| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG189906 |
Definition |
Stenotrophomonas phage vB_SmaS_DLP_5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Delepquintavirus; Stenotrophomonas virus DLP5. |
DB of origin |
NUCCORE |
Length |
96542 |
Host Name |
Stenotrophomonas maltophilia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
149 |
%GC |
58.36 |
Number of singletons |
90 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATS92309.1 | MG189906_p74 | SPFH domain-containing protein | phrog_200 | lipoprotein | other | 1 | 52692 | 53489 |
| ATS92334.1 | MG189906_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26661 | 27149 |
| ATS92332.1 | MG189906_p64 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46571 | 47068 |
| ATS92388.1 | MG189906_p86 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59527 | 59781 |
| ATS92401.1 | MG189906_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33098 | 33286 |
| ATS92396.1 | MG189906_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58941 | 59162 |
| ATS92390.1 | MG189906_p111 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74696 | 74938 |
| ATS92286.1 | MG189906_p119 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76961 | 78133 |
| ATS92275.1 | MG189906_p1 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 78 | 1892 |
| ATS92300.1 | MG189906_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33347 | 34273 |
| ATS92402.1 | MG189906_p127 | hypothetical protein | phrog_11659 | unknown function | unknown function | 1 | 80981 | 81163 |
| ATS92347.1 | MG189906_p10 | tail protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 8127 | 8549 |
| ATS92351.1 | MG189906_p110 | DUF3310 containing protein | phrog_11324 | nucleotide kinase | other | 1 | 74224 | 74634 |
| ATS92375.1 | MG189906_p133 | hypothetical protein | singleton | unknown function | unknown function | 1 | 83356 | 83649 |
| ATS92412.1 | MG189906_p117 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76419 | 76571 |
| ATS92414.1 | MG189906_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50616 | 50741 |
| ATS92394.1 | MG189906_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53585 | 53812 |
| ATS92410.1 | MG189906_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29262 | 29426 |
| ATS92365.1 | MG189906_p77 | hypothetical protein | phrog_36680 | unknown function | unknown function | 1 | 54246 | 54596 |
| ATS92364.1 | MG189906_p120 | hypothetical protein | phrog_38499 | unknown function | unknown function | 1 | 78133 | 78483 |
| ATS92408.1 | MG189906_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28163 | 28333 |
| ATS92374.1 | MG189906_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30170 | 30472 |
| ATS92329.1 | MG189906_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37496 | 38056 |
| ATS92377.1 | MG189906_p22 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 20016 | 20303 |
| ATS92304.1 | MG189906_p63 | hypothetical protein | phrog_2506 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45690 | 46574 |
| ATS92288.1 | MG189906_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54589 | 55743 |
| ATS92352.1 | MG189906_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27708 | 28112 |
| ATS92313.1 | MG189906_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51339 | 52109 |
| ATS92340.1 | MG189906_p121 | hypothetical protein | phrog_26039 | unknown function | unknown function | 1 | 78509 | 78970 |
| ATS92418.1 | MG189906_p113 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75401 | 75499 |
| ATS92341.1 | MG189906_p43 | phosphoglycerate kinase | singleton | unknown function | unknown function | 1 | 32407 | 32859 |
| ATS92319.1 | MG189906_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61278 | 61922 |
| ATS92295.1 | MG189906_p19 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 16548 | 17525 |
| ATS92330.1 | MG189906_p31 | lysozyme | phrog_315 | endolysin | lysis | 1 | 27146 | 27706 |
| ATS92283.1 | MG189906_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4125 | 5351 |
| ATS92272.1 | MG189906_p146 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 92618 | 94903 |
