| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG872833 |
Definition |
Mycobacterium phage BeesKnees, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
51702 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
63.71 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVI03617.1 | MG872833_p81 | DNA binding protein | phrog_2093 | unknown function | unknown function | -1 | 46752 | 46880 |
| AVI03625.1 | MG872833_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49438 | 49557 |
| AVI03567.1 | MG872833_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24150 | 26003 |
| AVI03550.1 | MG872833_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11119 | 11631 |
| AVI03541.1 | MG872833_p5 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 3082 | 3771 |
| AVI03585.1 | MG872833_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35788 | 35994 |
| AVI03603.1 | MG872833_p67 | helix-turn-helix DNA binding domain protein | phrog_520 | unknown function | unknown function | -1 | 41710 | 42003 |
| AVI03548.1 | MG872833_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8740 | 10182 |
| AVI03556.1 | MG872833_p20 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 14165 | 14611 |
| AVI03592.1 | MG872833_p56 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38611 | 39132 |
| AVI03559.1 | MG872833_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15580 | 16379 |
| AVI03599.1 | MG872833_p63 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40390 | 40665 |
| AVI03614.1 | MG872833_p78 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 46200 | 46403 |
| AVI03607.1 | MG872833_p71 | DNA binding protein | phrog_5961 | unknown function | unknown function | -1 | 43113 | 43271 |
| AVI03540.1 | MG872833_p4 | minor tail protein | phrog_1197 | tail protein | tail | 1 | 2002 | 3072 |
| AVI03610.1 | MG872833_p74 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 44427 | 44822 |
| AVI03586.1 | MG872833_p50 | helix-turn-helix DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35991 | 36776 |
| AVI03557.1 | MG872833_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14620 | 15468 |
| AVI03576.1 | MG872833_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31523 | 31618 |
| AVI03590.1 | MG872833_p54 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37881 | 38051 |
| AVI03569.1 | MG872833_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27567 | 27887 |
| AVI03546.1 | MG872833_p10 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 6720 | 7034 |
| AVI03568.1 | MG872833_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25996 | 27474 |
| AVI03597.1 | MG872833_p61 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39844 | 40320 |
| AVI03616.1 | MG872833_p80 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46588 | 46755 |
| AVI03587.1 | MG872833_p51 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 36769 | 36978 |
| AVI03549.1 | MG872833_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10179 | 11060 |
| AVI03579.1 | MG872833_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32201 | 32584 |
| AVI03626.1 | MG872833_p90 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49745 | 49945 |
| AVI03601.1 | MG872833_p65 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40771 | 41580 |
| AVI03628.1 | MG872833_p92 | membrane protein | phrog_2212 | unknown function | unknown function | -1 | 50292 | 50390 |
| AVI03600.1 | MG872833_p64 | membrane protein | phrog_5742 | unknown function | unknown function | -1 | 40672 | 40770 |
| AVI03588.1 | MG872833_p52 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36975 | 37112 |
| AVI03612.1 | MG872833_p76 | membrane protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45638 | 45937 |
| AVI03621.1 | MG872833_p85 | hypothetical protein | phrog_5798 | unknown function | unknown function | -1 | 47454 | 47717 |
| AVI03583.1 | MG872833_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34954 | 35448 |
| AVI03608.1 | MG872833_p72 | exonuclease/helicase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43299 | 44123 |
| AVI03542.1 | MG872833_p6 | minor tail protein | phrog_1718 | tail protein | tail | 1 | 3782 | 4042 |
| AVI03577.1 | MG872833_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31615 | 31917 |
| AVI03563.1 | MG872833_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21151 | 22953 |
| AVI03602.1 | MG872833_p66 | membrane protein | phrog_1705 | unknown function | unknown function | -1 | 41567 | 41713 |
| AVI03555.1 | MG872833_p19 | head-to-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13766 | 14161 |
| AVI03554.1 | MG872833_p18 | head-to-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13404 | 13766 |
| AVI03582.1 | MG872833_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34681 | 34911 |
| AVI03627.1 | MG872833_p91 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 49942 | 50271 |
| AVI03551.1 | MG872833_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11641 | 12642 |
| AVI03560.1 | MG872833_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16392 | 18869 |
