| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG793454 |
Definition |
Mycobacterium phage SWU2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
50013 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
76 |
%GC |
62.66 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUV61960.1 | MG793454_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 331 | 702 |
| AUV62023.1 | MG793454_p64 | DNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43467 | 44282 |
| AUV61986.1 | MG793454_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20216 | 22198 |
| AUV62027.1 | MG793454_p68 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45245 | 46039 |
| AUV61974.1 | MG793454_p15 | capsid and scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11787 | 12290 |
| AUV61964.1 | MG793454_p5 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 2344 | 3564 |
| AUV62024.1 | MG793454_p65 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44320 | 44679 |
| AUV62011.1 | MG793454_p52 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 38195 | 38587 |
| AUV61999.1 | MG793454_p40 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 30122 | 30484 |
| AUV61967.1 | MG793454_p8 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 5309 | 5446 |
| AUV61975.1 | MG793454_p16 | hypothetical protein | phrog_10 | major head protein | head and packaging | 1 | 12324 | 13301 |
| AUV61982.1 | MG793454_p23 | tail fibers protein | phrog_117 | major tail protein | tail | 1 | 15292 | 15873 |
| AUV62022.1 | MG793454_p63 | hypothetical protein | phrog_2068 | phosphoribosyl transferase | other | -1 | 42784 | 43446 |
| AUV61992.1 | MG793454_p33 | integrase | phrog_95 | integrase | integration and excision | -1 | 26672 | 28138 |
| AUV61984.1 | MG793454_p25 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | 1 | 16544 | 16834 |
| AUV62013.1 | MG793454_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38852 | 39364 |
| AUV61961.1 | MG793454_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 742 | 1176 |
| AUV61973.1 | MG793454_p14 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 10711 | 11736 |
| AUV62025.1 | MG793454_p66 | hypothetical protein | phrog_3236 | unknown function | unknown function | -1 | 44676 | 45014 |
| AUV61968.1 | MG793454_p9 | endolysin | phrog_317 | endolysin | lysis | 1 | 5676 | 7025 |
| AUV62018.1 | MG793454_p59 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 41753 | 42202 |
| AUV62034.1 | MG793454_p75 | hypothetical protein | phrog_1617 | unknown function | unknown function | -1 | 47889 | 48767 |
| AUV62021.1 | MG793454_p62 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 42515 | 42751 |
| AUV61998.1 | MG793454_p39 | hypothetical protein | phrog_31400 | unknown function | unknown function | -1 | 29940 | 30125 |
| AUV62035.1 | MG793454_p76 | hypothetical protein | phrog_16818 | unknown function | unknown function | -1 | 48810 | 49064 |
| AUV62009.1 | MG793454_p50 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36961 | 37731 |
| AUV61976.1 | MG793454_p17 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 13365 | 13553 |
| AUV62010.1 | MG793454_p51 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37728 | 38198 |
| AUV62029.1 | MG793454_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46316 | 46951 |
| AUV61971.1 | MG793454_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7566 | 9260 |
| AUV61995.1 | MG793454_p36 | hypothetical protein | phrog_9328 | unknown function | unknown function | -1 | 28955 | 29245 |
| AUV61969.1 | MG793454_p10 | hypothetical protein | phrog_526 | holin | lysis | 1 | 7022 | 7441 |
| AUV62004.1 | MG793454_p45 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32953 | 33168 |
| AUV62003.1 | MG793454_p44 | hypothetical protein | phrog_18021 | unknown function | unknown function | -1 | 32738 | 32956 |
| AUV62017.1 | MG793454_p58 | hypothetical protein | phrog_789 | esterase/lipase | other | -1 | 40935 | 41747 |
| AUV61977.1 | MG793454_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13561 | 13935 |
| AUV61988.1 | MG793454_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 24012 | 24476 |
| AUV61985.1 | MG793454_p26 | tail length tape-measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16834 | 20211 |
| AUV61997.1 | MG793454_p38 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 29755 | 29943 |
| AUV61978.1 | MG793454_p19 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 13932 | 14102 |
| AUV61980.1 | MG793454_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14484 | 14828 |
| AUV62012.1 | MG793454_p53 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 38580 | 38855 |
| AUV61966.1 | MG793454_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 4637 | 5299 |
| AUV61965.1 | MG793454_p6 | tail fiber protein | phrog_819 | tail protein | tail | 1 | 3591 | 4637 |
| AUV61983.1 | MG793454_p24 | hypothetical protein | phrog_330 | tail assembly chaperone | tail | 1 | 16044 | 16406 |
| AUV61970.1 | MG793454_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7446 | 7613 |
| AUV61972.1 | MG793454_p13 | portal (connector) protein | phrog_104 | portal protein | head and packaging | 1 | 9257 | 10714 |
| AUV62032.1 | MG793454_p73 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 47361 | 47564 |
| AUV62005.1 | MG793454_p46 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 33203 | 33418 |
| AUV61979.1 | MG793454_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14099 | 14482 |
| AUV61963.1 | MG793454_p4 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 1566 | 2318 |
| AUV62026.1 | MG793454_p67 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 45011 | 45241 |
| AUV61981.1 | MG793454_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14837 | 15280 |
| AUV62015.1 | MG793454_p56 | hypothetical protein | phrog_363 | DNA methyltransferase | other | -1 | 39712 | 40365 |
| AUV62031.1 | MG793454_p72 | hypothetical protein | phrog_15203 | unknown function | unknown function | -1 | 47211 | 47324 |
| AUV61991.1 | MG793454_p32 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 26300 | 26623 |
| AUV62006.1 | MG793454_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33484 | 34038 |
| AUV62014.1 | MG793454_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39315 | 39719 |
| AUV61989.1 | MG793454_p30 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24505 | 24837 |
| AUV61994.1 | MG793454_p35 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 28797 | 28958 |
| AUV62028.1 | MG793454_p69 | hypothetical protein | phrog_4421 | unknown function | unknown function | -1 | 45993 | 46283 |
| AUV61993.1 | MG793454_p34 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 28291 | 28797 |
| AUV62001.1 | MG793454_p42 | hypothetical protein | phrog_7968 | unknown function | unknown function | -1 | 30734 | 30880 |
| AUV62016.1 | MG793454_p57 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40409 | 40837 |
| AUV62008.1 | MG793454_p49 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36062 | 36964 |
| AUV61962.1 | MG793454_p3 | minor tail subunit | phrog_1126 | unknown function | unknown function | 1 | 1253 | 1576 |
| AUV62007.1 | MG793454_p48 | ribonucleotide reductase of class II | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34023 | 36065 |
| AUV61996.1 | MG793454_p37 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 29364 | 29657 |
| AUV62033.1 | MG793454_p74 | hypothetical protein | phrog_2246 | unknown function | unknown function | -1 | 47567 | 47794 |
| AUV62000.1 | MG793454_p41 | hypothetical protein | phrog_2019 | unknown function | unknown function | -1 | 30474 | 30737 |
| AUV62019.1 | MG793454_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42199 | 42348 |
| AUV62020.1 | MG793454_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42345 | 42518 |
| AUV62002.1 | MG793454_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30889 | 32727 |
| AUV61990.1 | MG793454_p31 | hypothetical protein | phrog_2683 | minor tail protein | tail | 1 | 24834 | 26297 |
| AUV61987.1 | MG793454_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 22195 | 23997 |
| AUV62030.1 | MG793454_p71 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 46954 | 47121 |