520 |
ATW59602.1 | MG099953_p54 | integrase | phrog_1 | integrase | integration and excision | 1 | 38532 | 39413 |
ATW59582.1 | MG099953_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31683 | 32021 |
ATW59556.1 | MG099953_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1895 | 4558 |
ATW59559.1 | MG099953_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6337 | 7428 |
ATW59612.1 | MG099953_p64 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43335 | 43640 |
ATW59665.1 | MG099953_p117 | DNA recombinase | phrog_97 | UvsX-like recombinase | other | 1 | 66078 | 67040 |
ATW59647.1 | MG099953_p99 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 58484 | 58927 |
ATW59564.1 | MG099953_p16 | head-to-tail connector protein | phrog_2805 | minor tail protein | tail | 1 | 10224 | 10604 |
ATW59560.1 | MG099953_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7516 | 9009 |
ATW59640.1 | MG099953_p92 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 54956 | 55324 |
ATW59553.1 | MG099953_p5 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 776 | 1237 |
ATW59632.1 | MG099953_p84 | dsDNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50945 | 52207 |
ATW59653.1 | MG099953_p105 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 61731 | 61928 |
ATW59645.1 | MG099953_p97 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57873 | 58031 |
ATW59615.1 | MG099953_p67 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 44039 | 44167 |
ATW59625.1 | MG099953_p77 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48614 | 48793 |
ATW59646.1 | MG099953_p98 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 58028 | 58480 |
ATW59577.1 | MG099953_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28710 | 29138 |
ATW59620.1 | MG099953_p72 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46379 | 47101 |
ATW59636.1 | MG099953_p88 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52838 | 53203 |