| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG872834 |
Definition |
Gordonia phage Confidence, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
50646 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
66.35 |
Number of singletons |
8 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVI03675.1 | MG872834_p45 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 33363 | 34235 |
| AVI03667.1 | MG872834_p37 | integrase | phrog_1 | integrase | integration and excision | 1 | 29321 | 30403 |
| AVI03662.1 | MG872834_p31 | hypothetical protein | phrog_15183 | unknown function | unknown function | 1 | 26960 | 27280 |
| AVI03634.1 | MG872834_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2281 | 3729 |
| AVI03688.1 | MG872834_p58 | ssDNA binding protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39325 | 40473 |
| AVI03656.1 | MG872834_p25 | membrane protein | phrog_10261 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 21361 | 21819 |
| AVI03644.1 | MG872834_p13 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 8263 | 8649 |
| AVI03648.1 | MG872834_p17 | hypothetical protein | phrog_19756 | unknown function | unknown function | -1 | 10494 | 10949 |
| AVI03638.1 | MG872834_p7 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 5700 | 6740 |
| AVI03669.1 | MG872834_p39 | HicA-like toxin | singleton | unknown function | unknown function | -1 | 30632 | 30772 |
| AVI03633.1 | MG872834_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 485 | 2284 |
| AVI03691.1 | MG872834_p61 | hypothetical protein | phrog_10682 | unknown function | unknown function | 1 | 41167 | 41355 |
| AVI03653.1 | MG872834_p22 | lysin A | phrog_2998 | endolysin | lysis | 1 | 19669 | 20769 |
| AVI03698.1 | MG872834_p68 | hypothetical protein | phrog_17296 | unknown function | unknown function | 1 | 44604 | 45023 |
| AVI03683.1 | MG872834_p53 | hypothetical protein | phrog_210 | unknown function | unknown function | 1 | 36720 | 37613 |
| AVI03632.1 | MG872834_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 82 | 504 |
| AVI03635.1 | MG872834_p4 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3710 | 4522 |
| AVI03702.1 | MG872834_p72 | hypothetical protein | phrog_11256 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 46779 | 47603 |
| AVI03709.1 | MG872834_p79 | hypothetical protein | phrog_31833 | unknown function | unknown function | 1 | 50116 | 50301 |
| AVI03707.1 | MG872834_p77 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 49429 | 49755 |
| AVI03692.1 | MG872834_p62 | nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 41352 | 42137 |
| AVI03645.1 | MG872834_p14 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8711 | 9556 |
| AVI03661.1 | MG872834_p30 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 26683 | 26910 |
| AVI03652.1 | MG872834_p21 | hypothetical protein | phrog_17401 | unknown function | unknown function | 1 | 19266 | 19601 |
| AVI03701.1 | MG872834_p71 | hypothetical protein | phrog_6055 | unknown function | unknown function | 1 | 46288 | 46782 |
| AVI03710.1 | MG872834_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27302 | 27379 |
| AVI03650.1 | MG872834_p19 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16655 | 17563 |
| AVI03679.1 | MG872834_p49 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 35366 | 35653 |
| AVI03681.1 | MG872834_p51 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 35894 | 36283 |
| AVI03690.1 | MG872834_p60 | hypothetical protein | phrog_10709 | unknown function | unknown function | 1 | 40997 | 41170 |
| AVI03654.1 | MG872834_p23 | hypothetical protein | phrog_443 | holin | lysis | 1 | 20796 | 21032 |
| AVI03649.1 | MG872834_p18 | tape measure protein | phrog_10780 | tail length tape measure protein | tail | 1 | 10997 | 16651 |
| AVI03660.1 | MG872834_p29 | hypothetical protein | phrog_17388 | minor tail protein | tail | 1 | 24635 | 26650 |
| AVI03708.1 | MG872834_p78 | hypothetical protein | phrog_26578 | unknown function | unknown function | 1 | 49927 | 50109 |
| AVI03647.1 | MG872834_p15 | tail assembly chaperone | phrog_28033 | tail assembly chaperone | tail | 1 | 9683 | 10497 |
| AVI03694.1 | MG872834_p64 | HTH DNA binding protein | phrog_1590 | unknown function | unknown function | 1 | 42274 | 43167 |
| AVI03704.1 | MG872834_p74 | hypothetical protein | phrog_14446 | unknown function | unknown function | 1 | 47962 | 48363 |
| AVI03646.1 | MG872834_p16 | tail assembly chaperone | phrog_23607 | tail assembly chaperone | tail | 1 | 9683 | 10090 |
| AVI03685.1 | MG872834_p55 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 37810 | 38172 |
