| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG708274 |
Definition |
Streptococcus phage vB_SthS_VA214, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus; Viruses. |
DB of origin |
NUCCORE |
Length |
38253 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
38.22 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUN43390.1 | MG708274_p38 | tail length tape-measure protein | phrog_167 | tail length tape measure protein | tail | -1 | 23818 | 28596 |
| AUN43375.1 | MG708274_p23 | hypothetical protein | phrog_11483 | unknown function | unknown function | -1 | 11301 | 11489 |
| AUN43380.1 | MG708274_p28 | lysin | phrog_4238 | endolysin | lysis | -1 | 13501 | 13728 |
| AUN43381.1 | MG708274_p29 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 13790 | 14551 |
| AUN43393.1 | MG708274_p41 | tail assembly protein | phrog_1217 | tail protein | tail | -1 | 29870 | 30241 |
| AUN43374.1 | MG708274_p22 | hypothetical protein | phrog_2277 | unknown function | unknown function | -1 | 11079 | 11255 |
| AUN43388.1 | MG708274_p36 | capsid and scaffold protein | phrog_588 | tail fiber protein and host specificity | tail | -1 | 18537 | 22256 |
| AUN43367.1 | MG708274_p15 | DNA helicase loader | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | -1 | 6819 | 7601 |
| AUN43405.1 | MG708274_p53 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | -1 | 37789 | 38187 |
| AUN43384.1 | MG708274_p32 | hypothetical protein | phrog_1296 | holin | lysis | -1 | 15613 | 15936 |
| AUN43359.1 | MG708274_p7 | hypothetical protein | phrog_1489 | unknown function | unknown function | -1 | 2940 | 3095 |
| AUN43392.1 | MG708274_p40 | major tail protein | phrog_88 | major tail protein | tail | -1 | 29240 | 29851 |
| AUN43404.1 | MG708274_p52 | homing endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 37172 | 37678 |
| AUN43377.1 | MG708274_p25 | hypothetical protein | phrog_4964 | unknown function | unknown function | -1 | 11792 | 12343 |
| AUN43398.1 | MG708274_p46 | Clp protease-like protein | phrog_94 | head maturation protease | head and packaging | -1 | 32559 | 33224 |
| AUN43376.1 | MG708274_p24 | hypothetical protein | phrog_16094 | unknown function | unknown function | -1 | 11515 | 11766 |
| AUN43403.1 | MG708274_p51 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | -1 | 36531 | 36992 |
| AUN43391.1 | MG708274_p39 | tail assembly protein | phrog_1346 | tail protein | tail | -1 | 28814 | 29167 |
| AUN43389.1 | MG708274_p37 | tail fibers protein | phrog_202 | distal tail protein Dit | tail | -1 | 22256 | 23821 |
| AUN43383.1 | MG708274_p31 | holin | phrog_297 | holin | lysis | -1 | 15362 | 15604 |
| AUN43369.1 | MG708274_p17 | hypothetical protein | phrog_1022 | unknown function | unknown function | -1 | 8674 | 8817 |
| AUN43402.1 | MG708274_p50 | terminase large subunit | phrog_4914 | terminase large subunit | head and packaging | -1 | 35761 | 36450 |
| AUN43356.1 | MG708274_p4 | DNA-binding protein | phrog_1994 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 1694 | 2206 |
| AUN43370.1 | MG708274_p18 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 8850 | 9059 |
| AUN43361.1 | MG708274_p9 | hypothetical protein | phrog_1982 | unknown function | unknown function | -1 | 3744 | 3980 |
| AUN43371.1 | MG708274_p19 | antirepressor protein | phrog_2902 | anti-repressor | transcription regulation | -1 | 9186 | 9719 |
| AUN43387.1 | MG708274_p35 | capsid and scaffold protein | phrog_372 | tail protein | tail | -1 | 16515 | 18536 |
| AUN43379.1 | MG708274_p27 | hypothetical protein | phrog_8487 | unknown function | unknown function | -1 | 12687 | 13022 |
| AUN43366.1 | MG708274_p14 | hypothetical protein | phrog_3159 | unknown function | unknown function | -1 | 6636 | 6818 |
| AUN43396.1 | MG708274_p44 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 31018 | 31335 |
| AUN43378.1 | MG708274_p26 | hypothetical protein | phrog_13146 | unknown function | unknown function | -1 | 12371 | 12661 |
| AUN43360.1 | MG708274_p8 | hypothetical protein | phrog_121 | unknown function | unknown function | -1 | 3144 | 3731 |
| AUN43382.1 | MG708274_p30 | lysin | phrog_998 | endolysin | lysis | -1 | 14758 | 15360 |
| AUN43358.1 | MG708274_p6 | hypothetical protein | phrog_13248 | unknown function | unknown function | -1 | 2748 | 2939 |
| AUN43364.1 | MG708274_p12 | hypothetical protein | phrog_674 | unknown function | unknown function | -1 | 4903 | 5874 |
| AUN43357.1 | MG708274_p5 | hypothetical protein | phrog_121 | unknown function | unknown function | -1 | 2207 | 2701 |
| AUN43385.1 | MG708274_p33 | hypothetical protein | phrog_1567 | unknown function | unknown function | -1 | 15952 | 16098 |
| AUN43400.1 | MG708274_p48 | capsid and scaffold protein | phrog_1142 | unknown function | unknown function | -1 | 34386 | 34565 |
| AUN43363.1 | MG708274_p11 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 4448 | 4906 |
| AUN43395.1 | MG708274_p43 | capsid and scaffold protein | phrog_25 | head closure Hc1 | connector | -1 | 30675 | 31025 |
| AUN43365.1 | MG708274_p13 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 5877 | 6509 |
| AUN43386.1 | MG708274_p34 | hypothetical protein | phrog_1060 | unknown function | unknown function | -1 | 16105 | 16500 |
| AUN43372.1 | MG708274_p20 | hypothetical protein | phrog_1733 | unknown function | unknown function | -1 | 9712 | 10656 |
| AUN43394.1 | MG708274_p42 | tail assembly protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 30246 | 30668 |
| AUN43401.1 | MG708274_p49 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | -1 | 34569 | 35606 |
| AUN43373.1 | MG708274_p21 | cro-like protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 10697 | 10900 |
| AUN43354.1 | MG708274_p2 | hypothetical protein | phrog_98 | unknown function | unknown function | -1 | 1007 | 1420 |
| AUN43368.1 | MG708274_p16 | replication initiation protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | -1 | 7613 | 8458 |
| AUN43397.1 | MG708274_p45 | capsid protein | phrog_10 | major head protein | head and packaging | -1 | 31350 | 32543 |
| AUN43353.1 | MG708274_p1 | hypothetical protein | phrog_1814 | unknown function | unknown function | -1 | 298 | 1005 |
| AUN43362.1 | MG708274_p10 | holliday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 3980 | 4438 |
| AUN43399.1 | MG708274_p47 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 33211 | 34368 |
| AUN43355.1 | MG708274_p3 | hypothetical protein | phrog_884 | unknown function | unknown function | -1 | 1417 | 1704 |