| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG839014 |
Definition |
Mycobacterium phage RagingRooster, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus; unclassified Pipefishvirus. |
DB of origin |
NUCCORE |
Length |
68670 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
103 |
%GC |
67.57 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUX82566.1 | MG839014_p82 | hypothetical protein | phrog_6460 | unknown function | unknown function | -1 | 61216 | 61386 |
| AUX82582.1 | MG839014_p98 | hypothetical protein | phrog_2972 | unknown function | unknown function | -1 | 67032 | 67268 |
| AUX82583.1 | MG839014_p99 | hypothetical protein | phrog_4825 | unknown function | unknown function | 1 | 67446 | 67619 |
| AUX82567.1 | MG839014_p83 | hypothetical protein | phrog_6338 | unknown function | unknown function | -1 | 61383 | 61541 |
| AUX82575.1 | MG839014_p91 | hypothetical protein | phrog_6428 | unknown function | unknown function | -1 | 63646 | 63861 |
| AUX82540.1 | MG839014_p56 | hypothetical protein | phrog_6342 | unknown function | unknown function | -1 | 50778 | 51518 |
| AUX82586.1 | MG839014_p102 | hypothetical protein | phrog_6432 | unknown function | unknown function | 1 | 68099 | 68254 |
| AUX82529.1 | MG839014_p45 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 39510 | 40208 |
| AUX82522.1 | MG839014_p38 | hypothetical protein | phrog_3329 | unknown function | unknown function | 1 | 35526 | 36875 |
| AUX82560.1 | MG839014_p76 | HNH endonuclease | phrog_928 | unknown function | unknown function | 1 | 59577 | 60104 |
| AUX82488.1 | MG839014_p4 | PAPs reductase-like domain protein | phrog_2302 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 1069 | 2151 |
| AUX82547.1 | MG839014_p63 | hypothetical protein | phrog_6656 | unknown function | unknown function | -1 | 54813 | 55043 |
| AUX82559.1 | MG839014_p75 | hypothetical protein | phrog_6229 | unknown function | unknown function | 1 | 59248 | 59595 |
| AUX82494.1 | MG839014_p10 | membrane protein | phrog_781 | unknown function | unknown function | 1 | 5950 | 6285 |
| AUX82523.1 | MG839014_p39 | hypothetical protein | phrog_915 | unknown function | unknown function | 1 | 36898 | 37266 |
| AUX82578.1 | MG839014_p94 | hypothetical protein | phrog_6114 | unknown function | unknown function | -1 | 64543 | 64722 |
| AUX82534.1 | MG839014_p50 | hypothetical protein | phrog_7519 | unknown function | unknown function | -1 | 44878 | 45057 |
| AUX82511.1 | MG839014_p27 | hypothetical protein | phrog_1118 | tail assembly chaperone | tail | 1 | 19777 | 20370 |
| AUX82558.1 | MG839014_p74 | hypothetical protein | phrog_6511 | unknown function | unknown function | 1 | 59085 | 59237 |
| AUX82516.1 | MG839014_p32 | minor tail protein | phrog_356 | minor tail protein | tail | 1 | 30844 | 32226 |
| AUX82569.1 | MG839014_p85 | hypothetical protein | phrog_7541 | unknown function | unknown function | -1 | 61887 | 62219 |
| AUX82498.1 | MG839014_p14 | major capsid protein | phrog_777 | major head protein | head and packaging | 1 | 11027 | 13042 |
| AUX82487.1 | MG839014_p3 | hypothetical protein | phrog_6307 | unknown function | unknown function | 1 | 851 | 1072 |
| AUX82538.1 | MG839014_p54 | hypothetical protein | phrog_1371 | unknown function | unknown function | -1 | 47625 | 48098 |
| AUX82580.1 | MG839014_p96 | hypothetical protein | phrog_1010 | unknown function | unknown function | -1 | 65284 | 65772 |
| AUX82531.1 | MG839014_p47 | lysin B | phrog_102 | endolysin | lysis | 1 | 41537 | 42601 |
| AUX82587.1 | MG839014_p103 | hypothetical protein | phrog_5930 | unknown function | unknown function | 1 | 68319 | 68621 |
| AUX82549.1 | MG839014_p65 | hypothetical protein | phrog_982 | unknown function | unknown function | -1 | 55467 | 55736 |
| AUX82565.1 | MG839014_p81 | hypothetical protein | phrog_6304 | unknown function | unknown function | -1 | 61055 | 61219 |
| AUX82543.1 | MG839014_p59 | hypothetical protein | phrog_6936 | unknown function | unknown function | -1 | 53604 | 53741 |
| AUX82553.1 | MG839014_p69 | hypothetical protein | phrog_4938 | unknown function | unknown function | 1 | 57405 | 57569 |
