Genomic map of Pseudomonas phage phiNV3 (MG845683)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG845683
Definition
Pseudomonas phage phiNV3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Kirikabuvirus; Pseudomonas virus NV3.
DB of origin
NUCCORE
Length
43184
Host Name
Pseudomonas agarici
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
58.29
Number of singletons
16
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVH86147.1 MG845683_p38 internal core protein phrog_342 internal virion protein with endolysin domain head and packaging 1 32390 36322
AVH86126.1 MG845683_p16 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 9913 10812
AVH86151.1 MG845683_p42 DNA maturase B phrog_38 terminase large subunit head and packaging 1 39529 41301
AVH86116.1 MG845683_p6 hypothetical protein singleton unknown function unknown function 1 4489 4737
AVH86136.1 MG845683_p27 hypothetical protein phrog_6575 unknown function unknown function 1 21028 21273
AVH86114.1 MG845683_p3 hypothetical protein singleton unknown function unknown function 1 3424 3639
AVH86155.1 MG845683_p46 Rz1-like protein singleton unknown function unknown function 1 42165 42410
AVH86127.1 MG845683_p17 hypothetical protein singleton unknown function unknown function 1 10897 11223
AVH86111.1 MG845683_p1 hypothetical protein phrog_24696 unknown function unknown function 1 2302 2688
AVH86137.1 MG845683_p28 hypothetical protein phrog_3986 unknown function unknown function 1 21270 21701
AVH86152.1 MG845683_p43 pinholin phrog_6597 holin lysis 1 41303 41542
AVH86140.1 MG845683_p31 head-tail connector protein phrog_449 head-tail adaptor connector 1 22510 24048
AVH86141.1 MG845683_p32 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 24048 25013
AVH86144.1 MG845683_p35 tail tubular protein B phrog_457 tail protein tail 1 26712 29183
AVH86157.1 MG845683_p48 hypothetical protein singleton unknown function unknown function 1 42729 42911
AVH86120.1 MG845683_p10 hypothetical protein phrog_5433 unknown function unknown function 1 5436 5891
AVH86156.1 MG845683_p47 hypothetical protein singleton unknown function unknown function 1 42410 42715
AVH86132.1 MG845683_p23 DNA exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 16432 17652
AVH86112.1 MG845683_p2 hypothetical protein phrog_1448 unknown function unknown function 1 2900 3427
AVH86123.1 MG845683_p13 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7159 7995
AVH86125.1 MG845683_p15 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 9350 9913
AVH86154.1 MG845683_p45 Rz-like protein phrog_214 Rz-like spanin lysis 1 41975 42307
AVH86128.1 MG845683_p19 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11583 13943
AVH86146.1 MG845683_p37 baseplate hub subunit and tail lysozyme phrog_2083 internal virion lysozyme motif head and packaging 1 29721 32381
AVH86131.1 MG845683_p22 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 15948 16424
AVH86115.1 MG845683_p5 hypothetical protein singleton unknown function unknown function 1 4140 4499
AVH86134.1 MG845683_p25 hypothetical protein singleton unknown function unknown function 1 18088 18270
AVH86119.1 MG845683_p9 hypothetical protein singleton unknown function unknown function 1 5218 5406
AVH86113.1 MG845683_p4 hypothetical protein phrog_10949 unknown function unknown function 1 3867 4079
AVH86117.1 MG845683_p7 hypothetical protein singleton unknown function unknown function 1 4730 4918
AVH86133.1 MG845683_p24 hypothetical protein singleton unknown function unknown function 1 17663 18091
AVH86148.1 MG845683_p39 tail protein phrog_1640 tail protein tail 1 36323 38689
AVH86153.1 MG845683_p44 lysozyme phrog_7 endolysin lysis 1 41526 42026
AVH86129.1 MG845683_p20 hypothetical protein phrog_862 unknown function unknown function 1 13990 15006
AVH86118.1 MG845683_p8 hypothetical protein singleton unknown function unknown function 1 4915 5172
AVH86122.1 MG845683_p12 hypothetical protein phrog_2563 unknown function unknown function 1 6641 7135
AVH86121.1 MG845683_p11 hypothetical protein singleton unknown function unknown function 1 6014 6457
AVH86142.1 MG845683_p33 capsid protein phrog_267 major head protein head and packaging 1 25069 26061
AVH86158.1 MG845683_p18 hypothetical protein singleton unknown function unknown function 1 11322 11522
AVH86149.1 MG845683_p40 hypothetical protein singleton unknown function unknown function 1 38640 38936
AVH86130.1 MG845683_p21 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15008 15967
AVH86143.1 MG845683_p34 tail tubular protein A phrog_446 tail protein tail 1 26161 26715
AVH86138.1 MG845683_p29 DNA endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21679 22149
AVH86150.1 MG845683_p41 DNA maturase A phrog_891 terminase small subunit head and packaging 1 39215 39532
AVH86124.1 MG845683_p14 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8047 9357
AVH86135.1 MG845683_p26 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 18414 20870
AVH86145.1 MG845683_p36 internal virion protein A phrog_805 internal virion protein head and packaging 1 29183 29728
AVH86139.1 MG845683_p30 structural protein singleton unknown function unknown function 1 22363 22500