| ATS92315.1 | MG189906_p8 | ribonuclease E | singleton | unknown function | unknown function | 1 | 6741 | 7493 |
| ATS92391.1 | MG189906_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32859 | 33101 |
| ATS92337.1 | MG189906_p128 | DUF1643 containing protein | phrog_3230 | unknown function | unknown function | 1 | 81163 | 81636 |
| ATS92398.1 | MG189906_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29958 | 30167 |
| ATS92314.1 | MG189906_p14 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 9746 | 10501 |
| ATS92358.1 | MG189906_p116 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76054 | 76428 |
| ATS92298.1 | MG189906_p99 | WcaG | phrog_540 | nucleotide-sugar epimerase | DNA, RNA and nucleotide metabolism | 1 | 64875 | 65816 |
| ATS92343.1 | MG189906_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53809 | 54249 |
| ATS92273.1 | MG189906_p136 | pyruvate phosphate dikinase | phrog_18609 | kinase | other | 1 | 85583 | 87520 |
| ATS92285.1 | MG189906_p61 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 44117 | 45319 |
| ATS92271.1 | MG189906_p24 | tail protein | phrog_1101 | tail protein | tail | 1 | 20499 | 22979 |
| ATS92404.1 | MG189906_p123 | hypothetical protein | singleton | unknown function | unknown function | 1 | 79163 | 79342 |
| ATS92292.1 | MG189906_p141 | hypothetical protein | phrog_20946 | unknown function | unknown function | 1 | 89194 | 90210 |
| ATS92369.1 | MG189906_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55743 | 56084 |
| ATS92356.1 | MG189906_p126 | hypothetical protein | singleton | unknown function | unknown function | 1 | 80599 | 80988 |
| ATS92409.1 | MG189906_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3883 | 4053 |
| ATS92289.1 | MG189906_p81 | UDP-glucose 4-epimerase | phrog_540 | nucleotide-sugar epimerase | DNA, RNA and nucleotide metabolism | 1 | 56363 | 57469 |
| ATS92316.1 | MG189906_p125 | hypothetical protein | phrog_6452 | unknown function | unknown function | 1 | 79868 | 80602 |
| ATS92399.1 | MG189906_p23 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 20300 | 20509 |
| ATS92297.1 | MG189906_p55 | primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 39905 | 40870 |
| ATS92353.1 | MG189906_p59 | transcriptional regulator | phrog_19880 | transcriptional regulator | transcription regulation | 1 | 43342 | 43743 |
| ATS92323.1 | MG189906_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31794 | 32414 |
| ATS92270.1 | MG189906_p17 | tape measure protein | phrog_1107 | tail length tape measure protein | tail | 1 | 11203 | 14958 |
| ATS92355.1 | MG189906_p112 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74940 | 75332 |
| ATS92303.1 | MG189906_p109 | hypothetical protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 73334 | 74227 |
| ATS92389.1 | MG189906_p118 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76654 | 76905 |
| ATS92392.1 | MG189906_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62204 | 62443 |
| ATS92415.1 | MG189906_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11075 | 11197 |
| ATS92382.1 | MG189906_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60974 | 61249 |
| ATS92387.1 | MG189906_p115 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75810 | 76064 |
| ATS92306.1 | MG189906_p143 | hypothetical protein | singleton | unknown function | unknown function | 1 | 91099 | 91932 |
| ATS92331.1 | MG189906_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39403 | 39912 |
| ATS92291.1 | MG189906_p100 | WecE | phrog_3139 | aminotransferase | other | 1 | 65816 | 66862 |
| ATS92379.1 | MG189906_p148 | hypothetical protein | singleton | unknown function | unknown function | 1 | 95447 | 95728 |
| ATS92301.1 | MG189906_p49 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 36063 | 36983 |
| ATS92407.1 | MG189906_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37323 | 37496 |
| ATS92328.1 | MG189906_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52106 | 52672 |
| ATS92311.1 | MG189906_p142 | thymidylate synthase | phrog_17568 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 90207 | 90995 |
