| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG603697 |
Definition |
Vibrio phage Vp_R1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
112127 |
Host Name |
Vibrio parahaemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
147 |
%GC |
40.32 |
Number of singletons |
84 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUG88508.1 | MG603697_p144 | hypothetical protein | singleton | unknown function | unknown function | -1 | 107868 | 108422 |
| AUG88417.1 | MG603697_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22047 | 22268 |
| AUG88477.1 | MG603697_p113 | hypothetical protein | phrog_20917 | unknown function | unknown function | 1 | 71920 | 73158 |
| AUG88467.1 | MG603697_p103 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59775 | 60395 |
| AUG88489.1 | MG603697_p125 | hypothetical protein | phrog_22201 | tail fiber protein | tail | 1 | 86731 | 89031 |
| AUG88420.1 | MG603697_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22790 | 23167 |
| AUG88406.1 | MG603697_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17214 | 17366 |
| AUG88493.1 | MG603697_p129 | hypothetical protein | singleton | unknown function | unknown function | 1 | 91034 | 91453 |
| AUG88503.1 | MG603697_p139 | hypothetical protein | phrog_1740 | RNA polymerase sigma factor | transcription regulation | -1 | 104874 | 105521 |
| AUG88428.1 | MG603697_p64 | hypothetical protein | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | -1 | 25390 | 27642 |
| AUG88422.1 | MG603697_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23757 | 23996 |
| AUG88440.1 | MG603697_p76 | hypothetical protein | phrog_33532 | unknown function | unknown function | -1 | 34637 | 35119 |
| AUG88367.1 | MG603697_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 520 | 912 |
| AUG88371.1 | MG603697_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1580 | 1747 |
| AUG88504.1 | MG603697_p140 | hypothetical protein | phrog_7775 | unknown function | unknown function | -1 | 105544 | 105798 |
| AUG88464.1 | MG603697_p100 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57745 | 58008 |
| AUG88372.1 | MG603697_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1741 | 1950 |
| AUG88419.1 | MG603697_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22569 | 22790 |
| AUG88421.1 | MG603697_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23537 | 23740 |
| AUG88458.1 | MG603697_p94 | hypothetical protein | phrog_16959 | unknown function | unknown function | -1 | 52782 | 53381 |
| AUG88470.1 | MG603697_p106 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 63252 | 63620 |
| AUG88385.1 | MG603697_p21 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 8386 | 9339 |
| AUG88384.1 | MG603697_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8074 | 8262 |
| AUG88457.1 | MG603697_p93 | hypothetical protein | phrog_1843 | unknown function | unknown function | -1 | 51334 | 51861 |
| AUG88453.1 | MG603697_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45823 | 46605 |
| AUG88404.1 | MG603697_p40 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | -1 | 15325 | 16890 |
| AUG88409.1 | MG603697_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17931 | 18113 |
| AUG88459.1 | MG603697_p95 | hypothetical protein | phrog_4518 | unknown function | unknown function | -1 | 53381 | 53950 |
| AUG88402.1 | MG603697_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14793 | 14927 |
| AUG88465.1 | MG603697_p101 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58273 | 58524 |
| AUG88387.1 | MG603697_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9615 | 9842 |
| AUG88398.1 | MG603697_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12986 | 13237 |
| AUG88476.1 | MG603697_p112 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70808 | 71908 |
| AUG88454.1 | MG603697_p90 | hypothetical protein | phrog_17203 | unknown function | unknown function | -1 | 47417 | 49609 |
| AUG88446.1 | MG603697_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40354 | 40833 |
| AUG88373.1 | MG603697_p9 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 1953 | 2345 |
| AUG88461.1 | MG603697_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54459 | 54734 |
| AUG88403.1 | MG603697_p39 | hypothetical protein | phrog_37732 | unknown function | unknown function | -1 | 14966 | 15328 |
| AUG88432.1 | MG603697_p68 | hypothetical protein | phrog_7631 | amidoligase enzyme | other | -1 | 29642 | 30733 |
| AUG88374.1 | MG603697_p10 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2342 | 2461 |
| AUG88383.1 | MG603697_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7947 | 8081 |
| AUG88393.1 | MG603697_p29 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 11260 | 11913 |
| AUG88511.1 | MG603697_p147 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 110532 | 112043 |
| AUG88414.1 | MG603697_p50 | DNA polymerase | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 19393 | 19929 |
| AUG88418.1 | MG603697_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22265 | 22519 |
| AUG88509.1 | MG603697_p145 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 108725 | 109363 |
| AUG88441.1 | MG603697_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35287 | 35550 |
| AUG88501.1 | MG603697_p137 | hypothetical protein | singleton | unknown function | unknown function | -1 | 103219 | 103644 |
| AUG88444.1 | MG603697_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36851 | 37141 |
