Genomic map of Streptococcus phage vB_SthS_VA460 (MG708275)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG708275
Definition
Streptococcus phage vB_SthS_VA460, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus.
DB of origin
NUCCORE
Length
41169
Host Name
Streptococcus thermophilus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
38.75
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUN43424.1 MG708275_p19 hypothetical protein phrog_884 unknown function unknown function -1 12563 12766
AUN43446.1 MG708275_p41 endonuclease phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism -1 23587 24348
AUN43415.1 MG708275_p10 terminase large subunit phrog_9 terminase large subunit head and packaging -1 5900 7771
AUN43434.1 MG708275_p29 single-stranded DNA-binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 17549 18004
AUN43455.1 MG708275_p50 capsid and scaffold protein phrog_372 tail protein tail -1 28448 30511
AUN43451.1 MG708275_p46 holin phrog_297 holin lysis -1 27319 27549
AUN43456.1 MG708275_p51 tail assembly protein phrog_588 tail fiber protein and host specificity tail -1 30511 33960
AUN43432.1 MG708275_p27 DNA primase/helicase phrog_864 DNA primase DNA, RNA and nucleotide metabolism -1 15233 16744
AUN43423.1 MG708275_p18 YopX superfamily protein phrog_98 unknown function unknown function -1 12150 12560
AUN43459.1 MG708275_p54 hypothetical protein phrog_2629 unknown function unknown function -1 40233 40376
AUN43448.1 MG708275_p43 hypothetical protein singleton unknown function unknown function -1 25237 26526
AUN43414.1 MG708275_p9 capsid and scaffold protein phrog_1142 unknown function unknown function -1 5711 5896
AUN43419.1 MG708275_p14 homing endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism -1 9607 10125
AUN43431.1 MG708275_p26 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 14643 14966
AUN43443.1 MG708275_p38 hypothetical protein phrog_4964 unknown function unknown function -1 21982 22533
AUN43421.1 MG708275_p16 terminase large subunit singleton unknown function unknown function -1 10782 11144
AUN43422.1 MG708275_p17 hypothetical protein phrog_1814 unknown function unknown function -1 11429 12136
AUN43436.1 MG708275_p31 NTP-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 19305 20006
AUN43427.1 MG708275_p22 hypothetical protein singleton unknown function unknown function -1 13690 14031
AUN43444.1 MG708275_p39 hypothetical protein phrog_12732 unknown function unknown function -1 22555 22899
AUN43458.1 MG708275_p53 tail length tape-measure protein phrog_167 tail length tape measure protein tail -1 35513 40204
AUN43445.1 MG708275_p40 lysin phrog_4238 endolysin lysis -1 23298 23525
AUN43461.1 MG708275_p56 major tail protein singleton unknown function unknown function -1 40843 41118
AUN43406.1 MG708275_p1 tail assembly protein phrog_1217 tail protein tail -1 307 678
AUN43440.1 MG708275_p35 hypothetical protein singleton unknown function unknown function -1 21096 21218
AUN43426.1 MG708275_p21 hypothetical protein phrog_1174 unknown function unknown function -1 13481 13693
AUN43411.1 MG708275_p6 Clp protease-like protein phrog_94 head maturation protease head and packaging -1 2997 3665
AUN43412.1 MG708275_p7 portal protein phrog_12 portal protein head and packaging -1 3652 4812
AUN43439.1 MG708275_p34 hypothetical protein phrog_1022 unknown function unknown function -1 20965 21099
AUN43442.1 MG708275_p37 hypothetical protein phrog_11483 unknown function unknown function -1 21695 21910
AUN43425.1 MG708275_p20 DNA-binding protein phrog_1994 DNA binding protein DNA, RNA and nucleotide metabolism -1 12786 13475
AUN43420.1 MG708275_p15 hypothetical protein phrog_36 transcriptional regulator transcription regulation -1 10236 10634
AUN43418.1 MG708275_p13 terminase small subunit phrog_83 terminase small subunit head and packaging -1 8964 9425
AUN43416.1 MG708275_p11 hypothetical protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism -1 7802 8734
AUN43460.1 MG708275_p55 tail assembly protein phrog_1346 tail protein tail -1 40424 40777
AUN43413.1 MG708275_p8 hypothetical protein phrog_56 DNA methyltransferase other -1 4794 5714
AUN43438.1 MG708275_p33 hypothetical protein phrog_14808 unknown function unknown function -1 20516 20731
AUN43433.1 MG708275_p28 replication protein phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism -1 16731 17546
AUN43409.1 MG708275_p4 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector -1 1462 1776
AUN43410.1 MG708275_p5 capsid protein phrog_10 major head protein head and packaging -1 1791 2981
AUN43452.1 MG708275_p47 hypothetical protein phrog_1296 holin lysis -1 27557 27880
AUN43450.1 MG708275_p45 hypothetical protein phrog_6487 unknown function unknown function -1 26864 27316
AUN43407.1 MG708275_p2 tail assembly protein phrog_5 tail completion or Neck1 protein connector -1 683 1105
AUN43417.1 MG708275_p12 hypothetical protein phrog_3180 Arc-like repressor transcription regulation 1 8821 8952
AUN43441.1 MG708275_p36 cro-like protein phrog_3 transcriptional repressor transcription regulation -1 21259 21462
AUN43454.1 MG708275_p49 hypothetical protein phrog_1060 unknown function unknown function -1 28067 28408
AUN43408.1 MG708275_p3 capsid and scaffold protein phrog_25 head closure Hc1 connector -1 1112 1462
AUN43447.1 MG708275_p42 lysin phrog_998 endolysin lysis -1 24554 25156
AUN43435.1 MG708275_p30 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 18011 19291
AUN43430.1 MG708275_p25 hypothetical protein phrog_1982 unknown function unknown function -1 14384 14638
AUN43429.1 MG708275_p24 hypothetical protein phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 14256 14429
AUN43457.1 MG708275_p52 tail assembly protein phrog_202 distal tail protein Dit tail -1 33960 35516
AUN43453.1 MG708275_p48 hypothetical protein phrog_1567 unknown function unknown function -1 27895 28089
AUN43449.1 MG708275_p44 hypothetical protein phrog_4757 unknown function unknown function -1 26539 26850
AUN43437.1 MG708275_p32 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism -1 20003 20476
AUN43428.1 MG708275_p23 hypothetical protein phrog_1489 unknown function unknown function -1 14098 14259