| ATS92321.1 | MG189906_p65 | hypothetical protein | phrog_229 | MazG-like pyrophosphatase | other | 1 | 47046 | 47678 |
| ATS92393.1 | MG189906_p122 | hypothetical protein | singleton | unknown function | unknown function | 1 | 78936 | 79166 |
| ATS92281.1 | MG189906_p2 | ParB-like nuclease domain protein | singleton | unknown function | unknown function | 1 | 1892 | 3232 |
| ATS92280.1 | MG189906_p58 | superfamily II DNA or RNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 41981 | 43345 |
| ATS92344.1 | MG189906_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29426 | 29854 |
| ATS92371.1 | MG189906_p114 | hypothetical protein | phrog_21015 | unknown function | unknown function | 1 | 75496 | 75813 |
| ATS92367.1 | MG189906_p129 | hypothetical protein | phrog_26100 | unknown function | unknown function | 1 | 81633 | 81974 |
| ATS92293.1 | MG189906_p28 | tail fiber protein | phrog_24534 | tail fiber protein | tail | 1 | 25139 | 26155 |
| ATS92397.1 | MG189906_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37121 | 37333 |
| ATS92312.1 | MG189906_p56 | hypothetical protein | phrog_17226 | unknown function | unknown function | 1 | 40948 | 41721 |
| ATS92290.1 | MG189906_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57890 | 58948 |
| ATS92274.1 | MG189906_p108 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 71409 | 73322 |
| ATS92363.1 | MG189906_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60148 | 60513 |
| ATS92318.1 | MG189906_p107 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70799 | 71446 |
| ATS92278.1 | MG189906_p104 | n-acetyl-alpha-d-glucosaminyl l-malate synthase | singleton | unknown function | unknown function | 1 | 68211 | 69665 |
| ATS92317.1 | MG189906_p101 | methyltransferase | singleton | unknown function | unknown function | 1 | 66859 | 67539 |
| ATS92380.1 | MG189906_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28747 | 29028 |
| ATS92336.1 | MG189906_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49108 | 49584 |
| ATS92366.1 | MG189906_p138 | hypothetical protein | singleton | unknown function | unknown function | 1 | 87984 | 88325 |
| ATS92416.1 | MG189906_p130 | hypothetical protein | singleton | unknown function | unknown function | -1 | 81954 | 82067 |
| ATS92359.1 | MG189906_p62 | hypothetical protein | phrog_2002 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45319 | 45693 |
| ATS92381.1 | MG189906_p93 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61929 | 62207 |
| ATS92368.1 | MG189906_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56097 | 56438 |
| ATS92348.1 | MG189906_p137 | hypothetical protein | singleton | unknown function | unknown function | 1 | 87566 | 87982 |
| ATS92305.1 | MG189906_p106 | ParBc | phrog_26387 | ParB-like partition nuclease | DNA, RNA and nucleotide metabolism | 1 | 69945 | 70799 |
| ATS92405.1 | MG189906_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59778 | 59954 |
| ATS92296.1 | MG189906_p27 | tail assembly protein | phrog_9600 | tail assembly protein | tail | 1 | 24164 | 25135 |
| ATS92362.1 | MG189906_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43746 | 44117 |
| ATS92326.1 | MG189906_p96 | hypothetical protein | phrog_1372 | unknown function | unknown function | 1 | 63306 | 63899 |
| ATS92302.1 | MG189906_p131 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 82047 | 82943 |
| ATS92322.1 | MG189906_p95 | rhomboid membrane protein | singleton | unknown function | unknown function | 1 | 62627 | 63247 |
| ATS92417.1 | MG189906_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48912 | 49025 |
| ATS92308.1 | MG189906_p66 | hypothetical protein | phrog_17202 | unknown function | unknown function | 1 | 47761 | 48564 |
| ATS92350.1 | MG189906_p34 | DUF2500 containing protein | singleton | unknown function | unknown function | 1 | 28353 | 28769 |
| ATS92383.1 | MG189906_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6400 | 6669 |
| ATS92339.1 | MG189906_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60510 | 60977 |
| ATS92324.1 | MG189906_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7516 | 8127 |
