| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG812495 |
Definition |
Mycobacterium phage Pippin, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52034 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
63.75 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUX82423.1 | MG812495_p37 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28398 | 29201 |
| AUX82425.1 | MG812495_p39 | integrase | phrog_95 | integrase | integration and excision | 1 | 29765 | 31279 |
| AUX82447.1 | MG812495_p63 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40573 | 41382 |
| AUX82459.1 | MG812495_p75 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45589 | 45984 |
| AUX82408.1 | MG812495_p22 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 14494 | 14940 |
| AUX82399.1 | MG812495_p13 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7322 | 9010 |
| AUX82422.1 | MG812495_p36 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28210 | 28401 |
| AUX82396.1 | MG812495_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 4409 | 5842 |
| AUX82395.1 | MG812495_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4152 | 4409 |
| AUX82482.1 | MG812495_p57 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38981 | 39496 |
| AUX82389.1 | MG812495_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 749 | 1057 |
| AUX82403.1 | MG812495_p17 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11968 | 12978 |
| AUX82415.1 | MG812495_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21464 | 23266 |
| AUX82452.1 | MG812495_p68 | hypothetical protein | phrog_5961 | unknown function | unknown function | -1 | 42306 | 42464 |
| AUX82437.1 | MG812495_p51 | helix-turn-helix DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36133 | 36924 |
| AUX82421.1 | MG812495_p35 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27880 | 28200 |
| AUX82428.1 | MG812495_p42 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31995 | 32165 |
| AUX82466.1 | MG812495_p82 | hypothetical protein | phrog_12963 | unknown function | unknown function | -1 | 47923 | 48159 |
| AUX82463.1 | MG812495_p79 | hypothetical protein | phrog_6510 | unknown function | unknown function | -1 | 47362 | 47544 |
| AUX82401.1 | MG812495_p15 | capsid maturation protein | phrog_193 | head maturation protease | head and packaging | 1 | 10446 | 11387 |
| AUX82472.1 | MG812495_p88 | hypothetical protein | phrog_7647 | unknown function | unknown function | -1 | 49069 | 49296 |
| AUX82440.1 | MG812495_p54 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37821 | 38003 |
| AUX82458.1 | MG812495_p74 | membrane protein | phrog_1584 | unknown function | unknown function | -1 | 45275 | 45592 |
| AUX82454.1 | MG812495_p70 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 43292 | 44002 |
| AUX82469.1 | MG812495_p85 | hypothetical protein | phrog_11336 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 48503 | 48697 |
| AUX82433.1 | MG812495_p47 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33381 | 35168 |
| AUX82465.1 | MG812495_p81 | membrane protein | phrog_1155 | unknown function | unknown function | -1 | 47738 | 47926 |
| AUX82473.1 | MG812495_p89 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 49592 | 49957 |
| AUX82443.1 | MG812495_p58 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39475 | 39633 |
| AUX82464.1 | MG812495_p80 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47541 | 47741 |
| AUX82483.1 | MG812495_p61 | membrane protein | phrog_1019 | unknown function | unknown function | -1 | 40224 | 40310 |
| AUX82444.1 | MG812495_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39630 | 39764 |
| AUX82388.1 | MG812495_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 600 | 752 |
| AUX82451.1 | MG812495_p67 | helix-turn-helix DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42115 | 42309 |
| AUX82442.1 | MG812495_p56 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38614 | 39135 |
| AUX82468.1 | MG812495_p84 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48306 | 48473 |
| AUX82406.1 | MG812495_p20 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 13733 | 14095 |
| AUX82405.1 | MG812495_p19 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13284 | 13733 |
| AUX82470.1 | MG812495_p86 | hypothetical protein | phrog_8345 | unknown function | unknown function | -1 | 48694 | 48900 |
| AUX82430.1 | MG812495_p44 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32254 | 32541 |
| AUX82420.1 | MG812495_p34 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26309 | 27787 |
| AUX82456.1 | MG812495_p72 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 44798 | 44911 |
| AUX82480.1 | MG812495_p96 | hypothetical protein | phrog_13308 | unknown function | unknown function | -1 | 51380 | 51631 |
| AUX82432.1 | MG812495_p46 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32918 | 33403 |
| AUX82427.1 | MG812495_p41 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31624 | 31995 |
| AUX82429.1 | MG812495_p43 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32162 | 32257 |