| AUG88427.1 | MG603697_p63 | hypothetical protein | phrog_2520 | gamma-glutamyl cyclotransferase | moron, auxiliary metabolic gene and host takeover | -1 | 24768 | 25211 |
| AUG88507.1 | MG603697_p143 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 107369 | 107845 |
| AUG88485.1 | MG603697_p121 | hypothetical protein | singleton | unknown function | unknown function | 1 | 79461 | 81665 |
| AUG88377.1 | MG603697_p13 | phosphate starvation-inducible protein | phrog_170 | PhoH-like phosphate starvation-inducible | other | -1 | 3072 | 3821 |
| AUG88448.1 | MG603697_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41669 | 42220 |
| AUG88474.1 | MG603697_p110 | hypothetical protein | phrog_9013 | head scaffolding protein | head and packaging | 1 | 68594 | 69694 |
| AUG88505.1 | MG603697_p141 | hypothetical protein | phrog_6599 | unknown function | unknown function | -1 | 106024 | 106806 |
| AUG88375.1 | MG603697_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2493 | 2693 |
| AUG88500.1 | MG603697_p136 | hypothetical protein | singleton | unknown function | unknown function | -1 | 102800 | 103219 |
| AUG88388.1 | MG603697_p24 | hypothetical protein | phrog_13746 | unknown function | unknown function | -1 | 9842 | 10192 |
| AUG88415.1 | MG603697_p51 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | -1 | 20011 | 21801 |
| AUG88463.1 | MG603697_p99 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56643 | 56948 |
| AUG88405.1 | MG603697_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16951 | 17154 |
| AUG88480.1 | MG603697_p116 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74305 | 74640 |
| AUG88490.1 | MG603697_p126 | hypothetical protein | singleton | unknown function | unknown function | 1 | 89091 | 89504 |
| AUG88411.1 | MG603697_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18439 | 18684 |
| AUG88370.1 | MG603697_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1382 | 1537 |
| AUG88381.1 | MG603697_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7338 | 7814 |
| AUG88456.1 | MG603697_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50454 | 51002 |
| AUG88430.1 | MG603697_p66 | hypothetical protein | phrog_9477 | unknown function | unknown function | -1 | 27786 | 28004 |
| AUG88416.1 | MG603697_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21854 | 22045 |
| AUG88447.1 | MG603697_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41216 | 41569 |
| AUG88445.1 | MG603697_p81 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39914 | 40345 |
| AUG88475.1 | MG603697_p111 | capsid and scaffold protein | phrog_1328 | major head protein | head and packaging | 1 | 69816 | 70745 |
| AUG88486.1 | MG603697_p122 | hypothetical protein | singleton | unknown function | unknown function | 1 | 81740 | 84037 |
| AUG88423.1 | MG603697_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23986 | 24225 |
| AUG88399.1 | MG603697_p35 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 13224 | 13682 |
| AUG88431.1 | MG603697_p67 | hypothetical protein | phrog_4736 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 27997 | 29625 |
| AUG88462.1 | MG603697_p98 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56140 | 56382 |
| AUG88390.1 | MG603697_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10447 | 10719 |
| AUG88496.1 | MG603697_p132 | 3'-phosphatase, 5'-polynucleotide kinase | phrog_415 | polynucleotide kinase | other | -1 | 100463 | 100999 |
| AUG88365.1 | MG603697_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 106 | 357 |
| AUG88380.1 | MG603697_p16 | ribonucleotide reductase of class Ia (aerobic), alpha subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 5557 | 7326 |
| AUG88391.1 | MG603697_p27 | hypothetical protein | phrog_3715 | unknown function | unknown function | -1 | 10768 | 10998 |
| AUG88478.1 | MG603697_p114 | hypothetical protein | phrog_8135 | unknown function | unknown function | 1 | 73172 | 73528 |
| AUG88379.1 | MG603697_p15 | ribonucleotide reductase of class Ia (aerobic), beta subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 4571 | 5512 |
| AUG88389.1 | MG603697_p25 | hypothetical protein | phrog_35252 | unknown function | unknown function | -1 | 10161 | 10460 |
| AUG88376.1 | MG603697_p12 | hypothetical protein | phrog_4590 | unknown function | unknown function | -1 | 2755 | 3060 |
| AUG88455.1 | MG603697_p91 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49625 | 50293 |
| AUG88468.1 | MG603697_p104 | hypothetical protein | phrog_8771 | unknown function | unknown function | 1 | 62427 | 62807 |
| AUG88497.1 | MG603697_p133 | hypothetical protein | singleton | unknown function | unknown function | -1 | 101002 | 101319 |
| AUG88452.1 | MG603697_p88 | hypothetical protein | phrog_200 | lipoprotein | other | -1 | 44650 | 45606 |
| AUG88425.1 | MG603697_p61 | hypothetical protein | phrog_16354 | unknown function | unknown function | -1 | 24355 | 24558 |
| AUG88426.1 | MG603697_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24568 | 24768 |
| AUG88378.1 | MG603697_p14 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 3848 | 4558 |
| AUG88471.1 | MG603697_p107 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63669 | 64595 |
| AUG88413.1 | MG603697_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19202 | 19396 |
| AUG88472.1 | MG603697_p108 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 64655 | 66178 |
