| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG845683 |
Definition |
Pseudomonas phage phiNV3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Kirikabuvirus; Pseudomonas virus NV3. |
DB of origin |
NUCCORE |
Length |
43184 |
Host Name |
Pseudomonas agarici |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
58.29 |
Number of singletons |
16 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVH86147.1 | MG845683_p38 | internal core protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32390 | 36322 |
| AVH86126.1 | MG845683_p16 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 9913 | 10812 |
| AVH86151.1 | MG845683_p42 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 39529 | 41301 |
| AVH86116.1 | MG845683_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4489 | 4737 |
| AVH86136.1 | MG845683_p27 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 21028 | 21273 |
| AVH86114.1 | MG845683_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3424 | 3639 |
| AVH86155.1 | MG845683_p46 | Rz1-like protein | singleton | unknown function | unknown function | 1 | 42165 | 42410 |
| AVH86127.1 | MG845683_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10897 | 11223 |
| AVH86111.1 | MG845683_p1 | hypothetical protein | phrog_24696 | unknown function | unknown function | 1 | 2302 | 2688 |
| AVH86137.1 | MG845683_p28 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 21270 | 21701 |
| AVH86152.1 | MG845683_p43 | pinholin | phrog_6597 | holin | lysis | 1 | 41303 | 41542 |
| AVH86140.1 | MG845683_p31 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 22510 | 24048 |
| AVH86141.1 | MG845683_p32 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 24048 | 25013 |
| AVH86144.1 | MG845683_p35 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26712 | 29183 |
| AVH86157.1 | MG845683_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42729 | 42911 |
| AVH86120.1 | MG845683_p10 | hypothetical protein | phrog_5433 | unknown function | unknown function | 1 | 5436 | 5891 |
| AVH86156.1 | MG845683_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42410 | 42715 |
| AVH86132.1 | MG845683_p23 | DNA exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 16432 | 17652 |
| AVH86112.1 | MG845683_p2 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2900 | 3427 |
| AVH86123.1 | MG845683_p13 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7159 | 7995 |
| AVH86125.1 | MG845683_p15 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9350 | 9913 |
| AVH86154.1 | MG845683_p45 | Rz-like protein | phrog_214 | Rz-like spanin | lysis | 1 | 41975 | 42307 |
| AVH86128.1 | MG845683_p19 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11583 | 13943 |
| AVH86146.1 | MG845683_p37 | baseplate hub subunit and tail lysozyme | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29721 | 32381 |
| AVH86131.1 | MG845683_p22 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 15948 | 16424 |
| AVH86115.1 | MG845683_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4140 | 4499 |
| AVH86134.1 | MG845683_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18088 | 18270 |
| AVH86119.1 | MG845683_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5218 | 5406 |
| AVH86113.1 | MG845683_p4 | hypothetical protein | phrog_10949 | unknown function | unknown function | 1 | 3867 | 4079 |
| AVH86117.1 | MG845683_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4730 | 4918 |
| AVH86133.1 | MG845683_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17663 | 18091 |
| AVH86148.1 | MG845683_p39 | tail protein | phrog_1640 | tail protein | tail | 1 | 36323 | 38689 |
| AVH86153.1 | MG845683_p44 | lysozyme | phrog_7 | endolysin | lysis | 1 | 41526 | 42026 |
| AVH86129.1 | MG845683_p20 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 13990 | 15006 |
| AVH86118.1 | MG845683_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4915 | 5172 |
| AVH86122.1 | MG845683_p12 | hypothetical protein | phrog_2563 | unknown function | unknown function | 1 | 6641 | 7135 |
| AVH86121.1 | MG845683_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6014 | 6457 |
| AVH86142.1 | MG845683_p33 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 25069 | 26061 |
| AVH86158.1 | MG845683_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11322 | 11522 |
| AVH86149.1 | MG845683_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38640 | 38936 |
| AVH86130.1 | MG845683_p21 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15008 | 15967 |
| AVH86143.1 | MG845683_p34 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 26161 | 26715 |
| AVH86138.1 | MG845683_p29 | DNA endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21679 | 22149 |
| AVH86150.1 | MG845683_p41 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 39215 | 39532 |
| AVH86124.1 | MG845683_p14 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8047 | 9357 |
| AVH86135.1 | MG845683_p26 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18414 | 20870 |
| AVH86145.1 | MG845683_p36 | internal virion protein A | phrog_805 | internal virion protein | head and packaging | 1 | 29183 | 29728 |
| AVH86139.1 | MG845683_p30 | structural protein | singleton | unknown function | unknown function | 1 | 22363 | 22500 |