Genomic map of Mycobacterium phage RagingRooster (MG839014)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG839014
Definition
Mycobacterium phage RagingRooster, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus; unclassified Pipefishvirus.
DB of origin
NUCCORE
Length
68670
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
103
%GC
67.57
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUX82566.1 MG839014_p82 hypothetical protein phrog_6460 unknown function unknown function -1 61216 61386
AUX82582.1 MG839014_p98 hypothetical protein phrog_2972 unknown function unknown function -1 67032 67268
AUX82583.1 MG839014_p99 hypothetical protein phrog_4825 unknown function unknown function 1 67446 67619
AUX82567.1 MG839014_p83 hypothetical protein phrog_6338 unknown function unknown function -1 61383 61541
AUX82575.1 MG839014_p91 hypothetical protein phrog_6428 unknown function unknown function -1 63646 63861
AUX82540.1 MG839014_p56 hypothetical protein phrog_6342 unknown function unknown function -1 50778 51518
AUX82586.1 MG839014_p102 hypothetical protein phrog_6432 unknown function unknown function 1 68099 68254
AUX82529.1 MG839014_p45 hypothetical protein phrog_636 unknown function unknown function -1 39510 40208
AUX82522.1 MG839014_p38 hypothetical protein phrog_3329 unknown function unknown function 1 35526 36875
AUX82560.1 MG839014_p76 HNH endonuclease phrog_928 unknown function unknown function 1 59577 60104
AUX82488.1 MG839014_p4 PAPs reductase-like domain protein phrog_2302 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 1069 2151
AUX82547.1 MG839014_p63 hypothetical protein phrog_6656 unknown function unknown function -1 54813 55043
AUX82559.1 MG839014_p75 hypothetical protein phrog_6229 unknown function unknown function 1 59248 59595
AUX82494.1 MG839014_p10 membrane protein phrog_781 unknown function unknown function 1 5950 6285
AUX82523.1 MG839014_p39 hypothetical protein phrog_915 unknown function unknown function 1 36898 37266
AUX82578.1 MG839014_p94 hypothetical protein phrog_6114 unknown function unknown function -1 64543 64722
AUX82534.1 MG839014_p50 hypothetical protein phrog_7519 unknown function unknown function -1 44878 45057
AUX82511.1 MG839014_p27 hypothetical protein phrog_1118 tail assembly chaperone tail 1 19777 20370
AUX82558.1 MG839014_p74 hypothetical protein phrog_6511 unknown function unknown function 1 59085 59237
AUX82516.1 MG839014_p32 minor tail protein phrog_356 minor tail protein tail 1 30844 32226
AUX82569.1 MG839014_p85 hypothetical protein phrog_7541 unknown function unknown function -1 61887 62219
AUX82498.1 MG839014_p14 major capsid protein phrog_777 major head protein head and packaging 1 11027 13042
AUX82487.1 MG839014_p3 hypothetical protein phrog_6307 unknown function unknown function 1 851 1072
AUX82538.1 MG839014_p54 hypothetical protein phrog_1371 unknown function unknown function -1 47625 48098
AUX82580.1 MG839014_p96 hypothetical protein phrog_1010 unknown function unknown function -1 65284 65772
AUX82531.1 MG839014_p47 lysin B phrog_102 endolysin lysis 1 41537 42601
AUX82587.1 MG839014_p103 hypothetical protein phrog_5930 unknown function unknown function 1 68319 68621
AUX82549.1 MG839014_p65 hypothetical protein phrog_982 unknown function unknown function -1 55467 55736
AUX82565.1 MG839014_p81 hypothetical protein phrog_6304 unknown function unknown function -1 61055 61219
AUX82543.1 MG839014_p59 hypothetical protein phrog_6936 unknown function unknown function -1 53604 53741
AUX82553.1 MG839014_p69 hypothetical protein phrog_4938 unknown function unknown function 1 57405 57569
AUX82573.1 MG839014_p89 hypothetical protein phrog_5355 unknown function unknown function -1 62991 63146
