Genomic map of Synechococcus phage S-LBS1 (MG271909)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG271909
Definition
Synechococcus phage S-LBS1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
34641
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
60.21
Number of singletons
20
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATS93175.1 MG271909_p3 hypothetical protein phrog_5774 head-tail joining connector 1 2520 3095
ATS93179.1 MG271909_p7 hypothetical protein phrog_5707 unknown function unknown function 1 6735 7124
ATS93187.1 MG271909_p15 minor tail protein U phrog_4204 tail terminator connector 1 11498 11926
ATS93190.1 MG271909_p18 ATPase component of the ABC-type cobalamin/Fe3+-siderophores transport system phrog_569 tail length tape measure protein tail 1 13023 13403
ATS93215.1 MG271909_p43 single-strand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 25633 26076
ATS93198.1 MG271909_p26 minor tail protein phrog_15525 minor tail protein tail 1 19311 19751
ATS93220.1 MG271909_p48 hypothetical protein singleton unknown function unknown function -1 29377 29535
ATS93211.1 MG271909_p39 hypothetical protein phrog_10675 unknown function unknown function 1 24448 24906
ATS93200.1 MG271909_p28 signal peptide protein singleton unknown function unknown function 1 20009 20170
ATS93209.1 MG271909_p37 signal peptide protein singleton unknown function unknown function 1 24111 24245
ATS93217.1 MG271909_p45 VRR-NUC domain-containing protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 27010 27354
ATS93216.1 MG271909_p44 DNA single-strand annealing protein phrog_561 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 26105 26974
ATS93197.1 MG271909_p25 hypothetical protein phrog_644 unknown function unknown function 1 18895 19311
ATS93205.1 MG271909_p33 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation -1 21999 22952
ATS93218.1 MG271909_p46 hypothetical protein singleton unknown function unknown function -1 27363 27998
ATS93193.1 MG271909_p21 tail tape measure protein phrog_3981 tail length tape measure protein tail 1 13744 15498
ATS93214.1 MG271909_p42 rotamase singleton unknown function unknown function -1 25373 25633
ATS93180.1 MG271909_p8 hypothetical protein phrog_24448 unknown function unknown function 1 7124 7459
ATS93173.1 MG271909_p1 terminase small subunit phrog_57 terminase small subunit head and packaging 1 1 606
ATS93207.1 MG271909_p35 hypothetical protein singleton unknown function unknown function 1 23579 23908
ATS93178.1 MG271909_p6 hypothetical protein singleton unknown function unknown function 1 6531 6731
ATS93219.1 MG271909_p47 superfamily II DNA or RNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 27995 29380
ATS93199.1 MG271909_p27 signal peptide protein singleton unknown function unknown function 1 19788 19967
ATS93195.1 MG271909_p23 tail protein phrog_27845 tail protein tail 1 15956 18178
ATS93174.1 MG271909_p2 terminase large subunit phrog_15 terminase large subunit head and packaging 1 603 2504
ATS93208.1 MG271909_p36 hypothetical protein singleton unknown function unknown function 1 23912 24061
ATS93181.1 MG271909_p9 hypothetical protein phrog_24754 tail fiber protein tail 1 7484 8026
ATS93192.1 MG271909_p20 hypothetical protein singleton unknown function unknown function 1 13601 13744
ATS93194.1 MG271909_p22 minor tail protein phrog_25799 unknown function unknown function 1 15498 15959
ATS93204.1 MG271909_p32 hypothetical protein singleton unknown function unknown function 1 21726 22022
ATS93183.1 MG271909_p11 tail fiber protein phrog_9942 tail fiber protein tail 1 8292 9998
ATS93203.1 MG271909_p31 hypothetical protein singleton unknown function unknown function -1 21545 21727
ATS93222.1 MG271909_p50 superfamily II DNA or RNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 30425 31804
ATS93212.1 MG271909_p40 hypothetical protein singleton unknown function unknown function -1 24889 25197
ATS93176.1 MG271909_p4 portal protein phrog_21 portal protein head and packaging 1 3092 4621
ATS93188.1 MG271909_p16 hypothetical protein singleton unknown function unknown function 1 12017 12130
ATS93185.1 MG271909_p13 hypothetical protein phrog_7802 unknown function unknown function 1 10936 11298
ATS93186.1 MG271909_p14 hypothetical protein singleton unknown function unknown function -1 11295 11441
ATS93196.1 MG271909_p24 hypothetical protein phrog_15525 minor tail protein tail 1 18318 18869
ATS93189.1 MG271909_p17 hypothetical protein phrog_290 minor tail protein tail 1 12090 13019
ATS93201.1 MG271909_p29 hypothetical protein singleton unknown function unknown function 1 20167 20448
ATS93182.1 MG271909_p10 hypothetical protein phrog_26903 unknown function unknown function 1 8102 8287
ATS93213.1 MG271909_p41 hypothetical protein singleton unknown function unknown function -1 25194 25376
ATS93184.1 MG271909_p12 integrase phrog_1 integrase integration and excision 1 10085 10939
ATS93210.1 MG271909_p38 hypothetical protein phrog_17722 unknown function unknown function 1 24242 24451
ATS93202.1 MG271909_p30 lysozyme phrog_28234 endolysin lysis 1 20445 21551
ATS93191.1 MG271909_p19 hypothetical protein singleton unknown function unknown function -1 13364 13537
ATS93224.1 MG271909_p52 bifunctional DNA primase and polymerase singleton unknown function unknown function 1 32041 34236
ATS93177.1 MG271909_p5 major capsid protein phrog_617 major head protein head and packaging 1 4621 6516
ATS93206.1 MG271909_p34 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 23040 23582
ATS93223.1 MG271909_p51 hypothetical protein singleton unknown function unknown function 1 31899 32078
ATS93221.1 MG271909_p49 DNA modification methylase phrog_67 DNA methyltransferase other -1 29532 30428