| AUX82573.1 | MG839014_p89 | hypothetical protein | phrog_5355 | unknown function | unknown function | -1 | 62991 | 63146 |
| AUX82539.1 | MG839014_p55 | DNA recombinase | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 48141 | 50744 |
| AUX82571.1 | MG839014_p87 | hypothetical protein | phrog_7490 | unknown function | unknown function | -1 | 62500 | 62688 |
| AUX82564.1 | MG839014_p80 | hypothetical protein | phrog_4461 | unknown function | unknown function | -1 | 60960 | 61058 |
| AUX82512.1 | MG839014_p28 | tape measure protein | phrog_934 | tail length tape measure protein | tail | 1 | 20396 | 26137 |
| AUX82532.1 | MG839014_p48 | hypothetical protein | phrog_870 | unknown function | unknown function | -1 | 42671 | 43216 |
| AUX82517.1 | MG839014_p33 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 32223 | 33425 |
| AUX82503.1 | MG839014_p19 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 15462 | 15941 |
| AUX82577.1 | MG839014_p93 | hypothetical protein | phrog_2903 | unknown function | unknown function | -1 | 64262 | 64543 |
| AUX82520.1 | MG839014_p36 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34280 | 34933 |
| AUX82509.1 | MG839014_p25 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 19009 | 19380 |
| AUX82507.1 | MG839014_p23 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 17722 | 18480 |
| AUX82528.1 | MG839014_p44 | helix-turn-helix DNA binding protein | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39028 | 39513 |
| AUX82548.1 | MG839014_p64 | hypothetical protein | phrog_6105 | unknown function | unknown function | -1 | 55040 | 55390 |
| AUX82502.1 | MG839014_p18 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 15004 | 15465 |
| AUX82570.1 | MG839014_p86 | hypothetical protein | phrog_7414 | unknown function | unknown function | -1 | 62216 | 62503 |
| AUX82572.1 | MG839014_p88 | HicA-like toxin | phrog_2089 | unknown function | unknown function | -1 | 62782 | 62994 |
| AUX82513.1 | MG839014_p29 | minor tail protein | phrog_838 | unknown function | unknown function | 1 | 26147 | 27577 |
| AUX82501.1 | MG839014_p17 | hypothetical protein | phrog_565 | holin | lysis | 1 | 14567 | 15001 |
| AUX82493.1 | MG839014_p9 | hypothetical protein | phrog_6276 | unknown function | unknown function | -1 | 5549 | 5845 |
| AUX82518.1 | MG839014_p34 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 33452 | 33835 |
| AUX82535.1 | MG839014_p51 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 45145 | 46842 |
| AUX82541.1 | MG839014_p57 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 51515 | 53332 |
| AUX82555.1 | MG839014_p71 | hypothetical protein | phrog_1031 | unknown function | unknown function | 1 | 58119 | 58619 |
| AUX82492.1 | MG839014_p8 | resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 4863 | 5414 |
| AUX82497.1 | MG839014_p13 | hypothetical protein | phrog_2069 | unknown function | unknown function | 1 | 10641 | 10847 |
| AUX82515.1 | MG839014_p31 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 28614 | 30842 |
| AUX82495.1 | MG839014_p11 | portal protein | phrog_776 | portal protein | head and packaging | 1 | 6315 | 8219 |
| AUX82525.1 | MG839014_p41 | hypothetical protein | phrog_892 | tail fiber protein | tail | 1 | 37604 | 38014 |
| AUX82490.1 | MG839014_p6 | terminase | phrog_38 | terminase large subunit | head and packaging | 1 | 2714 | 4474 |
| AUX82536.1 | MG839014_p52 | hypothetical protein | phrog_6400 | unknown function | unknown function | -1 | 46937 | 47299 |
| AUX82563.1 | MG839014_p79 | HNH endonuclease | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 60638 | 60967 |
| AUX82486.1 | MG839014_p2 | hypothetical protein | phrog_6919 | unknown function | unknown function | 1 | 690 | 854 |
| AUX82585.1 | MG839014_p101 | hypothetical protein | phrog_6097 | unknown function | unknown function | 1 | 67872 | 68108 |
| AUX82579.1 | MG839014_p95 | hypothetical protein | phrog_6469 | unknown function | unknown function | -1 | 64719 | 65141 |
| AUX82489.1 | MG839014_p5 | ParB-like nuclease domain protein | phrog_2159 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2148 | 2717 |
| AUX82491.1 | MG839014_p7 | hypothetical protein | phrog_6317 | unknown function | unknown function | -1 | 4615 | 4866 |
