| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG214783 |
Definition |
Sinorhizobium phage HMSP1-Susan, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
51963 |
Host Name |
Sinorhizobium meliloti |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
52.51 |
Number of singletons |
56 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATS92119.1 | MG214783_p73 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | -1 | 44573 | 45061 |
| ATS92139.1 | MG214783_p95 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51000 | 51284 |
| ATS92097.1 | MG214783_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29275 | 29520 |
| ATS92100.1 | MG214783_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30620 | 30973 |
| ATS92127.2 | MG214783_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47553 | 47717 |
| ATS92184.1 | MG214783_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24154 | 24372 |
| ATS92167.1 | MG214783_p28 | head protein | phrog_530 | head maturation protease | head and packaging | 1 | 12026 | 13159 |
| ATS92177.1 | MG214783_p38 | hypothetical protein | phrog_8985 | tail tube protein | tail | 1 | 17130 | 17486 |
| ATS92148.2 | MG214783_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1739 | 1936 |
| ATS92111.1 | MG214783_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39373 | 39606 |
| ATS92150.1 | MG214783_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2282 | 2917 |
| ATS92143.1 | MG214783_p3 | hypothetical protein | phrog_32808 | unknown function | unknown function | 1 | 1000 | 1215 |
| ATS92110.1 | MG214783_p64 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 37647 | 39266 |
| ATS92156.1 | MG214783_p15 | transcriptional regulator | phrog_7950 | transcriptional repressor | transcription regulation | 1 | 4036 | 4251 |
| ATS92171.1 | MG214783_p32 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 15128 | 15556 |
| ATS92129.1 | MG214783_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48252 | 48581 |
| ATS92147.1 | MG214783_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1545 | 1733 |
| ATS92132.1 | MG214783_p89 | hypothetical protein | phrog_14341 | transcriptional repressor | transcription regulation | -1 | 49387 | 49935 |
| ATS92144.1 | MG214783_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 829 | 981 |
| ATS92108.1 | MG214783_p62 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 36909 | 37268 |
| ATS92102.1 | MG214783_p56 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 31402 | 33330 |
| ATS92099.1 | MG214783_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29638 | 30096 |
| ATS92134.1 | MG214783_p90 | hypothetical protein | phrog_17551 | unknown function | unknown function | -1 | 49925 | 50128 |
| ATS92140.2 | MG214783_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51320 | 51691 |
| ATS92182.1 | MG214783_p43 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 20912 | 21346 |
| ATS92181.1 | MG214783_p42 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 20341 | 20904 |
| ATS92180.1 | MG214783_p41 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 19724 | 20341 |
| ATS92162.1 | MG214783_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7523 | 7768 |
| ATS92163.1 | MG214783_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7747 | 8529 |
| AVI24634.1 | MG214783_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7251 | 7544 |
| ATS92174.1 | MG214783_p36 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 16229 | 16654 |
| ATS92136.1 | MG214783_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50313 | 50573 |
| ATS92164.1 | MG214783_p24 | head protein | phrog_146 | portal protein | head and packaging | 1 | 8628 | 10418 |
| ATS92152.1 | MG214783_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2917 | 3225 |
| ATS92118.2 | MG214783_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44352 | 44576 |
| ATS92107.1 | MG214783_p61 | hypothetical protein | phrog_29341 | unknown function | unknown function | -1 | 36201 | 36818 |
| ATS92121.1 | MG214783_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45244 | 45537 |
| AVI24639.1 | MG214783_p81 | hypothetical protein | phrog_13631 | unknown function | unknown function | -1 | 46620 | 47027 |
| ATS92157.1 | MG214783_p16 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 4253 | 4810 |
| ATS92114.1 | MG214783_p68 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 40334 | 41080 |
| ATS92158.1 | MG214783_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4807 | 5025 |
| ATS92122.1 | MG214783_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45530 | 45691 |
| ATS92155.1 | MG214783_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3594 | 4025 |
| ATS92098.1 | MG214783_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30069 | 30623 |
| ATS92175.1 | MG214783_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16078 | 16239 |
| ATS92125.1 | MG214783_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46391 | 46627 |
| ATS92131.1 | MG214783_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48925 | 49128 |
