| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG641885 |
Definition |
Salmonella phage PMBT28, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
48113 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
58.61 |
Number of singletons |
27 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUZ95554.1 | MG641885_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45700 | 45849 |
| AUZ95519.1 | MG641885_p27 | ATP-dependent DNA helicase | phrog_1967 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 26816 | 28294 |
| AUZ95555.1 | MG641885_p63 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 46048 | 46656 |
| AUZ95546.1 | MG641885_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42281 | 42616 |
| AUZ95507.1 | MG641885_p15 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 12099 | 12692 |
| AUZ95500.1 | MG641885_p8 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 6467 | 6955 |
| AUZ95510.1 | MG641885_p18 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 13681 | 16881 |
| AUZ95513.1 | MG641885_p21 | hypothetical protein | phrog_21866 | primase | DNA, RNA and nucleotide metabolism | 1 | 21129 | 22685 |
| AUZ95542.1 | MG641885_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40880 | 41113 |
| AUZ95509.1 | MG641885_p17 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 13266 | 13679 |
| AUZ95529.1 | MG641885_p37 | hypothetical protein | phrog_1507 | unknown function | unknown function | 1 | 35333 | 35674 |
| AUZ95502.1 | MG641885_p10 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 7304 | 7687 |
| AUZ95494.1 | MG641885_p2 | 62kDa structural protein | phrog_145 | portal protein | head and packaging | 1 | 1479 | 2996 |
| AUZ95534.1 | MG641885_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37410 | 37532 |
| AUZ95498.1 | MG641885_p6 | tail fiber protein | singleton | unknown function | unknown function | 1 | 6094 | 6276 |
| AUZ95556.1 | MG641885_p64 | hypothetical protein | phrog_3108 | unknown function | unknown function | 1 | 46661 | 47158 |
| AUZ95541.1 | MG641885_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40280 | 40483 |
| AUZ95506.1 | MG641885_p14 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 9755 | 12097 |
| AUZ95511.1 | MG641885_p19 | minor tail protein | phrog_9017 | tail fiber protein | tail | 1 | 16891 | 17673 |
| AUZ95505.1 | MG641885_p13 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 9052 | 9483 |
| AUZ95503.1 | MG641885_p11 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 7684 | 8103 |
| AUZ95508.1 | MG641885_p16 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 12689 | 13273 |
| AUZ95512.1 | MG641885_p20 | tail fibers protein | phrog_2871 | tail protein | tail | 1 | 17674 | 20676 |
| AUZ95504.1 | MG641885_p12 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 8219 | 9040 |
| AUZ95516.1 | MG641885_p24 | hypothetical protein | phrog_2378 | unknown function | unknown function | 1 | 24959 | 25492 |
| AUZ95543.1 | MG641885_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41318 | 41584 |
| AUZ95528.1 | MG641885_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34925 | 35251 |
| AUZ95497.1 | MG641885_p5 | capsid protein | phrog_247 | major head protein | head and packaging | 1 | 4939 | 6033 |
| AUZ95535.1 | MG641885_p43 | hypothetical protein | phrog_14517 | unknown function | unknown function | 1 | 37535 | 38338 |
| AUZ95551.1 | MG641885_p59 | hypothetical protein | phrog_421 | unknown function | unknown function | 1 | 44324 | 45037 |
| AUZ95538.1 | MG641885_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39093 | 39536 |
| AUZ95514.1 | MG641885_p22 | superfamily II DNA/RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 22687 | 24522 |
| AUZ95533.1 | MG641885_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36968 | 37399 |
| AUZ95539.1 | MG641885_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39524 | 39988 |
| AUZ95558.1 | MG641885_p66 | hypothetical protein | phrog_5975 | unknown function | unknown function | 1 | 47499 | 47969 |
| AUZ95521.1 | MG641885_p29 | DNA-binding protein | phrog_18154 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30248 | 30589 |
| AUZ95496.1 | MG641885_p4 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 4138 | 4929 |
| AUZ95515.1 | MG641885_p23 | hypothetical protein | phrog_5888 | unknown function | unknown function | 1 | 24576 | 24950 |
| AUZ95524.1 | MG641885_p32 | hydrolase | phrog_7076 | dATP triphosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 32621 | 33205 |
| AUZ95559.1 | MG641885_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47953 | 48111 |
| AUZ95536.1 | MG641885_p44 | hypothetical protein | phrog_14808 | unknown function | unknown function | 1 | 38387 | 38698 |
| AUZ95552.1 | MG641885_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45117 | 45287 |
| AUZ95557.1 | MG641885_p65 | holin | phrog_785 | holin | lysis | 1 | 47158 | 47499 |
| AUZ95537.1 | MG641885_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38695 | 39096 |
| AUZ95553.1 | MG641885_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45299 | 45703 |
| AUZ95548.1 | MG641885_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42975 | 43214 |
| AUZ95495.1 | MG641885_p3 | hypothetical protein | phrog_241 | head morphogenesis | head and packaging | 1 | 2993 | 4060 |
| AUZ95499.1 | MG641885_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6280 | 6429 |
| AUZ95531.1 | MG641885_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35829 | 36062 |
| AUZ95545.1 | MG641885_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41861 | 42223 |
| AUZ95517.1 | MG641885_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25606 | 25878 |
| AUZ95544.1 | MG641885_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41584 | 41703 |
| AUZ95522.1 | MG641885_p30 | adenylosuccinate synthetase | phrog_1211 | 2-aminooxy adenylosuccinate synthetase | DNA, RNA and nucleotide metabolism | 1 | 30636 | 31739 |
| AUZ95523.1 | MG641885_p31 | nucleotide pyrophosphohydrolase | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 31752 | 32624 |
| AUZ95518.1 | MG641885_p26 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 25987 | 26745 |
| AUZ95530.1 | MG641885_p38 | hypothetical protein | phrog_10979 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 35713 | 35832 |
| AUZ95547.1 | MG641885_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42694 | 42975 |
| AUZ95526.1 | MG641885_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33593 | 33922 |
| AUZ95501.1 | MG641885_p9 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 6957 | 7307 |
| AUZ95549.1 | MG641885_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43214 | 43540 |
| AUZ95550.1 | MG641885_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44010 | 44300 |
| AUZ95520.1 | MG641885_p28 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 28294 | 30171 |
| AUZ95532.1 | MG641885_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36043 | 36894 |
| AUZ95527.1 | MG641885_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34011 | 34928 |
| AUZ95540.1 | MG641885_p48 | hypothetical protein | phrog_20478 | unknown function | unknown function | 1 | 39969 | 40283 |
| AUZ95493.1 | MG641885_p1 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1 | 1470 |
| AUZ95525.1 | MG641885_p33 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 33198 | 33623 |