| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG251388 |
Definition |
Pseudomonas phage Psp6, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
42789 |
Host Name |
Pseudomonas putida |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
57.1 |
Number of singletons |
26 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATW62255.1 | MG251388_p2 | hypothetical protein | phrog_198 | holin | lysis | 1 | 2279 | 2662 |
| ATW62315.1 | MG251388_p62 | tail fiber protein | phrog_469 | tail protein | tail | 1 | 39247 | 41979 |
| ATW62286.1 | MG251388_p33 | hypothetical protein | phrog_22847 | unknown function | unknown function | 1 | 19409 | 19525 |
| ATW62277.1 | MG251388_p24 | ParB-like partition protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 14989 | 15840 |
| ATW62298.1 | MG251388_p45 | ATP-dependent Clp endopeptidase proteolytic subunit | phrog_1684 | head maturation protease | head and packaging | 1 | 27839 | 28681 |
| ATW62278.1 | MG251388_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15788 | 16033 |
| ATW62265.1 | MG251388_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7639 | 7953 |
| ATW62259.1 | MG251388_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3931 | 4314 |
| ATW62283.1 | MG251388_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17797 | 18093 |
| ATW62254.1 | MG251388_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 272 | 2248 |
| ATW62312.1 | MG251388_p59 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 37849 | 38364 |
| ATW62258.1 | MG251388_p5 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | 1 | 3447 | 3941 |
| ATW62297.1 | MG251388_p44 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 26611 | 27873 |
| ATW62303.1 | MG251388_p50 | methyltransferase | phrog_6564 | methyltransferase | other | 1 | 31924 | 32559 |
| ATW62305.1 | MG251388_p52 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 32906 | 33259 |
| ATW62270.1 | MG251388_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11201 | 11578 |
| ATW62294.1 | MG251388_p41 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 24289 | 24708 |
| ATW62306.1 | MG251388_p53 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 33249 | 33728 |
| ATW62289.1 | MG251388_p36 | primase | phrog_13901 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 20470 | 22125 |
| ATW62310.1 | MG251388_p57 | hypothetical protein | phrog_337 | tail protein | tail | 1 | 35024 | 35287 |
| ATW62282.1 | MG251388_p29 | hypothetical protein | phrog_5439 | unknown function | unknown function | 1 | 17498 | 17800 |
| ATW62285.1 | MG251388_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19114 | 19455 |
| ATW62269.1 | MG251388_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11004 | 11204 |
| ATW62299.1 | MG251388_p46 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 28681 | 29880 |
| ATW62309.1 | MG251388_p56 | tail assembly chaperone | phrog_1749 | tail assembly chaperone | tail | 1 | 34599 | 34991 |
| ATW62273.1 | MG251388_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13755 | 13973 |
| ATW62302.1 | MG251388_p49 | hypothetical protein | phrog_6804 | unknown function | unknown function | 1 | 31143 | 31973 |
| ATW62267.1 | MG251388_p14 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 9002 | 10138 |
| ATW62275.1 | MG251388_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14616 | 14807 |
| ATW62261.1 | MG251388_p8 | carbon storage regulator | singleton | unknown function | unknown function | -1 | 4508 | 4753 |
| ATW62300.1 | MG251388_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29942 | 30334 |
| ATW62296.1 | MG251388_p43 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 24890 | 26614 |
| ATW62292.1 | MG251388_p39 | HNH endonuclease | phrog_2323 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 23467 | 23769 |
| ATW62308.1 | MG251388_p55 | major tail protein | phrog_158 | major tail protein | tail | 1 | 34111 | 34599 |
| ATW62264.1 | MG251388_p11 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 5558 | 7582 |
| ATW62263.1 | MG251388_p10 | hypothetical protein | singleton | unknown function | unknown function | -1 | 5336 | 5509 |
| ATW62293.1 | MG251388_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23756 | 23953 |
| ATW62268.1 | MG251388_p15 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10138 | 10914 |
| ATW62271.1 | MG251388_p18 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 11575 | 13308 |
| ATW62307.1 | MG251388_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33725 | 33895 |
| ATW62281.1 | MG251388_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17124 | 17498 |
| ATW62262.1 | MG251388_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4916 | 5269 |
| ATW62301.1 | MG251388_p48 | hypothetical protein | phrog_4603 | alpha-2;3-sialyltransferase | other | 1 | 30337 | 30798 |
| ATW62279.1 | MG251388_p26 | hypothetical protein | phrog_8723 | unknown function | unknown function | 1 | 16051 | 16377 |
| ATW62266.1 | MG251388_p13 | polyadenylate binding protein | phrog_7011 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 7957 | 8994 |
| ATW62291.1 | MG251388_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23312 | 23491 |
| ATW62290.1 | MG251388_p37 | primase | singleton | unknown function | unknown function | 1 | 22095 | 23012 |
| ATW62274.1 | MG251388_p21 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13970 | 14461 |
| ATW62288.1 | MG251388_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20207 | 20467 |
| ATW62272.1 | MG251388_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13324 | 13758 |
| ATW62311.1 | MG251388_p58 | tail length tape measure protein | phrog_2854 | tail length tape measure protein | tail | 1 | 35288 | 37852 |
| ATW62284.1 | MG251388_p31 | hypothetical protein | phrog_3527 | unknown function | unknown function | 1 | 18090 | 19124 |
| ATW62276.1 | MG251388_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14807 | 14989 |
| ATW62256.1 | MG251388_p3 | hypothetical protein | phrog_217 | holin | lysis | 1 | 2652 | 2969 |
| ATW62295.1 | MG251388_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24705 | 24893 |
| ATW62260.1 | MG251388_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4329 | 4508 |
| ATW62304.1 | MG251388_p51 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 32559 | 32909 |
| ATW62257.1 | MG251388_p4 | hypothetical protein | phrog_3108 | unknown function | unknown function | 1 | 2966 | 3439 |
| ATW62314.1 | MG251388_p61 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 38849 | 39250 |
| ATW62287.1 | MG251388_p34 | hypothetical protein | phrog_3910 | transcriptional regulator | transcription regulation | 1 | 19589 | 20053 |
| ATW62280.1 | MG251388_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16542 | 16733 |
| ATW62313.1 | MG251388_p60 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 38361 | 38849 |