Genomic map of Pseudomonas phage Pf1 (MG250485)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG250485
Definition
Pseudomonas phage Pf1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Primolicivirus.
DB of origin
NUCCORE
Length
39195
Host Name
Pseudomonas fluorescens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
57.19
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUE23190.1 MG250485_p11 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 7978 8643
AUE23216.1 MG250485_p37 internal virion protein B phrog_805 internal virion protein head and packaging 1 26591 27118
AUE23206.1 MG250485_p27 hypothetical protein phrog_1447 unknown function unknown function 1 18045 18287
AUE23180.1 MG250485_p1 hypothetical protein phrog_7806 unknown function unknown function 1 1026 1505
AUE23197.1 MG250485_p18 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 11327 11866
AUE23215.1 MG250485_p36 internal virion protein A phrog_308 internal virion protein head and packaging 1 26287 26580
AUE23182.1 MG250485_p3 hypothetical protein phrog_61 2OG-Fe(II) oxygenase moron, auxiliary metabolic gene and host takeover 1 2069 2773
AUE23203.1 MG250485_p24 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16507 16824
AUE23185.1 MG250485_p6 hypothetical protein phrog_13030 RNA polymerase DNA, RNA and nucleotide metabolism 1 5663 5800
AUE23222.1 MG250485_p43 DNA packaging protein small subunit phrog_1351 terminase small subunit head and packaging 1 36077 36334
AUE23205.1 MG250485_p26 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17023 17913
AUE23201.1 MG250485_p22 hypothetical protein phrog_9312 unknown function unknown function 1 13827 14336
AUE23184.1 MG250485_p5 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 2992 5649
AUE23200.1 MG250485_p21 hypothetical protein phrog_9727 unknown function unknown function 1 13560 13763
AUE23210.1 MG250485_p31 head-tail connector protein phrog_449 head-tail adaptor connector 1 19291 20916
AUE23214.1 MG250485_p35 tail tubular protein B phrog_457 tail protein tail 1 23661 26087
AUE23181.1 MG250485_p2 hypothetical protein phrog_8679 unknown function unknown function 1 1536 2072
AUE23192.1 MG250485_p13 hypothetical protein phrog_5138 unknown function unknown function 1 8803 9168
AUE23221.1 MG250485_p42 type II holin phrog_920 holin lysis 1 35865 36080
AUE23225.1 MG250485_p46 DNA packaging protein B phrog_15524 terminase large subunit head and packaging 1 37733 38527
AUE23226.1 MG250485_p47 hypothetical protein phrog_2193 unknown function unknown function 1 38708 38881
AUE23186.1 MG250485_p7 hypothetical protein phrog_11287 unknown function unknown function 1 5797 6069
AUE23223.1 MG250485_p44 Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 36334 36783
AUE23191.1 MG250485_p12 host RNA-polymerase inhibitor singleton unknown function unknown function 1 8640 8798
AUE23212.1 MG250485_p33 major capsid protein phrog_267 major head protein head and packaging 1 21960 23000
AUE23202.1 MG250485_p23 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 14347 16494
AUE23183.1 MG250485_p4 hypothetical protein singleton unknown function unknown function 1 2773 2931
AUE23198.1 MG250485_p19 primase/helicase singleton unknown function unknown function 1 11853 12131
AUE23195.1 MG250485_p16 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10366 10815
AUE23224.1 MG250485_p45 DNA packaging protein B phrog_4758 terminase large subunit head and packaging 1 36783 37727
AUE23194.1 MG250485_p15 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9926 10405
AUE23219.1 MG250485_p40 tail fiber protein phrog_4242 tail fiber protein tail 1 33640 35469
AUE23213.1 MG250485_p34 tail tubular protein A phrog_446 tail protein tail 1 23064 23651
AUE23187.1 MG250485_p8 hypothetical protein phrog_12775 unknown function unknown function 1 6069 6455
AUE23207.1 MG250485_p28 hypothetical protein phrog_1391 unknown function unknown function 1 18290 18562
AUE23217.1 MG250485_p38 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27170 29386
AUE23209.1 MG250485_p30 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18974 19276
AUE23211.1 MG250485_p32 capsid assembly protein phrog_1052 head assembly head and packaging 1 20985 21860
AUE23208.1 MG250485_p29 hypothetical protein phrog_3986 unknown function unknown function 1 18559 19002
AUE23199.1 MG250485_p20 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 12309 13541
AUE23188.1 MG250485_p9 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 6467 7531
AUE23218.1 MG250485_p39 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29399 33577
AUE23189.1 MG250485_p10 hypothetical protein phrog_1777 unknown function unknown function 1 7724 7981
AUE23220.1 MG250485_p41 hypothetical protein phrog_1795 tail fiber protein tail 1 35509 35865
AUE23193.1 MG250485_p14 single-stranded DNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9222 9926
AUE23196.1 MG250485_p17 lysozyme phrog_822 amidase lysis 1 10817 11257
AUE23204.1 MG250485_p25 HNS binding protein phrog_1334 unknown function unknown function 1 16817 17026