AUX82539.1 MG839014_p55 DNA recombinase phrog_906 DNA polymerase/primase DNA, RNA and nucleotide metabolism -1 48141 50744
AUX82571.1 MG839014_p87 hypothetical protein phrog_7490 unknown function unknown function -1 62500 62688
AUX82564.1 MG839014_p80 hypothetical protein phrog_4461 unknown function unknown function -1 60960 61058
AUX82512.1 MG839014_p28 tape measure protein phrog_934 tail length tape measure protein tail 1 20396 26137
AUX82532.1 MG839014_p48 hypothetical protein phrog_870 unknown function unknown function -1 42671 43216
AUX82517.1 MG839014_p33 minor tail protein phrog_416 minor tail protein tail 1 32223 33425
AUX82503.1 MG839014_p19 hypothetical protein phrog_2344 unknown function unknown function 1 15462 15941
AUX82577.1 MG839014_p93 hypothetical protein phrog_2903 unknown function unknown function -1 64262 64543
AUX82520.1 MG839014_p36 hypothetical protein phrog_282 unknown function unknown function 1 34280 34933
AUX82509.1 MG839014_p25 hypothetical protein phrog_901 unknown function unknown function 1 19009 19380
AUX82507.1 MG839014_p23 hypothetical protein phrog_783 head-tail adaptor connector 1 17722 18480
AUX82528.1 MG839014_p44 helix-turn-helix DNA binding protein phrog_955 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 39028 39513
AUX82548.1 MG839014_p64 hypothetical protein phrog_6105 unknown function unknown function -1 55040 55390
AUX82502.1 MG839014_p18 hypothetical protein phrog_2272 unknown function unknown function 1 15004 15465
AUX82570.1 MG839014_p86 hypothetical protein phrog_7414 unknown function unknown function -1 62216 62503
AUX82572.1 MG839014_p88 HicA-like toxin phrog_2089 unknown function unknown function -1 62782 62994
AUX82513.1 MG839014_p29 minor tail protein phrog_838 unknown function unknown function 1 26147 27577
AUX82501.1 MG839014_p17 hypothetical protein phrog_565 holin lysis 1 14567 15001
AUX82493.1 MG839014_p9 hypothetical protein phrog_6276 unknown function unknown function -1 5549 5845
AUX82518.1 MG839014_p34 hypothetical protein phrog_240 head protein head and packaging 1 33452 33835
AUX82535.1 MG839014_p51 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 45145 46842
AUX82541.1 MG839014_p57 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 51515 53332
AUX82555.1 MG839014_p71 hypothetical protein phrog_1031 unknown function unknown function 1 58119 58619
AUX82492.1 MG839014_p8 resolvase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 4863 5414
AUX82497.1 MG839014_p13 hypothetical protein phrog_2069 unknown function unknown function 1 10641 10847
AUX82515.1 MG839014_p31 minor tail protein phrog_746 minor tail protein tail 1 28614 30842
AUX82495.1 MG839014_p11 portal protein phrog_776 portal protein head and packaging 1 6315 8219
AUX82525.1 MG839014_p41 hypothetical protein phrog_892 tail fiber protein tail 1 37604 38014
AUX82490.1 MG839014_p6 terminase phrog_38 terminase large subunit head and packaging 1 2714 4474
AUX82536.1 MG839014_p52 hypothetical protein phrog_6400 unknown function unknown function -1 46937 47299
AUX82563.1 MG839014_p79 HNH endonuclease phrog_960 HNH endonuclease DNA, RNA and nucleotide metabolism -1 60638 60967
AUX82486.1 MG839014_p2 hypothetical protein phrog_6919 unknown function unknown function 1 690 854
AUX82585.1 MG839014_p101 hypothetical protein phrog_6097 unknown function unknown function 1 67872 68108
AUX82579.1 MG839014_p95 hypothetical protein phrog_6469 unknown function unknown function -1 64719 65141
AUX82489.1 MG839014_p5 ParB-like nuclease domain protein phrog_2159 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 2148 2717
AUX82491.1 MG839014_p7 hypothetical protein phrog_6317 unknown function unknown function -1 4615 4866