| ATS92282.1 | MG189906_p53 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 38053 | 39342 |
| ATS92284.1 | MG189906_p134 | hypothetical protein | phrog_10401 | ATPase | other | 1 | 83709 | 84920 |
| ATS92384.1 | MG189906_p147 | hypothetical protein | singleton | unknown function | unknown function | 1 | 95076 | 95336 |
| ATS92376.1 | MG189906_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9068 | 9361 |
| ATS92338.1 | MG189906_p140 | tyrosine phosphatase family protein | phrog_17568 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 88682 | 89152 |
| ATS92403.1 | MG189906_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59963 | 60145 |
| ATS92335.1 | MG189906_p145 | hypothetical protein | singleton | unknown function | unknown function | 1 | 92173 | 92655 |
| ATS92386.1 | MG189906_p144 | hypothetical protein | singleton | unknown function | unknown function | 1 | 91922 | 92176 |
| ATS92342.1 | MG189906_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8546 | 8995 |
| ATS92373.1 | MG189906_p124 | hypothetical protein | singleton | unknown function | unknown function | 1 | 79534 | 79842 |
| ATS92325.1 | MG189906_p3 | serine protease | phrog_15223 | protease | other | 1 | 3288 | 3890 |
| ATS92413.1 | MG189906_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29128 | 29262 |
| ATS92345.1 | MG189906_p29 | hypothetical protein | phrog_28727 | holin | lysis | 1 | 26232 | 26660 |
| ATS92299.1 | MG189906_p6 | major capsid protein | phrog_1623 | virion structural protein | head and packaging | 1 | 5387 | 6319 |
| ATS92370.1 | MG189906_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57504 | 57824 |
| ATS92276.1 | MG189906_p20 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 17525 | 19201 |
| ATS92354.1 | MG189906_p139 | transcriptional repressor | singleton | unknown function | unknown function | 1 | 88294 | 88692 |
| ATS92307.1 | MG189906_p21 | minor tail protein | phrog_778 | tail assembly protein | tail | 1 | 19198 | 20016 |
| ATS92395.1 | MG189906_p57 | hypothetical protein | phrog_8389 | unknown function | unknown function | 1 | 41757 | 41984 |
| ATS92310.1 | MG189906_p149 | hypothetical protein | singleton | unknown function | unknown function | 1 | 95725 | 96516 |
| ATS92294.1 | MG189906_p25 | tail assembly protein | phrog_19976 | tail assembly protein | tail | 1 | 22979 | 23977 |
| ATS92411.1 | MG189906_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48749 | 48907 |
| ATS92400.1 | MG189906_p102 | hypothetical protein | singleton | unknown function | unknown function | 1 | 67595 | 67795 |
| ATS92360.1 | MG189906_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9372 | 9746 |
| ATS92357.1 | MG189906_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49873 | 50262 |
| ATS92327.1 | MG189906_p135 | hypothetical protein | singleton | unknown function | unknown function | 1 | 84917 | 85489 |
| ATS92320.1 | MG189906_p98 | PIG-L family deacetylase | phrog_11796 | unknown function | unknown function | 1 | 64232 | 64870 |
| ATS92346.1 | MG189906_p103 | hypothetical protein | singleton | unknown function | unknown function | 1 | 67792 | 68214 |
| ATS92279.1 | MG189906_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34387 | 35778 |
| ATS92378.1 | MG189906_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35778 | 36062 |
| ATS92406.1 | MG189906_p26 | tail assembly protein | phrog_26999 | tail assembly protein | tail | 1 | 23980 | 24156 |
| ATS92361.1 | MG189906_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59159 | 59530 |
| ATS92349.1 | MG189906_p132 | hypothetical protein | singleton | unknown function | unknown function | 1 | 82940 | 83356 |
| ATS92385.1 | MG189906_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63899 | 64156 |
| ATS92333.1 | MG189906_p15 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 10518 | 11012 |
| ATS92277.1 | MG189906_p18 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 14965 | 16548 |
| ATS92287.1 | MG189906_p41 | hypothetical protein | phrog_10401 | ATPase | other | 1 | 30532 | 31689 |
| ATS92372.1 | MG189906_p105 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69662 | 69973 |