| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG708275 |
Definition |
Streptococcus phage vB_SthS_VA460, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus. |
DB of origin |
NUCCORE |
Length |
41169 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
38.75 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUN43424.1 | MG708275_p19 | hypothetical protein | phrog_884 | unknown function | unknown function | -1 | 12563 | 12766 |
| AUN43446.1 | MG708275_p41 | endonuclease | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23587 | 24348 |
| AUN43415.1 | MG708275_p10 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | -1 | 5900 | 7771 |
| AUN43434.1 | MG708275_p29 | single-stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 17549 | 18004 |
| AUN43455.1 | MG708275_p50 | capsid and scaffold protein | phrog_372 | tail protein | tail | -1 | 28448 | 30511 |
| AUN43451.1 | MG708275_p46 | holin | phrog_297 | holin | lysis | -1 | 27319 | 27549 |
| AUN43456.1 | MG708275_p51 | tail assembly protein | phrog_588 | tail fiber protein and host specificity | tail | -1 | 30511 | 33960 |
| AUN43432.1 | MG708275_p27 | DNA primase/helicase | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 15233 | 16744 |
| AUN43423.1 | MG708275_p18 | YopX superfamily protein | phrog_98 | unknown function | unknown function | -1 | 12150 | 12560 |
| AUN43459.1 | MG708275_p54 | hypothetical protein | phrog_2629 | unknown function | unknown function | -1 | 40233 | 40376 |
| AUN43448.1 | MG708275_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25237 | 26526 |
| AUN43414.1 | MG708275_p9 | capsid and scaffold protein | phrog_1142 | unknown function | unknown function | -1 | 5711 | 5896 |
| AUN43419.1 | MG708275_p14 | homing endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 9607 | 10125 |
| AUN43431.1 | MG708275_p26 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 14643 | 14966 |
| AUN43443.1 | MG708275_p38 | hypothetical protein | phrog_4964 | unknown function | unknown function | -1 | 21982 | 22533 |
| AUN43421.1 | MG708275_p16 | terminase large subunit | singleton | unknown function | unknown function | -1 | 10782 | 11144 |
| AUN43422.1 | MG708275_p17 | hypothetical protein | phrog_1814 | unknown function | unknown function | -1 | 11429 | 12136 |
| AUN43436.1 | MG708275_p31 | NTP-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 19305 | 20006 |
| AUN43427.1 | MG708275_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13690 | 14031 |
| AUN43444.1 | MG708275_p39 | hypothetical protein | phrog_12732 | unknown function | unknown function | -1 | 22555 | 22899 |
| AUN43458.1 | MG708275_p53 | tail length tape-measure protein | phrog_167 | tail length tape measure protein | tail | -1 | 35513 | 40204 |
| AUN43445.1 | MG708275_p40 | lysin | phrog_4238 | endolysin | lysis | -1 | 23298 | 23525 |
| AUN43461.1 | MG708275_p56 | major tail protein | singleton | unknown function | unknown function | -1 | 40843 | 41118 |
| AUN43406.1 | MG708275_p1 | tail assembly protein | phrog_1217 | tail protein | tail | -1 | 307 | 678 |
| AUN43440.1 | MG708275_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21096 | 21218 |
| AUN43426.1 | MG708275_p21 | hypothetical protein | phrog_1174 | unknown function | unknown function | -1 | 13481 | 13693 |
| AUN43411.1 | MG708275_p6 | Clp protease-like protein | phrog_94 | head maturation protease | head and packaging | -1 | 2997 | 3665 |
| AUN43412.1 | MG708275_p7 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 3652 | 4812 |
| AUN43439.1 | MG708275_p34 | hypothetical protein | phrog_1022 | unknown function | unknown function | -1 | 20965 | 21099 |
| AUN43442.1 | MG708275_p37 | hypothetical protein | phrog_11483 | unknown function | unknown function | -1 | 21695 | 21910 |
| AUN43425.1 | MG708275_p20 | DNA-binding protein | phrog_1994 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 12786 | 13475 |
| AUN43420.1 | MG708275_p15 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | -1 | 10236 | 10634 |
| AUN43418.1 | MG708275_p13 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | -1 | 8964 | 9425 |
| AUN43416.1 | MG708275_p11 | hypothetical protein | phrog_559 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 7802 | 8734 |
| AUN43460.1 | MG708275_p55 | tail assembly protein | phrog_1346 | tail protein | tail | -1 | 40424 | 40777 |
| AUN43413.1 | MG708275_p8 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 4794 | 5714 |
| AUN43438.1 | MG708275_p33 | hypothetical protein | phrog_14808 | unknown function | unknown function | -1 | 20516 | 20731 |
| AUN43433.1 | MG708275_p28 | replication protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 16731 | 17546 |
| AUN43409.1 | MG708275_p4 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 1462 | 1776 |
| AUN43410.1 | MG708275_p5 | capsid protein | phrog_10 | major head protein | head and packaging | -1 | 1791 | 2981 |
| AUN43452.1 | MG708275_p47 | hypothetical protein | phrog_1296 | holin | lysis | -1 | 27557 | 27880 |
| AUN43450.1 | MG708275_p45 | hypothetical protein | phrog_6487 | unknown function | unknown function | -1 | 26864 | 27316 |
| AUN43407.1 | MG708275_p2 | tail assembly protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 683 | 1105 |
| AUN43417.1 | MG708275_p12 | hypothetical protein | phrog_3180 | Arc-like repressor | transcription regulation | 1 | 8821 | 8952 |
| AUN43441.1 | MG708275_p36 | cro-like protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 21259 | 21462 |
| AUN43454.1 | MG708275_p49 | hypothetical protein | phrog_1060 | unknown function | unknown function | -1 | 28067 | 28408 |
| AUN43408.1 | MG708275_p3 | capsid and scaffold protein | phrog_25 | head closure Hc1 | connector | -1 | 1112 | 1462 |
| AUN43447.1 | MG708275_p42 | lysin | phrog_998 | endolysin | lysis | -1 | 24554 | 25156 |
| AUN43435.1 | MG708275_p30 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 18011 | 19291 |
| AUN43430.1 | MG708275_p25 | hypothetical protein | phrog_1982 | unknown function | unknown function | -1 | 14384 | 14638 |
| AUN43429.1 | MG708275_p24 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 14256 | 14429 |
| AUN43457.1 | MG708275_p52 | tail assembly protein | phrog_202 | distal tail protein Dit | tail | -1 | 33960 | 35516 |
| AUN43453.1 | MG708275_p48 | hypothetical protein | phrog_1567 | unknown function | unknown function | -1 | 27895 | 28089 |
| AUN43449.1 | MG708275_p44 | hypothetical protein | phrog_4757 | unknown function | unknown function | -1 | 26539 | 26850 |
| AUN43437.1 | MG708275_p32 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | -1 | 20003 | 20476 |
| AUN43428.1 | MG708275_p23 | hypothetical protein | phrog_1489 | unknown function | unknown function | -1 | 14098 | 14259 |