| AUX82412.1 | MG812495_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16733 | 19204 |
| AUX82414.1 | MG812495_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21282 | 21464 |
| AUX82431.1 | MG812495_p45 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32538 | 32921 |
| AUX82484.1 | MG812495_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51624 | 51905 |
| AUX82407.1 | MG812495_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14095 | 14490 |
| AUX82435.1 | MG812495_p49 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35466 | 35957 |
| AUX82434.1 | MG812495_p48 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35205 | 35435 |
| AUX82419.1 | MG812495_p33 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24463 | 26316 |
| AUX82439.1 | MG812495_p53 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37057 | 37824 |
| AUX82391.1 | MG812495_p4 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 1214 | 1654 |
| AUX82409.1 | MG812495_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14949 | 15800 |
| AUX82424.1 | MG812495_p38 | membrane protein | phrog_411 | unknown function | unknown function | 1 | 29322 | 29618 |
| AUX82462.1 | MG812495_p78 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47096 | 47365 |
| AUX82393.1 | MG812495_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3169 | 3870 |
| AUX82461.1 | MG812495_p77 | membrane protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46800 | 47099 |
| AUX82438.1 | MG812495_p52 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36917 | 37057 |
| AUX82471.1 | MG812495_p87 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48920 | 49072 |
| AUX82478.1 | MG812495_p94 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 51088 | 51246 |
| AUX82410.1 | MG812495_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15922 | 16299 |
| AUX82417.1 | MG812495_p31 | membrane protein | phrog_981 | minor tail protein | tail | 1 | 23747 | 24094 |
| AUX82475.1 | MG812495_p91 | membrane protein | phrog_2212 | unknown function | unknown function | -1 | 50172 | 50255 |
| AUX82479.1 | MG812495_p95 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51288 | 51383 |
| AUX82446.1 | MG812495_p62 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40307 | 40576 |
| AUX82476.1 | MG812495_p92 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 50407 | 50562 |
| AUX82397.1 | MG812495_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 5832 | 6800 |
| AUX82404.1 | MG812495_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13057 | 13284 |
| AUX82474.1 | MG812495_p90 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 49957 | 50175 |
| AUX82441.1 | MG812495_p55 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38000 | 38617 |
| AUX82449.1 | MG812495_p65 | helix-turn-helix DNA binding domain protein | phrog_520 | unknown function | unknown function | -1 | 41512 | 41805 |
| AUX82402.1 | MG812495_p16 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11446 | 11958 |
| AUX82390.1 | MG812495_p3 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 1054 | 1200 |
| AUX82460.1 | MG812495_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46026 | 46538 |
| AUX82477.1 | MG812495_p93 | membrane protein | phrog_828 | unknown function | unknown function | 1 | 50646 | 50852 |
| AUX82426.1 | MG812495_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31355 | 31627 |
| AUX82450.1 | MG812495_p66 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 41802 | 42122 |
| AUX82411.1 | MG812495_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15922 | 16721 |
| AUX82481.1 | MG812495_p5 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1733 | 2023 |
| AUX82448.1 | MG812495_p64 | membrane protein | phrog_1705 | unknown function | unknown function | -1 | 41369 | 41515 |
| AUX82400.1 | MG812495_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9007 | 10449 |
| AUX82418.1 | MG812495_p32 | membrane protein | phrog_1397 | unknown function | unknown function | 1 | 24091 | 24438 |
| AUX82445.1 | MG812495_p60 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39761 | 40237 |
| AUX82455.1 | MG812495_p71 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 44340 | 44801 |
| AUX82413.1 | MG812495_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19228 | 21285 |
| AUX82467.1 | MG812495_p83 | hypothetical protein | phrog_9825 | unknown function | unknown function | -1 | 48156 | 48305 |
| AUX82436.1 | MG812495_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35954 | 36136 |
| AUX82398.1 | MG812495_p12 | HNH endonuclease | phrog_8660 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6820 | 7338 |
| AUX82453.1 | MG812495_p69 | exonuclease/helicase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42492 | 43295 |
| AUX82416.1 | MG812495_p30 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23304 | 23750 |
| AUX82392.1 | MG812495_p6 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2089 | 3159 |
| AUX82394.1 | MG812495_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3884 | 4144 |
| AUX82457.1 | MG812495_p73 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 44904 | 45056 |