| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG250485 |
Definition |
Pseudomonas phage Pf1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Primolicivirus. |
DB of origin |
NUCCORE |
Length |
39195 |
Host Name |
Pseudomonas fluorescens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
47 |
%GC |
57.19 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUE23190.1 | MG250485_p11 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 7978 | 8643 |
| AUE23216.1 | MG250485_p37 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26591 | 27118 |
| AUE23206.1 | MG250485_p27 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 18045 | 18287 |
| AUE23180.1 | MG250485_p1 | hypothetical protein | phrog_7806 | unknown function | unknown function | 1 | 1026 | 1505 |
| AUE23197.1 | MG250485_p18 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 11327 | 11866 |
| AUE23215.1 | MG250485_p36 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26287 | 26580 |
| AUE23182.1 | MG250485_p3 | hypothetical protein | phrog_61 | 2OG-Fe(II) oxygenase | moron, auxiliary metabolic gene and host takeover | 1 | 2069 | 2773 |
| AUE23203.1 | MG250485_p24 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16507 | 16824 |
| AUE23185.1 | MG250485_p6 | hypothetical protein | phrog_13030 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5663 | 5800 |
| AUE23222.1 | MG250485_p43 | DNA packaging protein small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 36077 | 36334 |
| AUE23205.1 | MG250485_p26 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 17023 | 17913 |
| AUE23201.1 | MG250485_p22 | hypothetical protein | phrog_9312 | unknown function | unknown function | 1 | 13827 | 14336 |
| AUE23184.1 | MG250485_p5 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2992 | 5649 |
| AUE23200.1 | MG250485_p21 | hypothetical protein | phrog_9727 | unknown function | unknown function | 1 | 13560 | 13763 |
| AUE23210.1 | MG250485_p31 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 19291 | 20916 |
| AUE23214.1 | MG250485_p35 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23661 | 26087 |
| AUE23181.1 | MG250485_p2 | hypothetical protein | phrog_8679 | unknown function | unknown function | 1 | 1536 | 2072 |
| AUE23192.1 | MG250485_p13 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 8803 | 9168 |
| AUE23221.1 | MG250485_p42 | type II holin | phrog_920 | holin | lysis | 1 | 35865 | 36080 |
| AUE23225.1 | MG250485_p46 | DNA packaging protein B | phrog_15524 | terminase large subunit | head and packaging | 1 | 37733 | 38527 |
| AUE23226.1 | MG250485_p47 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38708 | 38881 |
| AUE23186.1 | MG250485_p7 | hypothetical protein | phrog_11287 | unknown function | unknown function | 1 | 5797 | 6069 |
| AUE23223.1 | MG250485_p44 | Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 36334 | 36783 |
| AUE23191.1 | MG250485_p12 | host RNA-polymerase inhibitor | singleton | unknown function | unknown function | 1 | 8640 | 8798 |
| AUE23212.1 | MG250485_p33 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21960 | 23000 |
| AUE23202.1 | MG250485_p23 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 14347 | 16494 |
| AUE23183.1 | MG250485_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2773 | 2931 |
| AUE23198.1 | MG250485_p19 | primase/helicase | singleton | unknown function | unknown function | 1 | 11853 | 12131 |
| AUE23195.1 | MG250485_p16 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10366 | 10815 |
| AUE23224.1 | MG250485_p45 | DNA packaging protein B | phrog_4758 | terminase large subunit | head and packaging | 1 | 36783 | 37727 |
| AUE23194.1 | MG250485_p15 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9926 | 10405 |
| AUE23219.1 | MG250485_p40 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 33640 | 35469 |
| AUE23213.1 | MG250485_p34 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23064 | 23651 |
| AUE23187.1 | MG250485_p8 | hypothetical protein | phrog_12775 | unknown function | unknown function | 1 | 6069 | 6455 |
| AUE23207.1 | MG250485_p28 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18290 | 18562 |
| AUE23217.1 | MG250485_p38 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27170 | 29386 |
| AUE23209.1 | MG250485_p30 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18974 | 19276 |
| AUE23211.1 | MG250485_p32 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20985 | 21860 |
| AUE23208.1 | MG250485_p29 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 18559 | 19002 |
| AUE23199.1 | MG250485_p20 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12309 | 13541 |
| AUE23188.1 | MG250485_p9 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6467 | 7531 |
| AUE23218.1 | MG250485_p39 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29399 | 33577 |
| AUE23189.1 | MG250485_p10 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 7724 | 7981 |
| AUE23220.1 | MG250485_p41 | hypothetical protein | phrog_1795 | tail fiber protein | tail | 1 | 35509 | 35865 |
| AUE23193.1 | MG250485_p14 | single-stranded DNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9222 | 9926 |
| AUE23196.1 | MG250485_p17 | lysozyme | phrog_822 | amidase | lysis | 1 | 10817 | 11257 |
| AUE23204.1 | MG250485_p25 | HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 16817 | 17026 |