Genomic map of Ralstonia phage RS-USA-M1 (MG747435)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG747435
Definition
Ralstonia phage RS-USA-M1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Aresaunavirus; unclassified Aresaunavirus.
DB of origin
NUCCORE
Length
39309
Host Name
Ralstonia solanacearum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
65.15
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVP40041.1 MG747435_p48 hypothetical protein singleton unknown function unknown function 1 31105 31377
AVP40042.1 MG747435_p49 hypothetical protein phrog_625 unknown function unknown function 1 31374 31664
AVP40027.1 MG747435_p34 hypothetical protein phrog_6521 membrane protein moron, auxiliary metabolic gene and host takeover -1 25776 26531
AVP40032.1 MG747435_p39 hypothetical protein phrog_9850 unknown function unknown function 1 28977 29171
AVP40033.1 MG747435_p40 transcriptional regulator phrog_603 transcriptional regulator transcription regulation 1 29174 29416
AVP40024.1 MG747435_p31 tail protein phrog_76 tail protein tail 1 23261 23683
AVP40031.1 MG747435_p38 hypothetical protein phrog_4113 unknown function unknown function 1 28757 28948
AVP39997.1 MG747435_p4 hypothetical protein phrog_17530 unknown function unknown function 1 1581 2189
AVP40023.1 MG747435_p30 tail protein phrog_28 tail length tape measure protein tail 1 20592 23258
AVP40011.1 MG747435_p18 tail completion protein phrog_26 tail completion or Neck1 protein connector 1 11792 12238
AVP40040.1 MG747435_p47 hypothetical protein singleton unknown function unknown function 1 30887 31108
AVP40028.1 MG747435_p35 IS3 family transposase phrog_157 transposase integration and excision -1 27165 28001
AVP40018.1 MG747435_p25 tail assembly protein phrog_1807 tail fiber protein tail 1 17067 17819
AVP40038.1 MG747435_p45 hypothetical protein phrog_6236 unknown function unknown function 1 30348 30554
AVP40046.1 MG747435_p53 integrase phrog_1 integrase integration and excision 1 35554 36582
AVP40007.1 MG747435_p14 holin family protein phrog_217 holin lysis 1 9750 10064
AVP40006.1 MG747435_p13 hypothetical protein phrog_198 holin lysis 1 9358 9753
AVP40030.1 MG747435_p37 hypothetical protein phrog_3431 Arc-like repressor transcription regulation 1 28527 28730
AVP40021.1 MG747435_p28 major tail tube protein phrog_55 head closure connector 1 19586 20095
AVP40001.1 MG747435_p8 capsid scaffolding protein phrog_73 head scaffolding protein head and packaging 1 5927 6772
AVP40005.1 MG747435_p12 tail protein phrog_46 baseplate hub tail 1 9136 9342
AVP40039.1 MG747435_p46 hypothetical protein singleton unknown function unknown function 1 30574 30885
AVP40029.1 MG747435_p36 IS2 insertion element repressor phrog_151 transposase integration and excision -1 27998 28399
AVP40048.1 MG747435_p55 DUF3800 domain-containing protein singleton unknown function unknown function 1 38192 38962
AVP39996.1 MG747435_p3 hypothetical protein singleton unknown function unknown function 1 1234 1581
AVP40002.1 MG747435_p9 capsid protein phrog_70 major head protein head and packaging 1 6826 7842
AVP39999.1 MG747435_p6 portal protein phrog_68 portal protein head and packaging -1 2899 4005
AVP39998.1 MG747435_p5 hypothetical protein phrog_14863 unknown function unknown function 1 2099 2914
AVP40035.1 MG747435_p42 hypothetical protein phrog_27455 unknown function unknown function 1 29749 29913
AVP40010.1 MG747435_p17 tail protein phrog_65 tail terminator connector 1 11361 11795
AVP40020.1 MG747435_p27 tail sheath protein phrog_23 tail sheath tail 1 18379 19554
AVP40034.1 MG747435_p41 hypothetical protein phrog_24608 unknown function unknown function 1 29519 29752
AVP40043.1 MG747435_p50 hypothetical protein phrog_5629 DNA primase DNA, RNA and nucleotide metabolism 1 31664 34447
AVP40045.1 MG747435_p52 DUF4224 domain-containing protein phrog_4764 excisionase integration and excision 1 35330 35554
AVP40004.1 MG747435_p11 head completion/stabilization protein phrog_71 head-tail adaptor Ad1 connector 1 8657 9136
AVP40009.1 MG747435_p16 signal peptide protein phrog_4952 signal peptide motif other 1 10864 11364
AVP40036.1 MG747435_p43 hypothetical protein phrog_24813 unknown function unknown function 1 29910 30113
AVP40044.1 MG747435_p51 hypothetical protein singleton unknown function unknown function 1 34434 35330
AVP40026.1 MG747435_p33 site-specific DNA-methyltransferase phrog_67 DNA methyltransferase other 1 25078 25860
AVP40003.1 MG747435_p10 terminase small subunit phrog_74 terminase small subunit head and packaging 1 7839 8561
AVP40000.1 MG747435_p7 oxidoreductase phrog_2 terminase large subunit head and packaging -1 4002 5783
AVP39994.1 MG747435_p1 PAAR domain-containing protein phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover 1 350 742
AVP40017.1 MG747435_p24 tail protein phrog_327 tail protein tail 1 15483 17057
AVP40019.1 MG747435_p26 hypothetical protein phrog_1128 enoyl-CoA hydratase/carnithine racemase-like moron, auxiliary metabolic gene and host takeover 1 17816 18280
AVP40016.1 MG747435_p23 tail protein phrog_48 tail protein tail 1 14859 15476
AVP40015.1 MG747435_p22 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 13958 14866
AVP40014.1 MG747435_p20 baseplate assembly protein phrog_11 baseplate spike tail 1 12994 13611
AVP40013.1 MG747435_p21 baseplate assembly protein phrog_43 baseplate wedge subunit tail 1 13608 13955
AVP40047.1 MG747435_p54 ParA family protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 37103 38149
AVP40008.1 MG747435_p15 peptidoglycan-binding protein phrog_1224 endolysin head and packaging 1 10061 10867
AVP39995.1 MG747435_p2 DUF4123 domain-containing protein phrog_24412 unknown function unknown function 1 744 1247
AVP40037.1 MG747435_p44 hypothetical protein phrog_22312 membrane protein moron, auxiliary metabolic gene and host takeover 1 30113 30355
AVP40012.1 MG747435_p19 hypothetical protein singleton unknown function unknown function -1 12300 12722
AVP40022.1 MG747435_p29 tail assembly protein phrog_103 tail protein tail 1 20171 20497
AVP40025.1 MG747435_p32 tail protein phrog_52 tail protein tail 1 23680 24807