| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG788324 |
Definition |
Lactobacillus phage PM411, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
69649 |
Host Name |
Lactobacillus plantarum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
42.31 |
Number of singletons |
16 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVH85747.1 | MG788324_p4 | transcriptional regulator | phrog_3736 | unknown function | unknown function | -1 | 2665 | 3612 |
| AVH85791.1 | MG788324_p48 | homing endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28184 | 28522 |
| AVH85763.1 | MG788324_p20 | copper-translocating P-type ATPase | phrog_1337 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 14513 | 14722 |
| AVH85819.1 | MG788324_p76 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 52365 | 52712 |
| AVH85793.1 | MG788324_p50 | phosphopantetheine adenylyltransferase | phrog_26486 | unknown function | unknown function | 1 | 28782 | 29024 |
| AVH85762.1 | MG788324_p19 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 13817 | 14191 |
| AVH85814.1 | MG788324_p71 | NAD(P) transhydrogenase subunit beta | phrog_1129 | holin | lysis | 1 | 48207 | 48491 |
| AVH85758.1 | MG788324_p15 | glutathione reductase | phrog_24611 | unknown function | unknown function | -1 | 11997 | 12254 |
| AVH85775.1 | MG788324_p32 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 19301 | 19924 |
| AVH85834.1 | MG788324_p91 | hypothetical protein | phrog_13404 | holin | lysis | 1 | 68915 | 69277 |
| AVH85779.1 | MG788324_p36 | acetyl-coenzyme A synthetase | singleton | unknown function | unknown function | 1 | 22640 | 22837 |
| AVH85778.1 | MG788324_p35 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22318 | 22659 |
| AVH85749.1 | MG788324_p6 | fumarate reductase flavoprotein subunit | singleton | unknown function | unknown function | 1 | 4573 | 7011 |
| AVH85829.1 | MG788324_p86 | hypothetical protein | phrog_12210 | unknown function | unknown function | 1 | 66467 | 66628 |
| AVH85765.1 | MG788324_p22 | galactose-1-phosphate uridylyltransferase | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 14929 | 15201 |
| AVH85825.1 | MG788324_p82 | hypothetical protein | phrog_202 | distal tail protein Dit | tail | 1 | 59720 | 61495 |
| AVH85832.1 | MG788324_p89 | lysin | phrog_291 | endolysin | lysis | 1 | 67606 | 68634 |
| AVH85802.1 | MG788324_p59 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 35412 | 35834 |
| AVH85744.1 | MG788324_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 248 | 1417 |
| AVH85782.1 | MG788324_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23306 | 23431 |
| AVH85788.1 | MG788324_p45 | LSU ribosomal protein L3p | singleton | unknown function | unknown function | 1 | 26571 | 27293 |
| AVH85818.1 | MG788324_p75 | NAD(P) transhydrogenase subunit beta | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 52061 | 52378 |
| AVH85800.1 | MG788324_p57 | FkbH | phrog_25 | head closure Hc1 | connector | 1 | 34622 | 35011 |
| AVH85764.1 | MG788324_p21 | hypothetical protein | phrog_5118 | unknown function | unknown function | 1 | 14726 | 14929 |
| AVH85824.1 | MG788324_p81 | tail length tape-measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 54892 | 59643 |
| AVH85751.1 | MG788324_p8 | purine trans deoxyribosylase | phrog_7995 | nucleoside deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 7730 | 8170 |
| AVH85831.1 | MG788324_p88 | alanyl-tRNA synthetase | phrog_5499 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 67124 | 67594 |
| AVH85777.1 | MG788324_p34 | hypothetical protein | phrog_1313 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 20786 | 22060 |
| AVH85771.1 | MG788324_p28 | pyruvate oxidase | singleton | unknown function | unknown function | 1 | 16579 | 16698 |
