| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG770215 |
Definition |
Gordonia phage Troje, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Emalynvirus; Gordonia virus Troje. |
DB of origin |
NUCCORE |
Length |
45909 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
60.37 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUV60745.1 | MG770215_p39 | hypothetical protein | phrog_10015 | unknown function | unknown function | -1 | 27305 | 27463 |
| AUV60754.1 | MG770215_p49 | hypothetical protein | phrog_27770 | unknown function | unknown function | -1 | 34404 | 34550 |
| AUV60767.1 | MG770215_p62 | hypothetical protein | phrog_19638 | unknown function | unknown function | 1 | 42803 | 43099 |
| AUV60714.1 | MG770215_p8 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5370 | 6326 |
| AUV60746.1 | MG770215_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27467 | 27694 |
| AUV60744.1 | MG770215_p38 | hypothetical protein | phrog_5845 | unknown function | unknown function | -1 | 26913 | 27308 |
| AUV60739.1 | MG770215_p33 | hypothetical protein | phrog_16498 | unknown function | unknown function | -1 | 25266 | 25622 |
| AUV60776.1 | MG770215_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 989 | 1072 |
| AUV60765.1 | MG770215_p60 | DNA recombinase | phrog_3123 | unknown function | unknown function | 1 | 40095 | 42092 |
| AUV60747.1 | MG770215_p41 | hypothetical protein | phrog_14876 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27737 | 28273 |
| AUV60727.1 | MG770215_p21 | lysin A, glycosyl hydrolase domain | phrog_3084 | endolysin | lysis | 1 | 18059 | 19021 |
| AUV60726.1 | MG770215_p20 | lysin A, L-ala-D-glu peptidase domain | phrog_1512 | endolysin | lysis | 1 | 17465 | 18055 |
| AUV60713.1 | MG770215_p7 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 4889 | 5350 |
| AUV60738.1 | MG770215_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24858 | 25142 |
| AUV60750.1 | MG770215_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30463 | 32853 |
| AUV60778.1 | MG770215_p70 | hypothetical protein | phrog_26569 | unknown function | unknown function | 1 | 45034 | 45387 |
| AUV60708.1 | MG770215_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 53 | 535 |
| AUV60749.1 | MG770215_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30155 | 30466 |
| AUV60762.1 | MG770215_p57 | hypothetical protein | phrog_17534 | unknown function | unknown function | -1 | 39255 | 39428 |
| AUV60723.1 | MG770215_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14394 | 15365 |
| AUV60730.1 | MG770215_p24 | hypothetical protein | phrog_20118 | unknown function | unknown function | 1 | 19842 | 20150 |
| AUV60711.1 | MG770215_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2787 | 4241 |
| AUV60728.1 | MG770215_p22 | membrane protein | phrog_3428 | holin | lysis | 1 | 19018 | 19299 |
| AUV60729.1 | MG770215_p23 | membrane protein | phrog_5552 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 19349 | 19837 |
| AUV60717.1 | MG770215_p11 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 7235 | 7504 |
| AUV60725.1 | MG770215_p19 | minor tail protein | phrog_8122 | minor tail protein | tail | 1 | 17070 | 17468 |
| AUV60761.1 | MG770215_p56 | hypothetical protein | phrog_24818 | unknown function | unknown function | -1 | 38983 | 39255 |
| AUV60758.1 | MG770215_p53 | nucleotide pyrophosphohydrolase | phrog_12184 | nucleotide pyrophosphohydrolase | other | -1 | 36547 | 37002 |
| AUV60736.1 | MG770215_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23741 | 24073 |
| AUV60712.1 | MG770215_p6 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 4216 | 4839 |
| AUV60715.1 | MG770215_p9 | head-to-tail connector complex protein | phrog_1290 | head-tail adaptor | connector | 1 | 6392 | 6904 |
| AUV60734.1 | MG770215_p28 | hypothetical protein | phrog_9930 | unknown function | unknown function | 1 | 22571 | 23077 |
| AUV60718.1 | MG770215_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 7491 | 7901 |
| AUV60732.1 | MG770215_p26 | hypothetical protein | phrog_1126 | unknown function | unknown function | 1 | 21258 | 21599 |
