| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG757156 |
Definition |
Mycobacterium phage Cuke, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
68869 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
127 |
%GC |
49.08 |
Number of singletons |
70 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVD99636.1 | MG757156_p19 | tail assembly chaperone | phrog_4336 | tail assembly chaperone | tail | 1 | 11044 | 11877 |
| AVD99666.1 | MG757156_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33985 | 34224 |
| AVD99671.1 | MG757156_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36539 | 36721 |
| AVD99660.1 | MG757156_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32126 | 32425 |
| AVD99741.1 | MG757156_p123 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66725 | 66907 |
| AVD99659.1 | MG757156_p41 | hypothetical protein | phrog_6351 | unknown function | unknown function | 1 | 31681 | 32037 |
| AVD99651.1 | MG757156_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28410 | 28880 |
| AVD99736.1 | MG757156_p118 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65009 | 65413 |
| AVD99733.1 | MG757156_p115 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63776 | 64234 |
| AVD99668.1 | MG757156_p50 | hypothetical protein | phrog_1221 | unknown function | unknown function | 1 | 34724 | 35866 |
| AVD99635.1 | MG757156_p17 | major tail protein | phrog_4971 | major tail protein | tail | 1 | 10141 | 10989 |
| AVD99697.1 | MG757156_p79 | hypothetical protein | phrog_16582 | unknown function | unknown function | 1 | 48254 | 48538 |
| AVD99648.1 | MG757156_p30 | membrane protein | singleton | unknown function | unknown function | 1 | 26879 | 27346 |
| AVD99655.1 | MG757156_p37 | hypothetical protein | phrog_8253 | unknown function | unknown function | 1 | 30414 | 30683 |
| AVD99653.1 | MG757156_p35 | hypothetical protein | phrog_2287 | unknown function | unknown function | 1 | 29798 | 30016 |
| AVD99692.1 | MG757156_p74 | exonuclease | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45241 | 46281 |
| AVD99662.1 | MG757156_p44 | hypothetical protein | phrog_9027 | unknown function | unknown function | 1 | 32661 | 32993 |
| AVD99623.1 | MG757156_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3636 | 4034 |
| AVD99639.1 | MG757156_p21 | minor tail protein | phrog_7161 | minor tail protein | tail | 1 | 17673 | 19247 |
| AVD99680.1 | MG757156_p62 | hypothetical protein | phrog_2511 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39133 | 39402 |
| AVD99693.1 | MG757156_p75 | AAA-ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46278 | 47102 |
| AVD99739.1 | MG757156_p121 | hypothetical protein | phrog_1365 | unknown function | unknown function | 1 | 65988 | 66431 |
| AVD99705.1 | MG757156_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53546 | 53746 |
| AVD99642.1 | MG757156_p24 | hypothetical protein | phrog_7598 | unknown function | unknown function | 1 | 23635 | 23970 |
| AVD99698.1 | MG757156_p80 | nucleotide pyrophosphohydrolase | phrog_3301 | pyrophosphatase | other | 1 | 48535 | 49002 |
| AVD99631.1 | MG757156_p13 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8734 | 9114 |
| AVD99675.1 | MG757156_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37827 | 37973 |
| AVD99677.1 | MG757156_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38316 | 38531 |
| AVD99640.1 | MG757156_p22 | minor tail protein | phrog_1885 | minor tail protein | tail | 1 | 19244 | 20422 |
| AVD99664.1 | MG757156_p46 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 33195 | 33455 |
| AVD99646.1 | MG757156_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26155 | 26388 |
| AVD99702.1 | MG757156_p84 | DNA polymerase III (alpha) | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 49679 | 51484 |
| AVD99641.1 | MG757156_p23 | minor tail protein | phrog_7565 | minor tail protein | tail | 1 | 20419 | 23625 |
| AVD99715.1 | MG757156_p97 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 56679 | 56984 |
| AVD99732.1 | MG757156_p114 | hypothetical protein | phrog_5953 | unknown function | unknown function | 1 | 63619 | 63783 |
| AVD99707.1 | MG757156_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53941 | 54351 |
| AVD99667.1 | MG757156_p49 | hypothetical protein | phrog_16434 | unknown function | unknown function | 1 | 34317 | 34526 |
| AVD99726.1 | MG757156_p108 | hypothetical protein | phrog_5460 | unknown function | unknown function | 1 | 62225 | 62581 |
| AVD99620.1 | MG757156_p2 | membrane protein | singleton | unknown function | unknown function | 1 | 1644 | 1874 |
