| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG241338 |
Definition |
Salmonella phage YSP2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus; Salmonella virus YSP2. |
DB of origin |
NUCCORE |
Length |
50316 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
42.87 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATW57809.1 | MG241338_p50 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 33003 | 33374 |
| ATW57805.1 | MG241338_p46 | tape measure chaperone protein | phrog_569 | tail length tape measure protein | tail | -1 | 31122 | 31436 |
| ATW57784.1 | MG241338_p25 | hypothetical protein | phrog_2676 | unknown function | unknown function | -1 | 10132 | 10398 |
| ATW57774.1 | MG241338_p15 | hypothetical protein | phrog_12725 | unknown function | unknown function | 1 | 4816 | 5064 |
| ATW57834.1 | MG241338_p75 | hypothetical protein | phrog_35378 | unknown function | unknown function | -1 | 45835 | 46116 |
| ATW57833.1 | MG241338_p74 | hypothetical protein | phrog_16293 | unknown function | unknown function | -1 | 45656 | 45838 |
| ATW57812.1 | MG241338_p53 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 35235 | 35588 |
| ATW57815.1 | MG241338_p56 | hypothetical protein | phrog_324 | head morphogenesis | head and packaging | -1 | 37317 | 37988 |
| ATW57767.1 | MG241338_p8 | hypothetical protein | phrog_5016 | unknown function | unknown function | 1 | 2392 | 2625 |
| ATW57763.1 | MG241338_p4 | hypothetical protein | phrog_7421 | unknown function | unknown function | 1 | 1297 | 1521 |
| ATW57771.1 | MG241338_p12 | hypothetical protein | phrog_9323 | unknown function | unknown function | 1 | 3265 | 3489 |
| ATW57814.1 | MG241338_p55 | capsid and scaffold protein | phrog_530 | head maturation protease | head and packaging | -1 | 36211 | 37320 |
| ATW57806.1 | MG241338_p47 | hypothetical protein | phrog_584 | major tail protein | tail | -1 | 31514 | 32173 |
| ATW57768.1 | MG241338_p9 | hypothetical protein | phrog_30800 | unknown function | unknown function | 1 | 2622 | 2819 |
| ATW57844.1 | MG241338_p85 | hypothetical protein | phrog_31863 | unknown function | unknown function | -1 | 49146 | 49394 |
| ATW57760.1 | MG241338_p1 | hypothetical protein | phrog_21159 | unknown function | unknown function | 1 | 287 | 721 |
| ATW57761.1 | MG241338_p2 | hypothetical protein | phrog_4653 | unknown function | unknown function | 1 | 797 | 955 |
| ATW57778.1 | MG241338_p19 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | -1 | 7242 | 7631 |
| ATW57790.1 | MG241338_p31 | DNA primase/helicase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 14629 | 15555 |
| ATW57835.1 | MG241338_p76 | hypothetical protein | phrog_14011 | unknown function | unknown function | -1 | 46194 | 46382 |
| ATW57801.1 | MG241338_p42 | tail tip assembly protein | phrog_18 | minor tail protein | tail | -1 | 26685 | 27443 |
| ATW57800.1 | MG241338_p41 | minor tail protein | phrog_30 | minor tail protein | tail | -1 | 25966 | 26688 |
| ATW57794.1 | MG241338_p35 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 18976 | 19587 |
| ATW57821.1 | MG241338_p62 | hypothetical protein | phrog_6666 | unknown function | unknown function | -1 | 41924 | 42085 |
| ATW57780.1 | MG241338_p21 | holin | phrog_2877 | holin | lysis | -1 | 8135 | 8350 |
| ATW57799.1 | MG241338_p40 | tail component | phrog_32 | tail assembly protein | tail | -1 | 25374 | 25973 |
| ATW57765.1 | MG241338_p6 | hypothetical protein | phrog_6503 | unknown function | unknown function | 1 | 1751 | 1945 |