| ATS92183.1 | MG214783_p44 | tail protein | phrog_5616 | tail fiber protein | tail | 1 | 21347 | 24139 |
| AVI24638.1 | MG214783_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46297 | 46413 |
| ATS92169.1 | MG214783_p30 | capsid protein | phrog_264 | major head protein | head and packaging | 1 | 13694 | 14656 |
| ATS92105.1 | MG214783_p59 | integrase | singleton | unknown function | unknown function | -1 | 34550 | 35032 |
| ATS92115.1 | MG214783_p69 | DNA primase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 41077 | 43335 |
| ATS92178.1 | MG214783_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17579 | 17716 |
| ATS92109.1 | MG214783_p63 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 37303 | 37650 |
| ATS92101.1 | MG214783_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31071 | 31343 |
| ATS92161.2 | MG214783_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6899 | 7249 |
| ATS92096.2 | MG214783_p49 | chitinase-like protein | phrog_14712 | chitinase | moron, auxiliary metabolic gene and host takeover | 1 | 28254 | 29288 |
| ATS92137.1 | MG214783_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50570 | 50806 |
| ATS92128.2 | MG214783_p84 | hypothetical protein | phrog_799 | DNA methyltransferase | other | -1 | 47747 | 48259 |
| ATS92112.1 | MG214783_p66 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39603 | 40106 |
| ATS92142.1 | MG214783_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1 | 786 |
| ATS92149.1 | MG214783_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1933 | 2118 |
| ATS92186.2 | MG214783_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25891 | 26082 |
| ATS92130.1 | MG214783_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48578 | 48838 |
| ATS92168.1 | MG214783_p29 | hypothetical protein | phrog_563 | virion structural protein | head and packaging | 1 | 13196 | 13663 |
| ATS92146.1 | MG214783_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1358 | 1555 |
| ATS92123.1 | MG214783_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45739 | 46128 |
| ATS92117.2 | MG214783_p71 | hypothetical protein | phrog_27218 | unknown function | unknown function | -1 | 43634 | 44374 |
| ATS92159.1 | MG214783_p18 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 5022 | 6695 |
| ATS92185.2 | MG214783_p46 | hypothetical protein | phrog_21060 | unknown function | unknown function | 1 | 24385 | 25884 |
| ATS92145.1 | MG214783_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1212 | 1361 |
| ATS92135.1 | MG214783_p91 | hypothetical protein | phrog_17551 | unknown function | unknown function | -1 | 50125 | 50316 |
| AVI24637.1 | MG214783_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29426 | 29650 |
| ATS92116.1 | MG214783_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43358 | 43558 |
| ATS92124.1 | MG214783_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46154 | 46294 |
| ATS92165.1 | MG214783_p25 | head morphogenesis protein | phrog_324 | head morphogenesis | head and packaging | 1 | 10411 | 11229 |
| ATS92106.1 | MG214783_p60 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 35029 | 36132 |
| ATS92103.1 | MG214783_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33327 | 33458 |
| ATS92170.1 | MG214783_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14824 | 15102 |
| ATS92151.1 | MG214783_p9 | ATP dependent helicase | singleton | unknown function | unknown function | 1 | 2115 | 2285 |
| ATS92173.1 | MG214783_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15906 | 16088 |
| ATS92154.1 | MG214783_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3376 | 3597 |
| ATS92176.1 | MG214783_p37 | hypothetical protein | phrog_13196 | major tail protein | tail | 1 | 16679 | 17128 |
| ATS92104.1 | MG214783_p58 | hypothetical protein | phrog_7011 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 33592 | 34557 |
| ATS92138.1 | MG214783_p94 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50812 | 50997 |
| AVI24635.1 | MG214783_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11784 | 11903 |
| ATS92120.1 | MG214783_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45061 | 45192 |
| ATS92160.2 | MG214783_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6775 | 6933 |
| ATS92166.1 | MG214783_p26 | tail assembly protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 11279 | 11695 |
| AVI24636.1 | MG214783_p48 | tail protein | phrog_24607 | tail protein | tail | 1 | 26066 | 28228 |
| ATS92126.1 | MG214783_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47020 | 47550 |
| ATS92172.2 | MG214783_p33 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 15544 | 15906 |
| ATS92153.1 | MG214783_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3203 | 3373 |
| ATS92179.1 | MG214783_p40 | hypothetical protein | phrog_8892 | tail length tape measure protein | tail | 1 | 17721 | 19724 |
| ATS92133.1 | MG214783_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49232 | 49390 |
| ATS92113.1 | MG214783_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40079 | 40333 |