| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG727699 |
Definition |
Paenibacillus phage Pagassa, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sitaravirus; unclassified Sitaravirus. |
DB of origin |
NUCCORE |
Length |
40035 |
Host Name |
Paenibacillus larvae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
70 |
%GC |
42 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUS03745.1 | MG727699_p61 | NTP pyrophosphohydrolase | phrog_715 | MazG-like pyrophosphatase | other | 1 | 35086 | 35391 |
| AUS03757.1 | MG727699_p30 | pyridine nucleotide-disulfide oxidoreductase | phrog_26658 | unknown function | unknown function | -1 | 19151 | 19384 |
| AUS03700.1 | MG727699_p11 | major tail protein | phrog_1407 | major tail protein | tail | 1 | 6679 | 7116 |
| AUS03754.1 | MG727699_p70 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39643 | 39981 |
| AUS03708.1 | MG727699_p19 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 13819 | 13980 |
| AUS03712.1 | MG727699_p23 | hypothetical protein | phrog_9393 | unknown function | unknown function | 1 | 15250 | 15411 |
| AUS03721.1 | MG727699_p36 | helix-turn-helix domain DNA-binding protein, excisionase family | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 21881 | 22093 |
| AUS03714.1 | MG727699_p26 | hypothetical protein | phrog_3711 | unknown function | unknown function | 1 | 18143 | 18364 |
| AUS03713.1 | MG727699_p25 | toxin-like protein | phrog_18811 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 16100 | 18130 |
| AUS03720.1 | MG727699_p35 | helix-turn-helix domain Cro/C1 family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 21650 | 21880 |
| AUS03734.1 | MG727699_p49 | hypothetical protein | phrog_8406 | unknown function | unknown function | 1 | 27321 | 27584 |
| AUS03738.1 | MG727699_p53 | DNA recombination protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 29583 | 30503 |
| AUS03744.1 | MG727699_p59 | DNA-cytosine methyltransferase | phrog_363 | DNA methyltransferase | other | 1 | 34019 | 35089 |
| AUS03722.1 | MG727699_p37 | hypothetical protein | phrog_13096 | unknown function | unknown function | 1 | 22161 | 22304 |
| AUS03753.1 | MG727699_p69 | transglycosylase | phrog_1315 | unknown function | unknown function | 1 | 39380 | 39646 |
| AUS03728.2 | MG727699_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24916 | 25023 |
| AUS03705.1 | MG727699_p16 | tail protein | phrog_538 | minor tail protein | tail | 1 | 11277 | 12395 |
| AUS03706.1 | MG727699_p17 | tail protein | phrog_5339 | virion structural protein | head and packaging | 1 | 12392 | 13474 |
| AUS03691.1 | MG727699_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 345 | 2069 |
| AUS03692.1 | MG727699_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2066 | 3319 |
| AUS03751.1 | MG727699_p67 | antitoxin | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 37891 | 38313 |
| AUS03690.1 | MG727699_p1 | terminase small subunit | phrog_361 | terminase small subunit | head and packaging | 1 | 50 | 364 |
| AUS03756.1 | MG727699_p32 | hypothetical protein | phrog_21019 | unknown function | unknown function | -1 | 19399 | 19602 |
| AUS03735.1 | MG727699_p50 | hypothetical protein | phrog_8288 | unknown function | unknown function | 1 | 27589 | 27879 |
| AUS03731.1 | MG727699_p46 | antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 25801 | 26583 |
| AUS03718.1 | MG727699_p33 | integrase | phrog_1 | integrase | integration and excision | -1 | 19629 | 20774 |
| AUS03699.1 | MG727699_p10 | tail protein | phrog_176 | tail terminator | connector | 1 | 6282 | 6677 |
| AUS03746.1 | MG727699_p62 | protein YopX | phrog_98 | unknown function | unknown function | 1 | 35429 | 35881 |
| AUS03719.1 | MG727699_p34 | helix-turn-helix domain containing XRE family transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | -1 | 20837 | 21508 |
| AUS03759.1 | MG727699_p60 | DNA-cytosine methyltransferase | phrog_1008 | DNA methyltransferase | other | 1 | 34221 | 34925 |
| AUS03724.1 | MG727699_p39 | hypothetical protein | phrog_26848 | unknown function | unknown function | 1 | 23178 | 23567 |
| AUS03704.1 | MG727699_p15 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 10423 | 11274 |
| AUS03715.1 | MG727699_p27 | YolD-like protein | phrog_8703 | unknown function | unknown function | 1 | 18468 | 18722 |