| AVI03674.1 | MG872834_p44 | hypothetical protein | phrog_12920 | unknown function | unknown function | 1 | 32986 | 33315 |
| AVI03676.1 | MG872834_p46 | hypothetical protein | phrog_2233 | unknown function | unknown function | 1 | 34232 | 34837 |
| AVI03671.1 | MG872834_p41 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 31246 | 31704 |
| AVI03682.1 | MG872834_p52 | hypothetical protein | phrog_204 | unknown function | unknown function | 1 | 36375 | 36716 |
| AVI03677.1 | MG872834_p47 | hypothetical protein | phrog_5253 | unknown function | unknown function | 1 | 34834 | 35145 |
| AVI03678.1 | MG872834_p48 | hypothetical protein | phrog_7723 | unknown function | unknown function | 1 | 35142 | 35369 |
| AVI03700.1 | MG872834_p70 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45341 | 46291 |
| AVI03695.1 | MG872834_p65 | hypothetical protein | phrog_2045 | unknown function | unknown function | 1 | 43164 | 44039 |
| AVI03689.1 | MG872834_p59 | hypothetical protein | phrog_15664 | unknown function | unknown function | 1 | 40470 | 40988 |
| AVI03670.1 | MG872834_p40 | hypothetical protein | phrog_5316 | unknown function | unknown function | -1 | 31037 | 31228 |
| AVI03672.1 | MG872834_p42 | immunity repressor | phrog_19579 | transcriptional regulator | transcription regulation | -1 | 31755 | 32507 |
| AVI03680.1 | MG872834_p50 | hypothetical protein | phrog_9213 | unknown function | unknown function | 1 | 35650 | 35865 |
| AVI03665.1 | MG872834_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27879 | 28004 |
| AVI03640.1 | MG872834_p9 | head-to-tail connector complex protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 7080 | 7481 |
| AVI03657.1 | MG872834_p26 | lysin B | phrog_102 | endolysin | lysis | 1 | 21821 | 22441 |
| AVI03637.1 | MG872834_p6 | capsid decoration protein | phrog_3583 | head decoration | head and packaging | 1 | 5303 | 5686 |
| AVI03636.1 | MG872834_p5 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 4598 | 5254 |
| AVI03658.1 | MG872834_p27 | hypothetical protein | phrog_737 | minor tail protein | tail | 1 | 22438 | 24309 |
| AVI03703.1 | MG872834_p73 | resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47600 | 47965 |
| AVI03663.1 | MG872834_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27424 | 27561 |
| AVI03706.1 | MG872834_p76 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 48755 | 49432 |
| AVI03639.1 | MG872834_p8 | hypothetical protein | phrog_14250 | unknown function | unknown function | 1 | 6755 | 7111 |
| AVI03655.1 | MG872834_p24 | membrane protein | phrog_11800 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 21095 | 21364 |
| AVI03651.1 | MG872834_p20 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17560 | 19266 |
| AVI03668.1 | MG872834_p38 | HicB-like antitoxin | singleton | unknown function | unknown function | -1 | 30415 | 30642 |
| AVI03686.1 | MG872834_p56 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 38169 | 38468 |
| AVI03673.1 | MG872834_p43 | HTH DNA binding protein | phrog_3642 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 32753 | 32989 |
| AVI03696.1 | MG872834_p66 | hypothetical protein | phrog_26108 | unknown function | unknown function | 1 | 44039 | 44239 |
| AVI03642.1 | MG872834_p11 | hypothetical protein | phrog_31765 | unknown function | unknown function | 1 | 7837 | 8025 |
| AVI03697.1 | MG872834_p67 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 44239 | 44604 |
| AVI03641.1 | MG872834_p10 | head-to-tail connector complex protein | phrog_763 | head-tail adaptor | connector | 1 | 7478 | 7825 |
| AVI03705.1 | MG872834_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48360 | 48758 |
| AVI03699.1 | MG872834_p69 | hypothetical protein | phrog_10621 | unknown function | unknown function | 1 | 45016 | 45225 |
| AVI03643.1 | MG872834_p12 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 8009 | 8266 |
| AVI03684.1 | MG872834_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37610 | 37813 |
| AVI03666.1 | MG872834_p36 | integrase | phrog_1 | integrase | integration and excision | 1 | 28133 | 29050 |
| AVI03664.1 | MG872834_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27619 | 27807 |
| AVI03687.1 | MG872834_p57 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 38465 | 39328 |
| AVI03693.1 | MG872834_p63 | hypothetical protein | phrog_7793 | unknown function | unknown function | 1 | 42119 | 42277 |
| AVI03659.1 | MG872834_p28 | hypothetical protein | phrog_8055 | unknown function | unknown function | 1 | 24306 | 24635 |