| AVD99709.1 | MG757156_p91 | resolvase | phrog_1981 | unknown function | unknown function | 1 | 54589 | 55197 |
| AVD99685.1 | MG757156_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41466 | 41603 |
| AVD99669.1 | MG757156_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35893 | 36033 |
| AVD99689.1 | MG757156_p71 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42303 | 44156 |
| AVD99716.1 | MG757156_p98 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56984 | 57313 |
| AVD99670.1 | MG757156_p52 | membrane protein | phrog_549 | unknown function | unknown function | 1 | 36064 | 36516 |
| AVD99624.1 | MG757156_p6 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 4018 | 4962 |
| AVD99740.1 | MG757156_p122 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66441 | 66728 |
| AVD99679.1 | MG757156_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38970 | 39143 |
| AVD99684.1 | MG757156_p66 | integrase | singleton | unknown function | unknown function | 1 | 40166 | 40960 |
| AVD99657.1 | MG757156_p39 | hypothetical protein | phrog_3207 | unknown function | unknown function | 1 | 31170 | 31454 |
| AVD99645.1 | MG757156_p27 | holin | phrog_565 | holin | lysis | 1 | 25711 | 26124 |
| AVD99704.1 | MG757156_p86 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52914 | 53546 |
| AVD99722.1 | MG757156_p104 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58723 | 58896 |
| AVD99731.1 | MG757156_p113 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63503 | 63622 |
| AVD99626.1 | MG757156_p8 | hypothetical protein | phrog_5042 | unknown function | unknown function | 1 | 5912 | 6340 |
| AVD99656.1 | MG757156_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30782 | 31069 |
| AVD99738.1 | MG757156_p120 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65780 | 65995 |
| AVD99725.1 | MG757156_p107 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61966 | 62223 |
| AVD99735.1 | MG757156_p117 | hypothetical protein | singleton | unknown function | unknown function | 1 | 64460 | 64945 |
| AVD99710.1 | MG757156_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55184 | 55357 |
| AVD99681.1 | MG757156_p63 | membrane protein | singleton | unknown function | unknown function | 1 | 39403 | 39543 |
| AVD99711.1 | MG757156_p93 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55341 | 55628 |
| AVD99637.1 | MG757156_p18 | tail assembly chaperone | phrog_4336 | tail assembly chaperone | tail | 1 | 11044 | 12181 |
| AVD99650.1 | MG757156_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28246 | 28413 |
| AVD99678.1 | MG757156_p60 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38528 | 38869 |
| AVD99742.1 | MG757156_p124 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66907 | 67071 |
| AVD99723.1 | MG757156_p105 | DNA primase/polymerase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 58893 | 61625 |
| AVD99688.1 | MG757156_p70 | hypothetical protein | phrog_24640 | unknown function | unknown function | 1 | 42065 | 42313 |
| AVD99717.1 | MG757156_p99 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57297 | 57632 |
| AVD99699.1 | MG757156_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49008 | 49178 |
| AVD99673.1 | MG757156_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37434 | 37607 |
| AVD99729.1 | MG757156_p111 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63209 | 63367 |
| AVD99701.1 | MG757156_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49507 | 49686 |
| AVD99665.1 | MG757156_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33557 | 33988 |
| AVD99743.1 | MG757156_p125 | hypothetical protein | phrog_10899 | terminase small subunit | head and packaging | 1 | 67055 | 68323 |
| AVD99625.1 | MG757156_p7 | hypothetical protein | phrog_4866 | head scaffolding protein | head and packaging | 1 | 5103 | 5873 |
| AVD99727.1 | MG757156_p109 | membrane protein | singleton | unknown function | unknown function | 1 | 62391 | 62786 |
| AVD99643.1 | MG757156_p25 | hypothetical protein | phrog_8923 | unknown function | unknown function | 1 | 23983 | 24162 |
| AVD99687.1 | MG757156_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41848 | 42063 |
| AVD99724.1 | MG757156_p106 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61834 | 61962 |
| AVD99632.1 | MG757156_p14 | hypothetical protein | phrog_4995 | unknown function | unknown function | 1 | 9111 | 9524 |
| AVD99721.1 | MG757156_p103 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58302 | 58529 |
| AVD99719.1 | MG757156_p101 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57934 | 58101 |