| AUS03750.1 | MG727699_p66 | transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 37311 | 37751 |
| AUS03709.1 | MG727699_p20 | holin | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 13961 | 14200 |
| AUS03694.1 | MG727699_p5 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4022 | 5152 |
| AUS03755.1 | MG727699_p24 | hypothetical protein | phrog_14009 | unknown function | unknown function | -1 | 15821 | 15946 |
| AUS03739.1 | MG727699_p54 | MBL-fold metallo-hydrolase | phrog_392 | metal-dependent hydrolase | other | 1 | 30516 | 31274 |
| AUS03698.1 | MG727699_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5870 | 6298 |
| AUS03733.1 | MG727699_p48 | hypothetical protein | phrog_14421 | unknown function | unknown function | 1 | 26795 | 27346 |
| AUS03716.1 | MG727699_p28 | hypothetical protein | phrog_6785 | unknown function | unknown function | 1 | 18835 | 19032 |
| AUS03707.1 | MG727699_p18 | hypothetical protein | phrog_6220 | unknown function | unknown function | 1 | 13475 | 13822 |
| AUS03703.1 | MG727699_p14 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 7790 | 10426 |
| AUS03693.1 | MG727699_p4 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 3309 | 4025 |
| AUS03743.1 | MG727699_p58 | hypothetical protein | phrog_6868 | unknown function | unknown function | 1 | 33715 | 34026 |
| AUS03711.1 | MG727699_p22 | holin | phrog_1299 | holin | lysis | 1 | 14878 | 15120 |
| AUS03725.1 | MG727699_p40 | antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 23564 | 24304 |
| AUS03740.1 | MG727699_p55 | hypothetical protein | phrog_7503 | unknown function | unknown function | 1 | 31271 | 31585 |
| AUS03701.1 | MG727699_p12 | hypothetical protein | phrog_7902 | unknown function | unknown function | 1 | 7113 | 7451 |
| AUS03723.1 | MG727699_p38 | antirepressor/restriction endonuclease | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 22333 | 23157 |
| AUS03710.1 | MG727699_p21 | N-acetylmuramoyl-L-alanine amidase | phrog_3088 | amidase | lysis | 1 | 14197 | 14868 |
| AUS03749.1 | MG727699_p65 | hypothetical protein | phrog_5494 | unknown function | unknown function | 1 | 36802 | 37260 |
| AUS03730.1 | MG727699_p45 | transcriptional regulator | phrog_585 | unknown function | unknown function | -1 | 25335 | 25715 |
| AUS03697.1 | MG727699_p8 | head-tail connector complex protein | phrog_25 | head closure Hc1 | connector | 1 | 5547 | 5870 |
| AUS03736.1 | MG727699_p51 | AAA domain ATPase | phrog_1499 | unknown function | unknown function | 1 | 27863 | 29392 |
| AUS03727.1 | MG727699_p42 | hypothetical protein | phrog_10535 | unknown function | unknown function | 1 | 24699 | 24932 |
| AUS03695.1 | MG727699_p6 | hypothetical protein | phrog_6793 | unknown function | unknown function | 1 | 5130 | 5294 |
| AUS03726.1 | MG727699_p41 | hypothetical protein | phrog_13601 | unknown function | unknown function | 1 | 24334 | 24702 |
| AUS03741.1 | MG727699_p56 | primosome component-like protein | phrog_2514 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31600 | 32430 |
| AUS03742.1 | MG727699_p57 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 32390 | 33718 |
| AUS03729.1 | MG727699_p44 | hypothetical protein | phrog_9497 | unknown function | unknown function | 1 | 25104 | 25343 |
| AUS03717.1 | MG727699_p29 | transcriptional regulator | phrog_3502 | unknown function | unknown function | 1 | 19022 | 19279 |
| AUS03732.1 | MG727699_p47 | hypothetical protein | phrog_21057 | unknown function | unknown function | 1 | 26587 | 26808 |
| AUS03747.1 | MG727699_p63 | hypothetical protein | phrog_6998 | unknown function | unknown function | 1 | 35874 | 36089 |
| AUS03748.1 | MG727699_p64 | holliday junction resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 36086 | 36643 |
| AUS03752.1 | MG727699_p68 | toxin | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 38375 | 38590 |
| AUS03696.1 | MG727699_p7 | head-tail connector complex protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5287 | 5550 |
| AUS03702.1 | MG727699_p13 | hypothetical protein | phrog_7848 | unknown function | unknown function | 1 | 7478 | 7732 |
| AUS03737.1 | MG727699_p52 | hypothetical protein | phrog_5189 | unknown function | unknown function | 1 | 29389 | 29586 |
| AUS03758.1 | MG727699_p31 | hypothetical protein | phrog_23531 | unknown function | unknown function | 1 | 19183 | 19329 |