| AUV60775.1 | MG770215_p71 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45614 | 45889 |
| AUV60737.1 | MG770215_p31 | hypothetical protein | phrog_18656 | unknown function | unknown function | -1 | 24146 | 24778 |
| AUV60763.1 | MG770215_p58 | hypothetical protein | phrog_25068 | unknown function | unknown function | -1 | 39421 | 39627 |
| AUV60719.1 | MG770215_p13 | major tail protein | phrog_117 | major tail protein | tail | 1 | 7910 | 8755 |
| AUV60759.1 | MG770215_p54 | nucleotide kinase | phrog_761 | thymidylate kinase | other | -1 | 36999 | 37511 |
| AUV60771.1 | MG770215_p66 | hypothetical protein | phrog_35008 | unknown function | unknown function | 1 | 43688 | 44059 |
| AUV60760.1 | MG770215_p55 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 37508 | 38986 |
| AUV60768.1 | MG770215_p63 | hypothetical protein | phrog_26138 | unknown function | unknown function | 1 | 43096 | 43293 |
| AUV60769.1 | MG770215_p64 | hypothetical protein | phrog_37355 | unknown function | unknown function | 1 | 43296 | 43478 |
| AUV60710.1 | MG770215_p4 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1111 | 2790 |
| AUV60751.1 | MG770215_p46 | nucleoside deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 32850 | 33317 |
| AUV60741.1 | MG770215_p35 | hypothetical protein | phrog_26548 | unknown function | unknown function | 1 | 26216 | 26311 |
| AUV60774.1 | MG770215_p69 | hypothetical protein | phrog_25464 | unknown function | unknown function | 1 | 44798 | 45034 |
| AUV60770.1 | MG770215_p65 | hypothetical protein | phrog_16535 | unknown function | unknown function | 1 | 43486 | 43695 |
| AUV60709.1 | MG770215_p2 | hypothetical protein | phrog_34392 | unknown function | unknown function | 1 | 626 | 871 |
| AUV60755.1 | MG770215_p50 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 34550 | 35398 |
| AUV60720.1 | MG770215_p15 | tail assembly chaperone | phrog_8595 | tail assembly chaperone | tail | 1 | 8815 | 9150 |
| AUV60731.1 | MG770215_p25 | hypothetical protein | phrog_7719 | minor tail protein | tail | 1 | 20150 | 21247 |
| AUV60764.1 | MG770215_p59 | hypothetical protein | phrog_13148 | unknown function | unknown function | -1 | 39624 | 40067 |
| AUV60772.1 | MG770215_p67 | hypothetical protein | phrog_16564 | unknown function | unknown function | 1 | 44043 | 44489 |
| AUV60724.1 | MG770215_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15362 | 17059 |
| AUV60773.1 | MG770215_p68 | hypothetical protein | phrog_24250 | unknown function | unknown function | 1 | 44497 | 44838 |
| AUV60721.1 | MG770215_p14 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 8815 | 9611 |
| AUV60722.1 | MG770215_p16 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 9601 | 14397 |
| AUV60756.1 | MG770215_p51 | hypothetical protein | phrog_13667 | unknown function | unknown function | -1 | 35395 | 36312 |
| AUV60753.1 | MG770215_p48 | lysin B | phrog_102 | endolysin | lysis | -1 | 33559 | 34407 |
| AUV60740.1 | MG770215_p34 | HTH DNA-binding domain protein | phrog_15118 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 25827 | 26219 |
| AUV60777.1 | MG770215_p42 | DNA recombinase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 28273 | 29091 |
| AUV60748.1 | MG770215_p43 | helicase | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 29134 | 30162 |
| AUV60752.1 | MG770215_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33314 | 33562 |
| AUV60735.1 | MG770215_p29 | hypothetical protein | phrog_5855 | unknown function | unknown function | -1 | 23158 | 23676 |
| AUV60716.1 | MG770215_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6901 | 7242 |
| AUV60742.1 | MG770215_p36 | hypothetical protein | phrog_34520 | unknown function | unknown function | 1 | 26366 | 26581 |
| AUV60757.1 | MG770215_p52 | hypothetical protein | phrog_1581 | unknown function | unknown function | -1 | 36309 | 36545 |
| AUV60766.1 | MG770215_p61 | hypothetical protein | phrog_22617 | unknown function | unknown function | 1 | 42328 | 42651 |
| AUV60733.1 | MG770215_p27 | hypothetical protein | phrog_21962 | tail protein | tail | 1 | 21602 | 22567 |
| AUV60743.1 | MG770215_p37 | endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26629 | 26916 |