Genomic map of Salmonella phage YSP2 (MG241338)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG241338
Definition
Salmonella phage YSP2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus; Salmonella virus YSP2.
DB of origin
NUCCORE
Length
50316
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
42.87
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATW57809.1 MG241338_p50 hypothetical protein phrog_161 head closure Hc1 connector -1 33003 33374
ATW57805.1 MG241338_p46 tape measure chaperone protein phrog_569 tail length tape measure protein tail -1 31122 31436
ATW57784.1 MG241338_p25 hypothetical protein phrog_2676 unknown function unknown function -1 10132 10398
ATW57774.1 MG241338_p15 hypothetical protein phrog_12725 unknown function unknown function 1 4816 5064
ATW57834.1 MG241338_p75 hypothetical protein phrog_35378 unknown function unknown function -1 45835 46116
ATW57833.1 MG241338_p74 hypothetical protein phrog_16293 unknown function unknown function -1 45656 45838
ATW57812.1 MG241338_p53 hypothetical protein phrog_1989 unknown function unknown function -1 35235 35588
ATW57815.1 MG241338_p56 hypothetical protein phrog_324 head morphogenesis head and packaging -1 37317 37988
ATW57767.1 MG241338_p8 hypothetical protein phrog_5016 unknown function unknown function 1 2392 2625
ATW57763.1 MG241338_p4 hypothetical protein phrog_7421 unknown function unknown function 1 1297 1521
ATW57771.1 MG241338_p12 hypothetical protein phrog_9323 unknown function unknown function 1 3265 3489
ATW57814.1 MG241338_p55 capsid and scaffold protein phrog_530 head maturation protease head and packaging -1 36211 37320
ATW57806.1 MG241338_p47 hypothetical protein phrog_584 major tail protein tail -1 31514 32173
ATW57768.1 MG241338_p9 hypothetical protein phrog_30800 unknown function unknown function 1 2622 2819
ATW57844.1 MG241338_p85 hypothetical protein phrog_31863 unknown function unknown function -1 49146 49394
ATW57760.1 MG241338_p1 hypothetical protein phrog_21159 unknown function unknown function 1 287 721
ATW57761.1 MG241338_p2 hypothetical protein phrog_4653 unknown function unknown function 1 797 955
ATW57778.1 MG241338_p19 hypothetical protein phrog_1804 Rz-like spanin lysis -1 7242 7631
ATW57790.1 MG241338_p31 DNA primase/helicase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 14629 15555
ATW57835.1 MG241338_p76 hypothetical protein phrog_14011 unknown function unknown function -1 46194 46382
ATW57801.1 MG241338_p42 tail tip assembly protein phrog_18 minor tail protein tail -1 26685 27443
ATW57800.1 MG241338_p41 minor tail protein phrog_30 minor tail protein tail -1 25966 26688
ATW57794.1 MG241338_p35 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 18976 19587
ATW57821.1 MG241338_p62 hypothetical protein phrog_6666 unknown function unknown function -1 41924 42085
ATW57780.1 MG241338_p21 holin phrog_2877 holin lysis -1 8135 8350
ATW57799.1 MG241338_p40 tail component phrog_32 tail assembly protein tail -1 25374 25973
ATW57765.1 MG241338_p6 hypothetical protein phrog_6503 unknown function unknown function 1 1751 1945
ATW57826.1 MG241338_p67 hypothetical protein phrog_6031 unknown function unknown function -1 43368 43577
ATW57808.1 MG241338_p49 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 32570 33010
ATW57779.1 MG241338_p20 lysin phrog_7 endolysin lysis -1 7628 8122
ATW57775.1 MG241338_p16 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism 1 5132 6712
ATW57813.1 MG241338_p54 hypothetical protein phrog_1989 unknown function unknown function -1 35719 36198
ATW57770.1 MG241338_p11 polyribonucleotide nucleotidyltransferase phrog_4344 unknown function unknown function 1 3042 3263
ATW57764.1 MG241338_p5 hypothetical protein phrog_14152 unknown function unknown function 1 1518 1754
ATW57843.1 MG241338_p84 hypothetical protein phrog_18849 unknown function unknown function -1 48910 49146
ATW57817.1 MG241338_p58 terminase large subunit phrog_38 terminase large subunit head and packaging -1 39333 40904
ATW57782.1 MG241338_p23 hypothetical protein phrog_2817 unknown function unknown function -1 9672 9914
ATW57795.1 MG241338_p36 tail length tape-measure protein phrog_11265 tail length tape measure protein tail -1 19634 19924
ATW57769.1 MG241338_p10 hypothetical protein phrog_16768 unknown function unknown function 1 2816 2983
ATW57840.1 MG241338_p81 hypothetical protein phrog_16871 unknown function unknown function -1 48198 48404
ATW57820.1 MG241338_p61 hypothetical protein phrog_2919 unknown function unknown function -1 41752 41940
ATW57766.1 MG241338_p7 hypothetical protein phrog_6147 unknown function unknown function 1 2111 2392