| AVD99703.1 | MG757156_p85 | DNA polymerase III (alpha) | phrog_11165 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 51481 | 52914 |
| AVD99649.1 | MG757156_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27339 | 28265 |
| AVD99737.1 | MG757156_p119 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65406 | 65780 |
| AVD99734.1 | MG757156_p116 | hypothetical protein | singleton | unknown function | unknown function | 1 | 64227 | 64463 |
| AVD99661.1 | MG757156_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32429 | 32710 |
| AVD99718.1 | MG757156_p100 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57629 | 57937 |
| AVD99674.1 | MG757156_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37604 | 37825 |
| AVD99647.1 | MG757156_p29 | membrane protein | phrog_8515 | unknown function | unknown function | 1 | 26385 | 26882 |
| AVD99713.1 | MG757156_p95 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55890 | 56078 |
| AVD99654.1 | MG757156_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30101 | 30334 |
| AVD99622.1 | MG757156_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3446 | 3631 |
| AVD99627.1 | MG757156_p9 | major capsid protein | phrog_3990 | major head protein | head and packaging | 1 | 6359 | 7591 |
| AVD99700.1 | MG757156_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49175 | 49510 |
| AVD99629.1 | MG757156_p11 | hypothetical protein | phrog_5274 | unknown function | unknown function | 1 | 7988 | 8332 |
| AVD99672.1 | MG757156_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36815 | 37342 |
| AVD99695.1 | MG757156_p77 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 47908 | 48102 |
| AVD99633.1 | MG757156_p15 | hypothetical protein | phrog_14208 | unknown function | unknown function | 1 | 9542 | 9904 |
| AVD99682.1 | MG757156_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39540 | 39677 |
| AVD99696.1 | MG757156_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48099 | 48257 |
| AVD99730.1 | MG757156_p112 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63369 | 63506 |
| AVD99712.1 | MG757156_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55618 | 55887 |
| AVD99621.1 | MG757156_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1876 | 3432 |
| AVD99745.1 | MG757156_p127 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68679 | 68864 |
| AVD99619.1 | MG757156_p1 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1 | 1644 |
| AVD99694.1 | MG757156_p76 | hypothetical protein | phrog_9460 | methyltransferase | other | 1 | 47129 | 47785 |
| AVD99708.1 | MG757156_p90 | hypothetical protein | phrog_18308 | unknown function | unknown function | 1 | 54329 | 54592 |
| AVD99628.1 | MG757156_p10 | hypothetical protein | phrog_5318 | unknown function | unknown function | 1 | 7596 | 7985 |
| AVD99658.1 | MG757156_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31447 | 31581 |
| AVD99691.1 | MG757156_p73 | hypothetical protein | phrog_16368 | methyltransferase | other | 1 | 44539 | 44991 |
| AVD99683.1 | MG757156_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39845 | 40057 |
| AVD99644.1 | MG757156_p26 | lysin A | phrog_26250 | endolysin | lysis | 1 | 24159 | 25718 |
| AVD99630.1 | MG757156_p12 | hypothetical protein | phrog_4904 | unknown function | unknown function | 1 | 8316 | 8744 |
| AVD99634.1 | MG757156_p16 | hypothetical protein | phrog_5278 | unknown function | unknown function | 1 | 9908 | 10144 |
| AVD99714.1 | MG757156_p96 | ssDNA binding protein | phrog_289 | GTP-binding domain | other | 1 | 56091 | 56588 |
| AVD99720.1 | MG757156_p102 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58088 | 58309 |
| AVD99676.1 | MG757156_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38095 | 38319 |
| AVD99663.1 | MG757156_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32986 | 33198 |
| AVD99706.1 | MG757156_p88 | membrane protein | singleton | unknown function | unknown function | 1 | 53743 | 53901 |
| AVD99652.1 | MG757156_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29611 | 29760 |
| AVD99686.1 | MG757156_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41603 | 41851 |
| AVD99638.1 | MG757156_p20 | tape measure protein | phrog_16277 | tail length tape measure protein | tail | 1 | 12188 | 17680 |
| AVD99744.1 | MG757156_p126 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68316 | 68651 |
| AVD99728.1 | MG757156_p110 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62783 | 63148 |
| AVD99690.1 | MG757156_p72 | membrane protein | singleton | unknown function | unknown function | 1 | 44153 | 44482 |