| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG564297 |
Definition |
Staphylococcus phage UPMK_2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
NUCCORE |
Length |
40955 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
35.39 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUM57570.1 | MG564297_p49 | hypothetical protein | phrog_7919 | unknown function | unknown function | 1 | 32641 | 32952 |
| AUM57537.1 | MG564297_p16 | hypothetical protein | phrog_2027 | unknown function | unknown function | 1 | 5495 | 5731 |
| AUM57547.1 | MG564297_p26 | capsid assembly scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 11564 | 12154 |
| AUM57572.1 | MG564297_p51 | serine recombinase gin | phrog_95 | integrase | integration and excision | -1 | 33469 | 34854 |
| AUM57556.1 | MG564297_p35 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 15941 | 16282 |
| AUM57550.1 | MG564297_p29 | head completion protein | phrog_1161 | head-tail adaptor | connector | 1 | 13325 | 13639 |
| AUM57558.1 | MG564297_p37 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 19269 | 20204 |
| AUM57542.1 | MG564297_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7019 | 7330 |
| AUM57540.1 | MG564297_p19 | transcriptional activator | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 6079 | 6267 |
| AUM57539.1 | MG564297_p18 | hypothetical protein | phrog_3885 | unknown function | unknown function | 1 | 5891 | 6091 |
| AUM57551.1 | MG564297_p30 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 13632 | 13967 |
| AUM57532.1 | MG564297_p11 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 4040 | 4294 |
| AUM57531.1 | MG564297_p10 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 3786 | 4028 |
| AUM57536.1 | MG564297_p15 | dimeric dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 4916 | 5449 |
| AUM57561.1 | MG564297_p40 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 24012 | 25835 |
| AUM57559.1 | MG564297_p38 | peptidase | phrog_663 | minor head protein | head and packaging | 1 | 20215 | 22101 |
| AUM57528.1 | MG564297_p7 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 2819 | 3223 |
| AUM57522.1 | MG564297_p1 | hypothetical protein | phrog_19309 | unknown function | unknown function | 1 | 50 | 169 |
| AUM57543.1 | MG564297_p22 | terminase small subunit | phrog_1595 | terminase small subunit | head and packaging | 1 | 7420 | 7914 |
| AUM57564.1 | MG564297_p43 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 26429 | 26728 |
| AUM57526.1 | MG564297_p5 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 2415 | 2573 |
| AUM57529.1 | MG564297_p8 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 3228 | 3413 |
| AUM57576.1 | MG564297_p55 | repressor protein | phrog_463 | anti-repressor | transcription regulation | 1 | 36872 | 37597 |
| AUM57541.1 | MG564297_p20 | hypothetical protein | phrog_1058 | unknown function | unknown function | 1 | 6268 | 6669 |
| AUM57553.1 | MG564297_p32 | tail completion protein | phrog_176 | tail terminator | connector | 1 | 14380 | 14817 |
| AUM57562.1 | MG564297_p41 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 25835 | 26212 |
| AUM57535.1 | MG564297_p14 | hypothetical protein | phrog_4872 | unknown function | unknown function | 1 | 4740 | 4901 |
| AUM57546.1 | MG564297_p25 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 10486 | 11466 |
| AUM57548.1 | MG564297_p27 | major capsid protein | phrog_544 | major head protein | head and packaging | 1 | 12170 | 12982 |
| AUM57579.1 | MG564297_p58 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 38369 | 38590 |
| AUM57577.1 | MG564297_p56 | hypothetical protein | phrog_5920 | unknown function | unknown function | 1 | 37622 | 37831 |
| AUM57574.1 | MG564297_p53 | peptidase S24 | phrog_4 | transcriptional repressor | transcription regulation | -1 | 35777 | 36496 |
| AUM57534.1 | MG564297_p13 | hypothetical protein | phrog_8718 | unknown function | unknown function | 1 | 4458 | 4739 |
| AUM57565.1 | MG564297_p44 | mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 26865 | 28739 |
| AUM57533.1 | MG564297_p12 | hypothetical protein | phrog_3898 | unknown function | unknown function | 1 | 4284 | 4457 |
| AUM57544.1 | MG564297_p23 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 7907 | 9115 |
| AUM57567.1 | MG564297_p46 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 29930 | 30325 |
| AUM57530.1 | MG564297_p9 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 3414 | 3782 |
| AUM57582.1 | MG564297_p61 | DNA endonuclease I-HmuI | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39642 | 40193 |
| AUM57575.1 | MG564297_p54 | Cro-like represor protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 36638 | 36856 |
| AUM57581.1 | MG564297_p60 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39206 | 39631 |
| AUM57552.1 | MG564297_p31 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 13954 | 14367 |
| AUM57583.1 | MG564297_p62 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 40194 | 40868 |
| AUM57527.1 | MG564297_p6 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 2587 | 2808 |
| AUM57545.1 | MG564297_p24 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 9069 | 10547 |
| AUM57549.1 | MG564297_p28 | transcriptional terminator | phrog_390 | Arc-like repressor | transcription regulation | 1 | 12999 | 13325 |
| AUM57580.1 | MG564297_p59 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 38583 | 39206 |
| AUM57525.1 | MG564297_p4 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 1648 | 2421 |
| AUM57568.1 | MG564297_p47 | holin | phrog_962 | holin | lysis | 1 | 30381 | 30818 |
| AUM57557.1 | MG564297_p36 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 16285 | 19254 |
| AUM57538.1 | MG564297_p17 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 5728 | 5916 |
| AUM57524.1 | MG564297_p3 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 868 | 1638 |
| AUM57555.1 | MG564297_p34 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 15426 | 15920 |
| AUM57554.1 | MG564297_p33 | tail protein | phrog_238 | major tail protein | tail | 1 | 14804 | 15364 |
| AUM57571.1 | MG564297_p50 | hypothetical protein | phrog_7090 | unknown function | unknown function | 1 | 32939 | 33322 |
| AUM57578.1 | MG564297_p57 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 38099 | 38359 |
| AUM57560.1 | MG564297_p39 | minor structural protein | phrog_287 | minor tail protein | tail | 1 | 22114 | 24012 |
| AUM57569.1 | MG564297_p48 | lysin | phrog_635 | endolysin | lysis | 1 | 30799 | 32244 |
| AUM57523.1 | MG564297_p2 | hypothetical protein | phrog_3634 | unknown function | unknown function | -1 | 163 | 813 |
| AUM57573.1 | MG564297_p52 | repressor protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | -1 | 35061 | 35741 |
| AUM57566.1 | MG564297_p45 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 28752 | 29924 |
| AUM57563.1 | MG564297_p42 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 26216 | 26389 |