| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG820642 |
Definition |
Propionibacterium phage pa28, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus; unclassified Pahexavirus. |
DB of origin |
NUCCORE |
Length |
29733 |
Host Name |
Propionibacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
44 |
%GC |
54.13 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUX13537.1 | MG820642_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4641 | 5588 |
| AUV62467.1 | MG820642_p16 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 12259 | 13416 |
| AUV62486.1 | MG820642_p35 | exonuclease | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23774 | 24721 |
| AUV62495.1 | MG820642_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29172 | 29291 |
| AUV62470.1 | MG820642_p19 | tail fiber protein | phrog_1806 | collagen like minor tail | tail | 1 | 14578 | 15393 |
| AUV62482.1 | MG820642_p31 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21596 | 21952 |
| AUV62491.1 | MG820642_p40 | hypothetical protein | phrog_7707 | unknown function | unknown function | -1 | 26248 | 26535 |
| AUV62493.1 | MG820642_p42 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 27006 | 27314 |
| AUV62474.1 | MG820642_p23 | hypothetical protein | phrog_1729 | unknown function | unknown function | -1 | 17324 | 17716 |
| AUV62479.1 | MG820642_p28 | hypothetical protein | phrog_2548 | unknown function | unknown function | -1 | 19557 | 20120 |
| AUV62461.1 | MG820642_p10 | hypothetical protein | phrog_1892 | minor tail protein | tail | 1 | 6740 | 7111 |
| AUV62492.1 | MG820642_p41 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26666 | 26974 |
| AUV62487.1 | MG820642_p36 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24721 | 25080 |
| AUV62473.1 | MG820642_p22 | hypothetical protein | phrog_2092 | unknown function | unknown function | -1 | 16803 | 17318 |
| AUX13538.1 | MG820642_p11 | major tail protein | phrog_117 | major tail protein | tail | 1 | 7170 | 7811 |
| AUV62485.1 | MG820642_p34 | hypothetical protein | phrog_1890 | unknown function | unknown function | -1 | 23367 | 23777 |
| AUV62483.1 | MG820642_p32 | hypothetical protein | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 21952 | 22815 |
| AUV62456.1 | MG820642_p4 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 3218 | 3973 |
| AUV62476.1 | MG820642_p25 | hypothetical protein | phrog_1340 | unknown function | unknown function | -1 | 18005 | 18325 |
| AUV62484.1 | MG820642_p33 | hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22857 | 23327 |
| AUV62468.1 | MG820642_p17 | hypothetical protein | phrog_1910 | lectin | other | 1 | 13436 | 14254 |
| AUV62488.1 | MG820642_p37 | hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 25187 | 25387 |
| AUV62457.1 | MG820642_p5 | capsid and scaffold protein | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4084 | 4641 |
| AUV62472.1 | MG820642_p21 | hypothetical protein | phrog_443 | holin | lysis | 1 | 16315 | 16716 |
| AUV62478.1 | MG820642_p27 | hypothetical protein | phrog_1923 | unknown function | unknown function | -1 | 19379 | 19573 |
| AUV62481.1 | MG820642_p30 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20727 | 21398 |
| AUV62496.1 | MG820642_p44 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29369 | 29671 |
| AUV62490.1 | MG820642_p39 | hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25629 | 26162 |
| AUV62464.1 | MG820642_p13 | hypothetical protein | phrog_3166 | unknown function | unknown function | 1 | 8234 | 8521 |
| AUV62453.1 | MG820642_p1 | hypothetical protein | phrog_1897 | terminase small subunit | head and packaging | 1 | 20 | 373 |
| AUV62480.1 | MG820642_p29 | hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 20117 | 20683 |
| AUV62477.1 | MG820642_p26 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18336 | 19382 |
| AUV62466.1 | MG820642_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 11310 | 12251 |
| AUV62454.1 | MG820642_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 378 | 1889 |
| AUV62475.1 | MG820642_p24 | hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17720 | 17986 |
| AUV62471.1 | MG820642_p18 | hypothetical protein | phrog_1958 | minor tail protein | tail | 1 | 14311 | 14574 |
| AUV62460.1 | MG820642_p9 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6453 | 6743 |
| AUV62459.1 | MG820642_p8 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6099 | 6446 |
| AUV62465.1 | MG820642_p14 | tail length tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8529 | 11294 |
| AUV62489.1 | MG820642_p38 | hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 25384 | 25611 |
| AUX13539.1 | MG820642_p20 | hypothetical protein | phrog_670 | endolysin | lysis | 1 | 15445 | 16302 |
| AUV62455.1 | MG820642_p3 | portal (connector) protein | phrog_104 | portal protein | head and packaging | 1 | 1886 | 3211 |
| AUV62463.1 | MG820642_p12 | hypothetical protein | phrog_1927 | tail assembly chaperone | tail | 1 | 7839 | 8135 |
| AUV62458.1 | MG820642_p7 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 5618 | 6097 |