| ATW57826.1 | MG241338_p67 | hypothetical protein | phrog_6031 | unknown function | unknown function | -1 | 43368 | 43577 |
| ATW57808.1 | MG241338_p49 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 32570 | 33010 |
| ATW57779.1 | MG241338_p20 | lysin | phrog_7 | endolysin | lysis | -1 | 7628 | 8122 |
| ATW57775.1 | MG241338_p16 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 5132 | 6712 |
| ATW57813.1 | MG241338_p54 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 35719 | 36198 |
| ATW57770.1 | MG241338_p11 | polyribonucleotide nucleotidyltransferase | phrog_4344 | unknown function | unknown function | 1 | 3042 | 3263 |
| ATW57764.1 | MG241338_p5 | hypothetical protein | phrog_14152 | unknown function | unknown function | 1 | 1518 | 1754 |
| ATW57843.1 | MG241338_p84 | hypothetical protein | phrog_18849 | unknown function | unknown function | -1 | 48910 | 49146 |
| ATW57817.1 | MG241338_p58 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 39333 | 40904 |
| ATW57782.1 | MG241338_p23 | hypothetical protein | phrog_2817 | unknown function | unknown function | -1 | 9672 | 9914 |
| ATW57795.1 | MG241338_p36 | tail length tape-measure protein | phrog_11265 | tail length tape measure protein | tail | -1 | 19634 | 19924 |
| ATW57769.1 | MG241338_p10 | hypothetical protein | phrog_16768 | unknown function | unknown function | 1 | 2816 | 2983 |
| ATW57840.1 | MG241338_p81 | hypothetical protein | phrog_16871 | unknown function | unknown function | -1 | 48198 | 48404 |
| ATW57820.1 | MG241338_p61 | hypothetical protein | phrog_2919 | unknown function | unknown function | -1 | 41752 | 41940 |
| ATW57766.1 | MG241338_p7 | hypothetical protein | phrog_6147 | unknown function | unknown function | 1 | 2111 | 2392 |
| ATW57776.1 | MG241338_p17 | hypothetical protein | phrog_2794 | unknown function | unknown function | 1 | 6715 | 7107 |
| ATW57797.1 | MG241338_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21118 | 21228 |
| ATW57839.1 | MG241338_p80 | hypothetical protein | phrog_7116 | unknown function | unknown function | -1 | 47558 | 48121 |
| ATW57823.1 | MG241338_p64 | hypothetical protein | phrog_1312 | unknown function | unknown function | -1 | 42497 | 42625 |
| ATW57788.1 | MG241338_p29 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 11900 | 13873 |
| ATW57793.1 | MG241338_p34 | single-strand DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 18439 | 18885 |
| ATW57829.1 | MG241338_p70 | hypothetical protein | phrog_14912 | unknown function | unknown function | -1 | 44403 | 44585 |
| ATW57785.1 | MG241338_p26 | dam methylase | phrog_111 | DNA methyltransferase | other | -1 | 10401 | 11138 |
| ATW57798.1 | MG241338_p39 | tail fiber protein | phrog_31 | central tail fiber J | tail | -1 | 21516 | 25292 |
| ATW57825.1 | MG241338_p66 | hypothetical protein | phrog_11097 | unknown function | unknown function | -1 | 43120 | 43371 |
| ATW57830.1 | MG241338_p71 | hypothetical protein | phrog_9122 | unknown function | unknown function | -1 | 44582 | 44776 |
| ATW57818.1 | MG241338_p59 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | -1 | 40916 | 41440 |
| ATW57842.1 | MG241338_p83 | hypothetical protein | phrog_22353 | unknown function | unknown function | -1 | 48806 | 48913 |
| ATW57819.1 | MG241338_p60 | hypothetical protein | phrog_5976 | unknown function | unknown function | -1 | 41528 | 41758 |
| ATW57791.1 | MG241338_p32 | tail fibers protein | phrog_5481 | tail fiber protein | tail | 1 | 15711 | 18119 |
