| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG271909 |
Definition |
Synechococcus phage S-LBS1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
34641 |
Host Name |
Synechococcus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
60.21 |
Number of singletons |
20 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATS93175.1 | MG271909_p3 | hypothetical protein | phrog_5774 | head-tail joining | connector | 1 | 2520 | 3095 |
| ATS93179.1 | MG271909_p7 | hypothetical protein | phrog_5707 | unknown function | unknown function | 1 | 6735 | 7124 |
| ATS93187.1 | MG271909_p15 | minor tail protein U | phrog_4204 | tail terminator | connector | 1 | 11498 | 11926 |
| ATS93190.1 | MG271909_p18 | ATPase component of the ABC-type cobalamin/Fe3+-siderophores transport system | phrog_569 | tail length tape measure protein | tail | 1 | 13023 | 13403 |
| ATS93215.1 | MG271909_p43 | single-strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25633 | 26076 |
| ATS93198.1 | MG271909_p26 | minor tail protein | phrog_15525 | minor tail protein | tail | 1 | 19311 | 19751 |
| ATS93220.1 | MG271909_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29377 | 29535 |
| ATS93211.1 | MG271909_p39 | hypothetical protein | phrog_10675 | unknown function | unknown function | 1 | 24448 | 24906 |
| ATS93200.1 | MG271909_p28 | signal peptide protein | singleton | unknown function | unknown function | 1 | 20009 | 20170 |
| ATS93209.1 | MG271909_p37 | signal peptide protein | singleton | unknown function | unknown function | 1 | 24111 | 24245 |
| ATS93217.1 | MG271909_p45 | VRR-NUC domain-containing protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27010 | 27354 |
| ATS93216.1 | MG271909_p44 | DNA single-strand annealing protein | phrog_561 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 26105 | 26974 |
| ATS93197.1 | MG271909_p25 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 18895 | 19311 |
| ATS93205.1 | MG271909_p33 | RNA polymerase sigma factor | phrog_351 | RNA polymerase sigma factor | transcription regulation | -1 | 21999 | 22952 |
| ATS93218.1 | MG271909_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27363 | 27998 |
| ATS93193.1 | MG271909_p21 | tail tape measure protein | phrog_3981 | tail length tape measure protein | tail | 1 | 13744 | 15498 |
| ATS93214.1 | MG271909_p42 | rotamase | singleton | unknown function | unknown function | -1 | 25373 | 25633 |
| ATS93180.1 | MG271909_p8 | hypothetical protein | phrog_24448 | unknown function | unknown function | 1 | 7124 | 7459 |
| ATS93173.1 | MG271909_p1 | terminase small subunit | phrog_57 | terminase small subunit | head and packaging | 1 | 1 | 606 |
| ATS93207.1 | MG271909_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23579 | 23908 |
| ATS93178.1 | MG271909_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6531 | 6731 |
| ATS93219.1 | MG271909_p47 | superfamily II DNA or RNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 27995 | 29380 |
| ATS93199.1 | MG271909_p27 | signal peptide protein | singleton | unknown function | unknown function | 1 | 19788 | 19967 |
| ATS93195.1 | MG271909_p23 | tail protein | phrog_27845 | tail protein | tail | 1 | 15956 | 18178 |
| ATS93174.1 | MG271909_p2 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 603 | 2504 |
| ATS93208.1 | MG271909_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23912 | 24061 |
| ATS93181.1 | MG271909_p9 | hypothetical protein | phrog_24754 | tail fiber protein | tail | 1 | 7484 | 8026 |
| ATS93192.1 | MG271909_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13601 | 13744 |
| ATS93194.1 | MG271909_p22 | minor tail protein | phrog_25799 | unknown function | unknown function | 1 | 15498 | 15959 |
| ATS93204.1 | MG271909_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21726 | 22022 |
| ATS93183.1 | MG271909_p11 | tail fiber protein | phrog_9942 | tail fiber protein | tail | 1 | 8292 | 9998 |
| ATS93203.1 | MG271909_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21545 | 21727 |
| ATS93222.1 | MG271909_p50 | superfamily II DNA or RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 30425 | 31804 |
| ATS93212.1 | MG271909_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24889 | 25197 |
| ATS93176.1 | MG271909_p4 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 3092 | 4621 |
| ATS93188.1 | MG271909_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12017 | 12130 |
| ATS93185.1 | MG271909_p13 | hypothetical protein | phrog_7802 | unknown function | unknown function | 1 | 10936 | 11298 |
| ATS93186.1 | MG271909_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11295 | 11441 |
| ATS93196.1 | MG271909_p24 | hypothetical protein | phrog_15525 | minor tail protein | tail | 1 | 18318 | 18869 |
| ATS93189.1 | MG271909_p17 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 12090 | 13019 |
| ATS93201.1 | MG271909_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20167 | 20448 |
| ATS93182.1 | MG271909_p10 | hypothetical protein | phrog_26903 | unknown function | unknown function | 1 | 8102 | 8287 |
| ATS93213.1 | MG271909_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25194 | 25376 |
| ATS93184.1 | MG271909_p12 | integrase | phrog_1 | integrase | integration and excision | 1 | 10085 | 10939 |
| ATS93210.1 | MG271909_p38 | hypothetical protein | phrog_17722 | unknown function | unknown function | 1 | 24242 | 24451 |
| ATS93202.1 | MG271909_p30 | lysozyme | phrog_28234 | endolysin | lysis | 1 | 20445 | 21551 |
| ATS93191.1 | MG271909_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13364 | 13537 |
| ATS93224.1 | MG271909_p52 | bifunctional DNA primase and polymerase | singleton | unknown function | unknown function | 1 | 32041 | 34236 |
| ATS93177.1 | MG271909_p5 | major capsid protein | phrog_617 | major head protein | head and packaging | 1 | 4621 | 6516 |
| ATS93206.1 | MG271909_p34 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 23040 | 23582 |
| ATS93223.1 | MG271909_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31899 | 32078 |
| ATS93221.1 | MG271909_p49 | DNA modification methylase | phrog_67 | DNA methyltransferase | other | -1 | 29532 | 30428 |