| AUG88502.1 | MG603697_p138 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 103797 | 104846 |
| AUG88466.1 | MG603697_p102 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58705 | 59697 |
| AUG88492.1 | MG603697_p128 | hypothetical protein | singleton | unknown function | unknown function | 1 | 90485 | 91024 |
| AUG88469.1 | MG603697_p105 | hypothetical protein | phrog_858 | starvation-inducible transcriptional regulator | transcription regulation | 1 | 62807 | 63238 |
| AUG88483.1 | MG603697_p119 | hypothetical protein | singleton | unknown function | unknown function | 1 | 78386 | 78697 |
| AUG88407.1 | MG603697_p43 | hypothetical protein | phrog_944 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 17359 | 17769 |
| AUG88408.1 | MG603697_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17756 | 17926 |
| AUG88386.1 | MG603697_p22 | hypothetical protein | phrog_14305 | unknown function | unknown function | -1 | 9476 | 9622 |
| AUG88438.1 | MG603697_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34071 | 34265 |
| AUG88449.1 | MG603697_p85 | hypothetical protein | phrog_13306 | unknown function | unknown function | -1 | 42221 | 42454 |
| AUG88369.1 | MG603697_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1212 | 1388 |
| AUG88442.1 | MG603697_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35676 | 36065 |
| AUG88481.1 | MG603697_p117 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74650 | 75474 |
| AUG88429.1 | MG603697_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27653 | 27799 |
| AUG88499.1 | MG603697_p135 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 101970 | 102734 |
| AUG88368.1 | MG603697_p4 | hypothetical protein | phrog_1247 | MazG-like pyrophosphatase | other | -1 | 914 | 1219 |
| AUG88437.1 | MG603697_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33407 | 34045 |
| AUG88400.1 | MG603697_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13675 | 13947 |
| AUG88436.1 | MG603697_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32973 | 33296 |
| AUG88366.1 | MG603697_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 350 | 538 |
| AUG88395.1 | MG603697_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12038 | 12364 |
| AUG88506.1 | MG603697_p142 | hypothetical protein | singleton | unknown function | unknown function | -1 | 107050 | 107358 |
| AUG88484.1 | MG603697_p120 | hypothetical protein | singleton | unknown function | unknown function | 1 | 78832 | 79452 |
| AUG88434.1 | MG603697_p70 | hypothetical protein | phrog_3815 | COOH.NH2 ligase | other | -1 | 31295 | 32035 |
| AUG88473.1 | MG603697_p109 | portal protein | phrog_1216 | portal protein | head and packaging | 1 | 66194 | 68356 |
| AUG88510.1 | MG603697_p146 | hypothetical protein | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 110072 | 110470 |
| AUG88450.1 | MG603697_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42670 | 43191 |
| AUG88435.1 | MG603697_p71 | hypothetical protein | phrog_19161 | unknown function | unknown function | -1 | 32098 | 32970 |
| AUG88424.1 | MG603697_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24206 | 24352 |
| AUG88482.1 | MG603697_p118 | hypothetical protein | phrog_2871 | tail protein | tail | 1 | 75484 | 78393 |
| AUG88487.1 | MG603697_p123 | hypothetical protein | phrog_5795 | tail protein | tail | 1 | 84190 | 84909 |
| AUG88495.1 | MG603697_p131 | MJ0042 family finger-like protein | singleton | unknown function | unknown function | 1 | 93054 | 99698 |
| AUG88488.1 | MG603697_p124 | hypothetical protein | phrog_3287 | virion structural protein | head and packaging | 1 | 84922 | 86718 |
| AUG88401.1 | MG603697_p37 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | -1 | 13991 | 14830 |
| AUG88410.1 | MG603697_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18189 | 18416 |
| AUG88397.1 | MG603697_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12578 | 12973 |
| AUG88460.1 | MG603697_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53950 | 54255 |
| AUG88392.1 | MG603697_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11033 | 11260 |
| AUG88491.1 | MG603697_p127 | hypothetical protein | phrog_4287 | DNA ejection protein | DNA, RNA and nucleotide metabolism | 1 | 89504 | 90475 |
| AUG88479.1 | MG603697_p115 | hypothetical protein | phrog_2524 | unknown function | unknown function | 1 | 73540 | 73884 |
| AUG88396.1 | MG603697_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12324 | 12497 |
| AUG88433.1 | MG603697_p69 | hypothetical protein | phrog_4877 | unknown function | unknown function | -1 | 30690 | 31295 |
| AUG88394.1 | MG603697_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11914 | 12051 |
| AUG88451.1 | MG603697_p87 | hypothetical protein | phrog_11295 | unknown function | unknown function | -1 | 43847 | 44191 |
| AUG88443.1 | MG603697_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36501 | 36842 |
| AUG88412.1 | MG603697_p48 | hypothetical protein | phrog_335 | phosphatase | other | -1 | 18738 | 19184 |
| AUG88494.1 | MG603697_p130 | hypothetical protein | singleton | unknown function | unknown function | 1 | 91440 | 93044 |
| AUG88439.1 | MG603697_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34388 | 34621 |
| AUG88498.1 | MG603697_p134 | hypothetical protein | singleton | unknown function | unknown function | -1 | 101430 | 101813 |
| AUG88382.1 | MG603697_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7807 | 7938 |