ATW57776.1 MG241338_p17 hypothetical protein phrog_2794 unknown function unknown function 1 6715 7107
ATW57797.1 MG241338_p38 hypothetical protein singleton unknown function unknown function -1 21118 21228
ATW57839.1 MG241338_p80 hypothetical protein phrog_7116 unknown function unknown function -1 47558 48121
ATW57823.1 MG241338_p64 hypothetical protein phrog_1312 unknown function unknown function -1 42497 42625
ATW57788.1 MG241338_p29 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 11900 13873
ATW57793.1 MG241338_p34 single-strand DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 18439 18885
ATW57829.1 MG241338_p70 hypothetical protein phrog_14912 unknown function unknown function -1 44403 44585
ATW57785.1 MG241338_p26 dam methylase phrog_111 DNA methyltransferase other -1 10401 11138
ATW57798.1 MG241338_p39 tail fiber protein phrog_31 central tail fiber J tail -1 21516 25292
ATW57825.1 MG241338_p66 hypothetical protein phrog_11097 unknown function unknown function -1 43120 43371
ATW57830.1 MG241338_p71 hypothetical protein phrog_9122 unknown function unknown function -1 44582 44776
ATW57818.1 MG241338_p59 terminase small subunit phrog_606 terminase small subunit head and packaging -1 40916 41440
ATW57842.1 MG241338_p83 hypothetical protein phrog_22353 unknown function unknown function -1 48806 48913
ATW57819.1 MG241338_p60 hypothetical protein phrog_5976 unknown function unknown function -1 41528 41758
ATW57791.1 MG241338_p32 tail fibers protein phrog_5481 tail fiber protein tail 1 15711 18119
ATW57816.1 MG241338_p57 portal protein phrog_146 portal protein head and packaging -1 37985 39280
ATW57762.1 MG241338_p3 hypothetical protein phrog_1972 unknown function unknown function 1 939 1223
ATW57837.1 MG241338_p78 hypothetical protein phrog_17726 unknown function unknown function -1 47031 47138
ATW57838.1 MG241338_p79 hypothetical protein phrog_8382 unknown function unknown function -1 47214 47498
ATW57822.1 MG241338_p63 hypothetical protein phrog_303 unknown function unknown function -1 42268 42495
ATW57796.1 MG241338_p37 exodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 20000 21055
ATW57804.1 MG241338_p45 tape measure chaperone protein phrog_680 tail length tape measure protein tail -1 30805 31074
ATW57836.1 MG241338_p77 3'-phosphatase, 5'-polynucleotide kinase phrog_415 polynucleotide kinase other -1 46467 47027
ATW57811.1 MG241338_p52 major capsid protein phrog_264 major head protein head and packaging -1 34171 35145
ATW57773.1 MG241338_p14 hypothetical protein phrog_2684 unknown function unknown function 1 4457 4819
ATW57831.1 MG241338_p72 hypothetical protein phrog_25318 unknown function unknown function -1 44779 45009
ATW57786.1 MG241338_p27 hypothetical protein phrog_7420 unknown function unknown function -1 11140 11418
ATW57827.1 MG241338_p68 hypothetical protein phrog_13504 unknown function unknown function -1 43652 44149
ATW57828.1 MG241338_p69 hypothetical protein phrog_8758 unknown function unknown function -1 44161 44406
ATW57772.1 MG241338_p13 hypothetical protein phrog_757 DNA methyltransferase other 1 3689 4384
ATW57781.1 MG241338_p22 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 8463 9578
ATW57845.1 MG241338_p86 hypothetical protein phrog_4841 unknown function unknown function -1 49395 49868
ATW57783.1 MG241338_p24 hypothetical protein phrog_2180 unknown function unknown function -1 9895 10059
ATW57824.1 MG241338_p65 hypothetical protein phrog_6144 unknown function unknown function -1 42695 43123
ATW57787.1 MG241338_p28 hypothetical protein phrog_824 unknown function unknown function -1 11490 11897
ATW57789.1 MG241338_p30 hypothetical protein phrog_2856 transcriptional regulator transcription regulation 1 13962 14570
ATW57802.1 MG241338_p43 minor tail protein phrog_14 minor tail protein tail -1 27511 27858
ATW57846.1 MG241338_p87 hypothetical protein singleton unknown function unknown function 1 49990 50094
ATW57810.1 MG241338_p51 hypothetical protein phrog_302 virion structural protein head and packaging -1 33371 33790
ATW57803.1 MG241338_p44 tail protein phrog_24 tail length tape measure protein tail -1 27858 30767
ATW57792.1 MG241338_p33 hypothetical protein phrog_7239 unknown function unknown function 1 18232 18426
ATW57832.1 MG241338_p73 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other -1 45088 45663
ATW57807.1 MG241338_p48 tail protein phrog_179 tail terminator connector -1 32188 32580
ATW57777.1 MG241338_p18 hypothetical protein phrog_9539 unknown function unknown function 1 7091 7228
ATW57841.1 MG241338_p82 hypothetical protein phrog_13854 unknown function unknown function -1 48413 48673