| AVI03609.1 | MG872833_p73 | membrane protein | phrog_1584 | unknown function | unknown function | -1 | 44116 | 44430 |
| AVI03572.1 | MG872833_p36 | membrane protein | phrog_411 | unknown function | unknown function | 1 | 29015 | 29311 |
| AVI03573.1 | MG872833_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29463 | 30965 |
| AVI03589.1 | MG872833_p53 | MRE11 double-strand break endo/exonuclease | phrog_221 | metallo-phosphoesterase | other | -1 | 37117 | 37884 |
| AVI03562.1 | MG872833_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 20969 | 21151 |
| AVI03544.1 | MG872833_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4307 | 5740 |
| AVI03574.1 | MG872833_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31087 | 31359 |
| AVI03624.1 | MG872833_p88 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 49025 | 49309 |
| AVI03598.1 | MG872833_p62 | membrane protein | phrog_1019 | unknown function | unknown function | -1 | 40307 | 40393 |
| AVI03558.1 | MG872833_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15580 | 15957 |
| AVI03580.1 | MG872833_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32581 | 34407 |
| AVI03564.1 | MG872833_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 22991 | 23437 |
| AVI03596.1 | MG872833_p60 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39713 | 39847 |
| AVI03630.1 | MG872833_p94 | membrane protein | phrog_828 | unknown function | unknown function | -1 | 50878 | 51081 |
| AVI03578.1 | MG872833_p42 | hypothetical protein | phrog_9812 | unknown function | unknown function | -1 | 31914 | 32165 |
| AVI03553.1 | MG872833_p17 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12955 | 13404 |
| AVI03629.1 | MG872833_p93 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 50468 | 50722 |
| AVI03613.1 | MG872833_p77 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 45934 | 46203 |
| AVI03593.1 | MG872833_p57 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38978 | 39493 |
| AVI03571.1 | MG872833_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28085 | 28894 |
| AVI03618.1 | MG872833_p82 | hypothetical protein | phrog_9026 | unknown function | unknown function | -1 | 46877 | 47089 |
| AVI03591.1 | MG872833_p55 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38048 | 38614 |
| AVI03543.1 | MG872833_p7 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4050 | 4307 |
| AVI03581.1 | MG872833_p45 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 34430 | 34684 |
| AVI03594.1 | MG872833_p58 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39472 | 39636 |
| AVI03537.1 | MG872833_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 602 | 754 |
| AVI03552.1 | MG872833_p16 | head-to-tail connector | phrog_1857 | head-tail connector protein | connector | 1 | 12728 | 12955 |
| AVI03615.1 | MG872833_p79 | membrane protein | phrog_1155 | unknown function | unknown function | -1 | 46400 | 46588 |
| AVI03631.1 | MG872833_p95 | DNA binding protein | phrog_11359 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 51136 | 51309 |
| AVI03565.1 | MG872833_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23434 | 23781 |
| AVI03570.1 | MG872833_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27897 | 28088 |
| AVI03538.1 | MG872833_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 751 | 1047 |
| AVI03539.1 | MG872833_p3 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 1082 | 1516 |
| AVI03605.1 | MG872833_p69 | helix-turn-helix DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42324 | 42506 |
| AVI03561.1 | MG872833_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18893 | 20950 |
| AVI03547.1 | MG872833_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7055 | 8743 |
| AVI03606.1 | MG872833_p70 | DNA methylase | phrog_111 | DNA methyltransferase | other | -1 | 42551 | 43060 |
| AVI03619.1 | MG872833_p83 | DnaJ-like chaperonin | phrog_15035 | unknown function | unknown function | -1 | 47086 | 47280 |
| AVI03545.1 | MG872833_p9 | lysin B | phrog_102 | endolysin | lysis | 1 | 5730 | 6698 |
| AVI03575.1 | MG872833_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31356 | 31526 |
| AVI03623.1 | MG872833_p87 | hypothetical protein | phrog_4958 | unknown function | unknown function | -1 | 48689 | 48973 |
| AVI03604.1 | MG872833_p68 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42000 | 42245 |
| AVI03611.1 | MG872833_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44864 | 45376 |
| AVI03622.1 | MG872833_p86 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 48004 | 48684 |
| AVI03566.1 | MG872833_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 23778 | 24125 |
| AVI03620.1 | MG872833_p84 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 47305 | 47457 |
| AVI03584.1 | MG872833_p48 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 35483 | 35788 |
| AVI03595.1 | MG872833_p59 | membrane protein | singleton | unknown function | unknown function | -1 | 39636 | 39716 |