| AVH85787.1 | MG788324_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25501 | 26490 |
| AVH85795.1 | MG788324_p52 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 29416 | 31098 |
| AVH85801.1 | MG788324_p58 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 35008 | 35415 |
| AVH85745.1 | MG788324_p2 | nisin resistance protein | singleton | unknown function | unknown function | -1 | 1508 | 2479 |
| AVH85807.1 | MG788324_p64 | tail length tape-measure protein | phrog_1293 | tail length tape measure protein | tail | 1 | 37351 | 41895 |
| AVH85768.1 | MG788324_p25 | HlyB/MsbA family ABC transporter | phrog_27824 | ABC transporter | moron, auxiliary metabolic gene and host takeover | 1 | 15944 | 16129 |
| AVH85757.1 | MG788324_p14 | alpha-glucosidase | phrog_6929 | universal stress protein | other | -1 | 11466 | 11897 |
| AVH85822.1 | MG788324_p79 | major tail protein | phrog_88 | major tail protein | tail | 1 | 53516 | 54169 |
| AVH85789.1 | MG788324_p46 | hypothetical protein | phrog_10213 | unknown function | unknown function | 1 | 27508 | 27918 |
| AVH85773.1 | MG788324_p30 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 17245 | 18585 |
| AVH85794.1 | MG788324_p51 | LSU ribosomal protein L18p | phrog_2343 | terminase small subunit | head and packaging | 1 | 29132 | 29419 |
| AVH85790.1 | MG788324_p47 | hypothetical protein | phrog_23649 | unknown function | unknown function | 1 | 27985 | 28200 |
| AVH85812.1 | MG788324_p69 | rod shape-determining protein | phrog_11342 | unknown function | unknown function | 1 | 47627 | 48010 |
| AVH85786.1 | MG788324_p43 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 24972 | 25385 |
| AVH85808.1 | MG788324_p65 | internalin | phrog_33 | distal tail protein Dit | tail | 1 | 41899 | 42720 |
| AVH85817.1 | MG788324_p74 | hypothetical protein | phrog_2263 | major head protein | head and packaging | 1 | 50066 | 51916 |
| AVH85827.1 | MG788324_p84 | hypothetical protein | phrog_7660 | tail fiber protein | tail | 1 | 63988 | 66228 |
| AVH85809.1 | MG788324_p66 | hypothetical protein | phrog_1330 | tail protein | tail | 1 | 42740 | 46666 |
| AVH85811.1 | MG788324_p68 | hypothetical protein | phrog_19261 | unknown function | unknown function | 1 | 47176 | 47610 |
| AVH85761.1 | MG788324_p18 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 13376 | 13807 |
| AVH85770.1 | MG788324_p27 | hypothetical protein | phrog_22814 | unknown function | unknown function | 1 | 16274 | 16591 |
| AVH85799.1 | MG788324_p56 | hypothetical protein | phrog_749 | unknown function | unknown function | 1 | 34336 | 34641 |
| AVH85826.1 | MG788324_p83 | hypothetical protein | phrog_4798 | tail protein | tail | 1 | 61559 | 63970 |
| AVH85756.1 | MG788324_p13 | hypothetical protein | phrog_18781 | unknown function | unknown function | -1 | 10686 | 11354 |
| AVH85766.1 | MG788324_p23 | hemolysin activation/secretion protein | phrog_15098 | unknown function | unknown function | 1 | 15339 | 15788 |
| AVH85792.1 | MG788324_p49 | diaminopimelate decarboxylase | phrog_17806 | unknown function | unknown function | 1 | 28522 | 28764 |
| AVH85755.1 | MG788324_p12 | hypothetical protein | phrog_1 | integrase | integration and excision | -1 | 9359 | 10516 |
| AVH85753.1 | MG788324_p10 | 3-oxoacyl-[acyl-carrier protein] reductase | singleton | unknown function | unknown function | 1 | 8515 | 8982 |
| AVH85774.1 | MG788324_p31 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 18657 | 19298 |
| AVH85759.1 | MG788324_p16 | alpha-amylase | phrog_15564 | unknown function | unknown function | -1 | 12378 | 12554 |
| AVH85816.1 | MG788324_p73 | portal protein | singleton | unknown function | unknown function | 1 | 49669 | 50103 |
