Genomic map of Staphylococcus phage UPMK_2 (MG564297)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG564297
Definition
Staphylococcus phage UPMK_2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
NUCCORE
Length
40955
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
35.39
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUM57570.1 MG564297_p49 hypothetical protein phrog_7919 unknown function unknown function 1 32641 32952
AUM57537.1 MG564297_p16 hypothetical protein phrog_2027 unknown function unknown function 1 5495 5731
AUM57547.1 MG564297_p26 capsid assembly scaffolding protein phrog_194 head scaffolding protein head and packaging 1 11564 12154
AUM57572.1 MG564297_p51 serine recombinase gin phrog_95 integrase integration and excision -1 33469 34854
AUM57556.1 MG564297_p35 hypothetical protein phrog_1404 tail protein tail 1 15941 16282
AUM57550.1 MG564297_p29 head completion protein phrog_1161 head-tail adaptor connector 1 13325 13639
AUM57558.1 MG564297_p37 tail protein phrog_33 distal tail protein Dit tail 1 19269 20204
AUM57542.1 MG564297_p21 hypothetical protein singleton unknown function unknown function 1 7019 7330
AUM57540.1 MG564297_p19 transcriptional activator phrog_152 RinB-like transcriptional activator transcription regulation 1 6079 6267
AUM57539.1 MG564297_p18 hypothetical protein phrog_3885 unknown function unknown function 1 5891 6091
AUM57551.1 MG564297_p30 head-tail adaptor phrog_25 head closure Hc1 connector 1 13632 13967
AUM57532.1 MG564297_p11 hypothetical protein phrog_266 unknown function unknown function 1 4040 4294
AUM57531.1 MG564297_p10 hypothetical protein phrog_258 virulence associated other 1 3786 4028
AUM57536.1 MG564297_p15 dimeric dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 4916 5449
AUM57561.1 MG564297_p40 hypothetical protein phrog_257 minor tail protein tail 1 24012 25835
AUM57559.1 MG564297_p38 peptidase phrog_663 minor head protein head and packaging 1 20215 22101
AUM57528.1 MG564297_p7 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 2819 3223
AUM57522.1 MG564297_p1 hypothetical protein phrog_19309 unknown function unknown function 1 50 169
AUM57543.1 MG564297_p22 terminase small subunit phrog_1595 terminase small subunit head and packaging 1 7420 7914
AUM57564.1 MG564297_p43 hypothetical protein phrog_276 unknown function unknown function 1 26429 26728
AUM57526.1 MG564297_p5 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 2415 2573
AUM57529.1 MG564297_p8 hypothetical protein phrog_299 unknown function unknown function 1 3228 3413
AUM57576.1 MG564297_p55 repressor protein phrog_463 anti-repressor transcription regulation 1 36872 37597
AUM57541.1 MG564297_p20 hypothetical protein phrog_1058 unknown function unknown function 1 6268 6669
AUM57553.1 MG564297_p32 tail completion protein phrog_176 tail terminator connector 1 14380 14817
AUM57562.1 MG564297_p41 hypothetical protein phrog_300 tail fiber protein tail 1 25835 26212
AUM57535.1 MG564297_p14 hypothetical protein phrog_4872 unknown function unknown function 1 4740 4901
AUM57546.1 MG564297_p25 minor head protein phrog_115 minor head protein head and packaging 1 10486 11466
AUM57548.1 MG564297_p27 major capsid protein phrog_544 major head protein head and packaging 1 12170 12982
AUM57579.1 MG564297_p58 hypothetical protein phrog_946 unknown function unknown function 1 38369 38590
AUM57577.1 MG564297_p56 hypothetical protein phrog_5920 unknown function unknown function 1 37622 37831
AUM57574.1 MG564297_p53 peptidase S24 phrog_4 transcriptional repressor transcription regulation -1 35777 36496
AUM57534.1 MG564297_p13 hypothetical protein phrog_8718 unknown function unknown function 1 4458 4739
AUM57565.1 MG564297_p44 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase phrog_759 tail associated cell-wall hydrolase other 1 26865 28739
AUM57533.1 MG564297_p12 hypothetical protein phrog_3898 unknown function unknown function 1 4284 4457
AUM57544.1 MG564297_p23 terminase large subunit phrog_2 terminase large subunit head and packaging 1 7907 9115
AUM57567.1 MG564297_p46 hypothetical protein phrog_1262 unknown function unknown function 1 29930 30325
AUM57530.1 MG564297_p9 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 3414 3782
AUM57582.1 MG564297_p61 DNA endonuclease I-HmuI phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 39642 40193
AUM57575.1 MG564297_p54 Cro-like represor protein phrog_3 transcriptional repressor transcription regulation 1 36638 36856
AUM57581.1 MG564297_p60 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 39206 39631
AUM57552.1 MG564297_p31 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 13954 14367
AUM57583.1 MG564297_p62 hypothetical protein phrog_398 unknown function unknown function 1 40194 40868
AUM57527.1 MG564297_p6 hypothetical protein phrog_433 unknown function unknown function 1 2587 2808
AUM57545.1 MG564297_p24 portal protein phrog_64 portal protein head and packaging 1 9069 10547
AUM57549.1 MG564297_p28 transcriptional terminator phrog_390 Arc-like repressor transcription regulation 1 12999 13325
AUM57580.1 MG564297_p59 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 38583 39206
AUM57525.1 MG564297_p4 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 1648 2421
AUM57568.1 MG564297_p47 holin phrog_962 holin lysis 1 30381 30818
AUM57557.1 MG564297_p36 tape measure protein phrog_58 tail length tape measure protein tail 1 16285 19254
AUM57538.1 MG564297_p17 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 5728 5916
AUM57524.1 MG564297_p3 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 868 1638
AUM57555.1 MG564297_p34 hypothetical protein phrog_183 tail chaperone protein tail 1 15426 15920
AUM57554.1 MG564297_p33 tail protein phrog_238 major tail protein tail 1 14804 15364
AUM57571.1 MG564297_p50 hypothetical protein phrog_7090 unknown function unknown function 1 32939 33322
AUM57578.1 MG564297_p57 hypothetical protein phrog_401 unknown function unknown function 1 38099 38359
AUM57560.1 MG564297_p39 minor structural protein phrog_287 minor tail protein tail 1 22114 24012
AUM57569.1 MG564297_p48 lysin phrog_635 endolysin lysis 1 30799 32244
AUM57523.1 MG564297_p2 hypothetical protein phrog_3634 unknown function unknown function -1 163 813
AUM57573.1 MG564297_p52 repressor protein phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover -1 35061 35741
AUM57566.1 MG564297_p45 tail fiber protein phrog_1125 tail fiber protein tail 1 28752 29924
AUM57563.1 MG564297_p42 hypothetical protein phrog_134 unknown function unknown function 1 26216 26389