AUX82533.1 MG839014_p49 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism -1 43265 44878
AUX82546.1 MG839014_p62 hypothetical protein phrog_6735 unknown function unknown function -1 54657 54776
AUX82496.1 MG839014_p12 capsid morphogenesis protein phrog_859 portal protein head and packaging 1 8209 10641
AUX82552.1 MG839014_p68 hypothetical protein phrog_6404 unknown function unknown function 1 57178 57408
AUX82551.1 MG839014_p67 ribbon-helix-helix DNA binding protein phrog_1016 unknown function unknown function 1 56894 57181
AUX82521.1 MG839014_p37 hypothetical protein phrog_282 unknown function unknown function 1 34930 35529
AUX82537.1 MG839014_p53 hypothetical protein phrog_3892 unknown function unknown function -1 47299 47628
AUX82556.1 MG839014_p72 hypothetical protein phrog_4885 unknown function unknown function 1 58626 58883
AUX82527.1 MG839014_p43 DNA binding protein phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 38795 39031
AUX82526.1 MG839014_p42 hypothetical protein phrog_2804 virion structural protein head and packaging 1 38014 38739
AUX82554.1 MG839014_p70 helix-turn-helix DNA binding protein phrog_645 Rnase E DNA, RNA and nucleotide metabolism 1 57566 58165
AUX82485.1 MG839014_p1 ParB-like nuclease domain protein phrog_723 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 1 693
AUX82524.1 MG839014_p40 hypothetical protein phrog_941 unknown function unknown function 1 37263 37586
AUX82562.1 MG839014_p78 hypothetical protein phrog_6691 unknown function unknown function -1 60360 60572
AUX82505.1 MG839014_p21 major tail protein phrog_792 major tail protein tail 1 16358 17437
AUX82584.1 MG839014_p100 hypothetical protein phrog_5733 unknown function unknown function 1 67630 67875
AUX82561.1 MG839014_p77 hypothetical protein phrog_4974 unknown function unknown function -1 60117 60305
AUX82519.1 MG839014_p35 hypothetical protein phrog_948 unknown function unknown function 1 33844 34269
AUX82506.1 MG839014_p22 hypothetical protein phrog_6514 unknown function unknown function -1 17499 17609
AUX82542.1 MG839014_p58 hypothetical protein phrog_6482 unknown function unknown function -1 53332 53607
AUX82504.1 MG839014_p20 DNA binding protein phrog_2525 unknown function unknown function 1 15938 16270
AUX82574.1 MG839014_p90 hypothetical protein phrog_6199 unknown function unknown function -1 63222 63581
AUX82499.1 MG839014_p15 hypothetical protein phrog_779 unknown function unknown function 1 13141 13950
AUX82500.1 MG839014_p16 hypothetical protein phrog_970 unknown function unknown function 1 13965 14570
AUX82514.1 MG839014_p30 minor tail protein phrog_837 minor tail protein tail 1 27574 28617
AUX82576.1 MG839014_p92 hypothetical protein phrog_5411 HNH endonuclease DNA, RNA and nucleotide metabolism -1 63858 64262
AUX82557.1 MG839014_p73 hypothetical protein phrog_1306 unknown function unknown function -1 58896 59030
AUX82510.1 MG839014_p26 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 19364 19777
AUX82581.1 MG839014_p97 hypothetical protein phrog_1221 unknown function unknown function -1 65846 66904
AUX82530.1 MG839014_p46 lysin A phrog_700 endolysin lysis 1 40271 41536
AUX82550.1 MG839014_p66 hypothetical protein phrog_996 unknown function unknown function 1 56130 56897
AUX82544.1 MG839014_p60 hypothetical protein phrog_3025 unknown function unknown function -1 53738 54184
AUX82508.1 MG839014_p24 hypothetical protein phrog_810 unknown function unknown function 1 18477 18998
AUX82545.1 MG839014_p61 hypothetical protein phrog_993 unknown function unknown function -1 54181 54660
AUX82568.1 MG839014_p84 hypothetical protein phrog_4392 unknown function unknown function -1 61534 61887