| AVH85821.1 | MG788324_p78 | tail component | phrog_1217 | tail protein | tail | 1 | 53119 | 53499 |
| AVH85803.1 | MG788324_p60 | major tail protein | phrog_88 | major tail protein | tail | 1 | 35849 | 36454 |
| AVH85760.1 | MG788324_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12724 | 13284 |
| AVH85820.1 | MG788324_p77 | tail protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 52715 | 53119 |
| AVH85823.1 | MG788324_p80 | hypothetical protein | phrog_1346 | tail protein | tail | 1 | 54245 | 54619 |
| AVH85833.1 | MG788324_p90 | hypothetical protein | phrog_689 | holin | lysis | 1 | 68634 | 68903 |
| AVH85781.1 | MG788324_p38 | ATPase | phrog_32922 | unknown function | unknown function | 1 | 23145 | 23303 |
| AVH85767.1 | MG788324_p24 | glycyl-tRNA synthetase beta chain | phrog_26235 | unknown function | unknown function | 1 | 15775 | 15951 |
| AVH85785.1 | MG788324_p42 | penicillin-binding protein 2 | phrog_27493 | unknown function | unknown function | 1 | 24649 | 24960 |
| AVH85784.1 | MG788324_p41 | Rhs family protein | phrog_419 | unknown function | unknown function | 1 | 23951 | 24409 |
| AVH85797.1 | MG788324_p54 | Clp protease-like protein | phrog_94 | head maturation protease | head and packaging | 1 | 32246 | 32998 |
| AVH85769.1 | MG788324_p26 | L-proline glycine betaine ABC transport system permease protein | phrog_22687 | unknown function | unknown function | 1 | 16101 | 16271 |
| AVH85746.1 | MG788324_p3 | membrane protein | singleton | unknown function | unknown function | -1 | 2528 | 2668 |
| AVH85780.1 | MG788324_p37 | hypothetical protein | phrog_154 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 22830 | 23141 |
| AVH85748.1 | MG788324_p5 | fumarate reductase flavoprotein subunit precursor | singleton | unknown function | unknown function | 1 | 3956 | 4570 |
| AVH85750.1 | MG788324_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7099 | 7659 |
| AVH85776.1 | MG788324_p33 | replication protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 19995 | 20789 |
| AVH85815.1 | MG788324_p72 | hypothetical protein | phrog_291 | endolysin | lysis | 1 | 48491 | 49423 |
| AVH85813.1 | MG788324_p70 | DNA polymerase III alpha subunit | phrog_6664 | unknown function | unknown function | 1 | 48013 | 48207 |
| AVH85804.1 | MG788324_p61 | lipoprotein releasing system transmembrane protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 36429 | 36701 |
| AVH85752.1 | MG788324_p9 | minor tail protein | singleton | unknown function | unknown function | 1 | 8169 | 8333 |
| AVH85805.1 | MG788324_p62 | ATP-dependent DNA helicase | phrog_187 | head-tail adaptor | connector | 1 | 36773 | 37087 |
| AVH85828.1 | MG788324_p85 | hypothetical protein | phrog_11075 | unknown function | unknown function | 1 | 66221 | 66463 |
| AVH85783.1 | MG788324_p40 | tail protein | phrog_98 | unknown function | unknown function | 1 | 23664 | 23954 |
| AVH85772.1 | MG788324_p29 | monooxygenase | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 16695 | 17174 |
| AVH85796.1 | MG788324_p53 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 31117 | 32259 |
| AVH85798.1 | MG788324_p55 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 33019 | 34197 |
| AVH85830.1 | MG788324_p87 | hypothetical protein | phrog_4440 | tail fiber protein | tail | 1 | 66612 | 67118 |
| AVH85806.1 | MG788324_p63 | Kup system potassium uptake protein | phrog_25839 | unknown function | unknown function | 1 | 37111 | 37332 |
| AVH85810.1 | MG788324_p67 | hypothetical protein | phrog_1401 | unknown function | unknown function | 1 | 46689 | 47174 |
| AVH85754.1 | MG788324_p11 | NTPase | singleton | unknown function | unknown function | 1 | 8957 | 9187 |