| AUX82533.1 | MG839014_p49 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43265 | 44878 |
| AUX82546.1 | MG839014_p62 | hypothetical protein | phrog_6735 | unknown function | unknown function | -1 | 54657 | 54776 |
| AUX82496.1 | MG839014_p12 | capsid morphogenesis protein | phrog_859 | portal protein | head and packaging | 1 | 8209 | 10641 |
| AUX82552.1 | MG839014_p68 | hypothetical protein | phrog_6404 | unknown function | unknown function | 1 | 57178 | 57408 |
| AUX82551.1 | MG839014_p67 | ribbon-helix-helix DNA binding protein | phrog_1016 | unknown function | unknown function | 1 | 56894 | 57181 |
| AUX82521.1 | MG839014_p37 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34930 | 35529 |
| AUX82537.1 | MG839014_p53 | hypothetical protein | phrog_3892 | unknown function | unknown function | -1 | 47299 | 47628 |
| AUX82556.1 | MG839014_p72 | hypothetical protein | phrog_4885 | unknown function | unknown function | 1 | 58626 | 58883 |
| AUX82527.1 | MG839014_p43 | DNA binding protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 38795 | 39031 |
| AUX82526.1 | MG839014_p42 | hypothetical protein | phrog_2804 | virion structural protein | head and packaging | 1 | 38014 | 38739 |
| AUX82554.1 | MG839014_p70 | helix-turn-helix DNA binding protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 57566 | 58165 |
| AUX82485.1 | MG839014_p1 | ParB-like nuclease domain protein | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 693 |
| AUX82524.1 | MG839014_p40 | hypothetical protein | phrog_941 | unknown function | unknown function | 1 | 37263 | 37586 |
| AUX82562.1 | MG839014_p78 | hypothetical protein | phrog_6691 | unknown function | unknown function | -1 | 60360 | 60572 |
| AUX82505.1 | MG839014_p21 | major tail protein | phrog_792 | major tail protein | tail | 1 | 16358 | 17437 |
| AUX82584.1 | MG839014_p100 | hypothetical protein | phrog_5733 | unknown function | unknown function | 1 | 67630 | 67875 |
| AUX82561.1 | MG839014_p77 | hypothetical protein | phrog_4974 | unknown function | unknown function | -1 | 60117 | 60305 |
| AUX82519.1 | MG839014_p35 | hypothetical protein | phrog_948 | unknown function | unknown function | 1 | 33844 | 34269 |
| AUX82506.1 | MG839014_p22 | hypothetical protein | phrog_6514 | unknown function | unknown function | -1 | 17499 | 17609 |
| AUX82542.1 | MG839014_p58 | hypothetical protein | phrog_6482 | unknown function | unknown function | -1 | 53332 | 53607 |
| AUX82504.1 | MG839014_p20 | DNA binding protein | phrog_2525 | unknown function | unknown function | 1 | 15938 | 16270 |
| AUX82574.1 | MG839014_p90 | hypothetical protein | phrog_6199 | unknown function | unknown function | -1 | 63222 | 63581 |
| AUX82499.1 | MG839014_p15 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 13141 | 13950 |
| AUX82500.1 | MG839014_p16 | hypothetical protein | phrog_970 | unknown function | unknown function | 1 | 13965 | 14570 |
| AUX82514.1 | MG839014_p30 | minor tail protein | phrog_837 | minor tail protein | tail | 1 | 27574 | 28617 |
| AUX82576.1 | MG839014_p92 | hypothetical protein | phrog_5411 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 63858 | 64262 |
| AUX82557.1 | MG839014_p73 | hypothetical protein | phrog_1306 | unknown function | unknown function | -1 | 58896 | 59030 |
| AUX82510.1 | MG839014_p26 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 19364 | 19777 |
| AUX82581.1 | MG839014_p97 | hypothetical protein | phrog_1221 | unknown function | unknown function | -1 | 65846 | 66904 |
| AUX82530.1 | MG839014_p46 | lysin A | phrog_700 | endolysin | lysis | 1 | 40271 | 41536 |
| AUX82550.1 | MG839014_p66 | hypothetical protein | phrog_996 | unknown function | unknown function | 1 | 56130 | 56897 |
| AUX82544.1 | MG839014_p60 | hypothetical protein | phrog_3025 | unknown function | unknown function | -1 | 53738 | 54184 |
| AUX82508.1 | MG839014_p24 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 18477 | 18998 |
| AUX82545.1 | MG839014_p61 | hypothetical protein | phrog_993 | unknown function | unknown function | -1 | 54181 | 54660 |
| AUX82568.1 | MG839014_p84 | hypothetical protein | phrog_4392 | unknown function | unknown function | -1 | 61534 | 61887 |