| ATW57816.1 | MG241338_p57 | portal protein | phrog_146 | portal protein | head and packaging | -1 | 37985 | 39280 |
| ATW57762.1 | MG241338_p3 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 939 | 1223 |
| ATW57837.1 | MG241338_p78 | hypothetical protein | phrog_17726 | unknown function | unknown function | -1 | 47031 | 47138 |
| ATW57838.1 | MG241338_p79 | hypothetical protein | phrog_8382 | unknown function | unknown function | -1 | 47214 | 47498 |
| ATW57822.1 | MG241338_p63 | hypothetical protein | phrog_303 | unknown function | unknown function | -1 | 42268 | 42495 |
| ATW57796.1 | MG241338_p37 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 20000 | 21055 |
| ATW57804.1 | MG241338_p45 | tape measure chaperone protein | phrog_680 | tail length tape measure protein | tail | -1 | 30805 | 31074 |
| ATW57836.1 | MG241338_p77 | 3'-phosphatase, 5'-polynucleotide kinase | phrog_415 | polynucleotide kinase | other | -1 | 46467 | 47027 |
| ATW57811.1 | MG241338_p52 | major capsid protein | phrog_264 | major head protein | head and packaging | -1 | 34171 | 35145 |
| ATW57773.1 | MG241338_p14 | hypothetical protein | phrog_2684 | unknown function | unknown function | 1 | 4457 | 4819 |
| ATW57831.1 | MG241338_p72 | hypothetical protein | phrog_25318 | unknown function | unknown function | -1 | 44779 | 45009 |
| ATW57786.1 | MG241338_p27 | hypothetical protein | phrog_7420 | unknown function | unknown function | -1 | 11140 | 11418 |
| ATW57827.1 | MG241338_p68 | hypothetical protein | phrog_13504 | unknown function | unknown function | -1 | 43652 | 44149 |
| ATW57828.1 | MG241338_p69 | hypothetical protein | phrog_8758 | unknown function | unknown function | -1 | 44161 | 44406 |
| ATW57772.1 | MG241338_p13 | hypothetical protein | phrog_757 | DNA methyltransferase | other | 1 | 3689 | 4384 |
| ATW57781.1 | MG241338_p22 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 8463 | 9578 |
| ATW57845.1 | MG241338_p86 | hypothetical protein | phrog_4841 | unknown function | unknown function | -1 | 49395 | 49868 |
| ATW57783.1 | MG241338_p24 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 9895 | 10059 |
| ATW57824.1 | MG241338_p65 | hypothetical protein | phrog_6144 | unknown function | unknown function | -1 | 42695 | 43123 |
| ATW57787.1 | MG241338_p28 | hypothetical protein | phrog_824 | unknown function | unknown function | -1 | 11490 | 11897 |
| ATW57789.1 | MG241338_p30 | hypothetical protein | phrog_2856 | transcriptional regulator | transcription regulation | 1 | 13962 | 14570 |
| ATW57802.1 | MG241338_p43 | minor tail protein | phrog_14 | minor tail protein | tail | -1 | 27511 | 27858 |
| ATW57846.1 | MG241338_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49990 | 50094 |
| ATW57810.1 | MG241338_p51 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | -1 | 33371 | 33790 |
| ATW57803.1 | MG241338_p44 | tail protein | phrog_24 | tail length tape measure protein | tail | -1 | 27858 | 30767 |
| ATW57792.1 | MG241338_p33 | hypothetical protein | phrog_7239 | unknown function | unknown function | 1 | 18232 | 18426 |
| ATW57832.1 | MG241338_p73 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 45088 | 45663 |
| ATW57807.1 | MG241338_p48 | tail protein | phrog_179 | tail terminator | connector | -1 | 32188 | 32580 |
| ATW57777.1 | MG241338_p18 | hypothetical protein | phrog_9539 | unknown function | unknown function | 1 | 7091 | 7228 |
| ATW57841.1 | MG241338_p82 | hypothetical protein | phrog_13854 | unknown function | unknown function | -1 | 48413 | 48673 |