Genomic map of Pseudomonas phage Psp6 (MG251388)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG251388
Definition
Pseudomonas phage Psp6, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
42789
Host Name
Pseudomonas putida
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
57.1
Number of singletons
26
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATW62255.1 MG251388_p2 hypothetical protein phrog_198 holin lysis 1 2279 2662
ATW62315.1 MG251388_p62 tail fiber protein phrog_469 tail protein tail 1 39247 41979
ATW62286.1 MG251388_p33 hypothetical protein phrog_22847 unknown function unknown function 1 19409 19525
ATW62277.1 MG251388_p24 ParB-like partition protein phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 14989 15840
ATW62298.1 MG251388_p45 ATP-dependent Clp endopeptidase proteolytic subunit phrog_1684 head maturation protease head and packaging 1 27839 28681
ATW62278.1 MG251388_p25 hypothetical protein singleton unknown function unknown function 1 15788 16033
ATW62265.1 MG251388_p12 hypothetical protein singleton unknown function unknown function -1 7639 7953
ATW62259.1 MG251388_p6 hypothetical protein singleton unknown function unknown function -1 3931 4314
ATW62283.1 MG251388_p30 hypothetical protein singleton unknown function unknown function 1 17797 18093
ATW62254.1 MG251388_p1 hypothetical protein singleton unknown function unknown function 1 272 2248
ATW62312.1 MG251388_p59 hypothetical protein phrog_384 virion structural protein head and packaging 1 37849 38364
ATW62258.1 MG251388_p5 hypothetical protein phrog_312 Rz-like spanin lysis 1 3447 3941
ATW62297.1 MG251388_p44 portal protein phrog_12 portal protein head and packaging 1 26611 27873
ATW62303.1 MG251388_p50 methyltransferase phrog_6564 methyltransferase other 1 31924 32559
ATW62305.1 MG251388_p52 hypothetical protein phrog_25 head closure Hc1 connector 1 32906 33259
ATW62270.1 MG251388_p17 hypothetical protein singleton unknown function unknown function 1 11201 11578
ATW62294.1 MG251388_p41 terminase small subunit phrog_83 terminase small subunit head and packaging 1 24289 24708
ATW62306.1 MG251388_p53 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 33249 33728
ATW62289.1 MG251388_p36 primase phrog_13901 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 20470 22125
ATW62310.1 MG251388_p57 hypothetical protein phrog_337 tail protein tail 1 35024 35287
ATW62282.1 MG251388_p29 hypothetical protein phrog_5439 unknown function unknown function 1 17498 17800
ATW62285.1 MG251388_p32 hypothetical protein singleton unknown function unknown function 1 19114 19455
ATW62269.1 MG251388_p16 hypothetical protein singleton unknown function unknown function 1 11004 11204
ATW62299.1 MG251388_p46 major capsid protein phrog_10 major head protein head and packaging 1 28681 29880
ATW62309.1 MG251388_p56 tail assembly chaperone phrog_1749 tail assembly chaperone tail 1 34599 34991
ATW62273.1 MG251388_p20 hypothetical protein singleton unknown function unknown function 1 13755 13973
ATW62302.1 MG251388_p49 hypothetical protein phrog_6804 unknown function unknown function 1 31143 31973
ATW62267.1 MG251388_p14 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 9002 10138
ATW62275.1 MG251388_p22 hypothetical protein singleton unknown function unknown function 1 14616 14807
ATW62261.1 MG251388_p8 carbon storage regulator singleton unknown function unknown function -1 4508 4753
ATW62300.1 MG251388_p47 hypothetical protein singleton unknown function unknown function 1 29942 30334
ATW62296.1 MG251388_p43 terminase large subunit phrog_9 terminase large subunit head and packaging 1 24890 26614
ATW62292.1 MG251388_p39 HNH endonuclease phrog_2323 HNH endonuclease DNA, RNA and nucleotide metabolism 1 23467 23769
ATW62308.1 MG251388_p55 major tail protein phrog_158 major tail protein tail 1 34111 34599
ATW62264.1 MG251388_p11 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 5558 7582
ATW62263.1 MG251388_p10 hypothetical protein singleton unknown function unknown function -1 5336 5509
ATW62293.1 MG251388_p40 hypothetical protein singleton unknown function unknown function 1 23756 23953
ATW62268.1 MG251388_p15 hypothetical protein singleton unknown function unknown function -1 10138 10914
ATW62271.1 MG251388_p18 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 11575 13308
ATW62307.1 MG251388_p54 hypothetical protein singleton unknown function unknown function 1 33725 33895
ATW62281.1 MG251388_p28 hypothetical protein singleton unknown function unknown function 1 17124 17498
ATW62262.1 MG251388_p9 hypothetical protein singleton unknown function unknown function -1 4916 5269
ATW62301.1 MG251388_p48 hypothetical protein phrog_4603 alpha-2;3-sialyltransferase other 1 30337 30798
ATW62279.1 MG251388_p26 hypothetical protein phrog_8723 unknown function unknown function 1 16051 16377
ATW62266.1 MG251388_p13 polyadenylate binding protein phrog_7011 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 7957 8994
ATW62291.1 MG251388_p38 hypothetical protein singleton unknown function unknown function 1 23312 23491
ATW62290.1 MG251388_p37 primase singleton unknown function unknown function 1 22095 23012
ATW62274.1 MG251388_p21 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 13970 14461
ATW62288.1 MG251388_p35 hypothetical protein singleton unknown function unknown function 1 20207 20467
ATW62272.1 MG251388_p19 hypothetical protein singleton unknown function unknown function 1 13324 13758
ATW62311.1 MG251388_p58 tail length tape measure protein phrog_2854 tail length tape measure protein tail 1 35288 37852
ATW62284.1 MG251388_p31 hypothetical protein phrog_3527 unknown function unknown function 1 18090 19124
ATW62276.1 MG251388_p23 hypothetical protein singleton unknown function unknown function 1 14807 14989
ATW62256.1 MG251388_p3 hypothetical protein phrog_217 holin lysis 1 2652 2969
ATW62295.1 MG251388_p42 hypothetical protein singleton unknown function unknown function 1 24705 24893
ATW62260.1 MG251388_p7 hypothetical protein singleton unknown function unknown function -1 4329 4508
ATW62304.1 MG251388_p51 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 32559 32909
ATW62257.1 MG251388_p4 hypothetical protein phrog_3108 unknown function unknown function 1 2966 3439
ATW62314.1 MG251388_p61 hypothetical protein phrog_329 minor tail protein tail 1 38849 39250
ATW62287.1 MG251388_p34 hypothetical protein phrog_3910 transcriptional regulator transcription regulation 1 19589 20053
ATW62280.1 MG251388_p27 hypothetical protein singleton unknown function unknown function 1 16542 16733
ATW62313.1 MG251388_p60 hypothetical protein phrog_396 minor tail protein tail 1 38361 38849