| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG872837 |
Definition |
Mycobacterium phage Gage, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
NUCCORE |
Length |
71650 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
135 |
%GC |
63.19 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVI03912.1 | MG872837_p17 | head-to-tail connector | phrog_1531 | head closure | connector | 1 | 9714 | 10049 |
| AVI03997.1 | MG872837_p104 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 60933 | 61130 |
| AVI03932.1 | MG872837_p37 | lysin B | phrog_102 | endolysin | lysis | 1 | 31848 | 32705 |
| AVI03955.1 | MG872837_p60 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 40854 | 41699 |
| AVI03964.1 | MG872837_p70 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45309 | 45719 |
| AVI03903.1 | MG872837_p8 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1917 | 2156 |
| AVI03956.1 | MG872837_p61 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 41701 | 41847 |
| AVI04011.1 | MG872837_p119 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 66723 | 66977 |
| AVI03899.1 | MG872837_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| AVI03980.1 | MG872837_p86 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 51963 | 52181 |
| AVI03928.1 | MG872837_p33 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29273 | 29557 |
| AVI03938.1 | MG872837_p43 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 34656 | 34910 |
| AVI03981.1 | MG872837_p87 | hypothetical protein | phrog_1503 | unknown function | unknown function | 1 | 52178 | 52405 |
| AVI03969.1 | MG872837_p75 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 47576 | 47953 |
| AVI03916.1 | MG872837_p21 | hypothetical protein | phrog_5711 | head fiber protein | head and packaging | 1 | 11869 | 12342 |
| AVI03924.1 | MG872837_p29 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24667 | 27507 |
| AVI03897.1 | MG872837_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| AVI03991.1 | MG872837_p97 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57230 | 57682 |
| AVI03942.1 | MG872837_p47 | hypothetical protein | phrog_6127 | unknown function | unknown function | -1 | 35617 | 35730 |
| AVI03927.1 | MG872837_p32 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28955 | 29140 |
| AVI04015.1 | MG872837_p123 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 67732 | 67869 |
| AVI03967.1 | MG872837_p73 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46738 | 47211 |
| AVI03990.1 | MG872837_p96 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57075 | 57233 |
| AVI03992.1 | MG872837_p98 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57686 | 58129 |
| AVI04014.1 | MG872837_p122 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 67535 | 67735 |
| AVI03904.1 | MG872837_p9 | hypothetical protein | phrog_18713 | unknown function | unknown function | -1 | 2156 | 2338 |
| AVI03941.1 | MG872837_p46 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35295 | 35624 |
| AVI03923.1 | MG872837_p28 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22274 | 24670 |
| AVI03922.1 | MG872837_p27 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21436 | 22257 |
| AVI04020.1 | MG872837_p128 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 68960 | 69349 |
| AVI03948.1 | MG872837_p53 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 36628 | 37023 |
| AVI03994.1 | MG872837_p100 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58499 | 58999 |
| AVI04006.1 | MG872837_p113 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 64249 | 65034 |
| AVI04030.1 | MG872837_p63 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 42431 | 42619 |
| AVI03936.1 | MG872837_p41 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34001 | 34198 |
| AVI03973.1 | MG872837_p79 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48769 | 49086 |
| AVI03986.1 | MG872837_p92 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54523 | 54621 |
| AVI03970.1 | MG872837_p76 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 47953 | 48126 |
| AVI03999.1 | MG872837_p106 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61484 | 61774 |
| AVI04021.1 | MG872837_p129 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 69540 | 69776 |
| AVI03972.1 | MG872837_p78 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 48359 | 48772 |
| AVI04024.1 | MG872837_p132 | hypothetical protein | phrog_8479 | unknown function | unknown function | -1 | 70192 | 70386 |
| AVI03953.1 | MG872837_p58 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 39968 | 40267 |
| AVI03906.1 | MG872837_p11 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4191 | 4412 |
| AVI03952.1 | MG872837_p57 | membrane protein | phrog_950 | unknown function | unknown function | -1 | 39100 | 39873 |
| AVI03946.1 | MG872837_p51 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36248 | 36463 |
| AVI03901.1 | MG872837_p6 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| AVI03925.1 | MG872837_p30 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 27508 | 28470 |
| AVI03945.1 | MG872837_p50 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36019 | 36189 |
| AVI03976.1 | MG872837_p82 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 49956 | 50291 |
| AVI04019.1 | MG872837_p127 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 68700 | 68963 |
| AVI03962.1 | MG872837_p68 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44018 | 44347 |
| AVI03987.1 | MG872837_p93 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54618 | 55943 |
| AVI03913.1 | MG872837_p18 | head-to-tail connector | phrog_2805 | minor tail protein | tail | 1 | 10046 | 10426 |
| AVI03988.1 | MG872837_p94 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 55980 | 56801 |
| AVI03968.1 | MG872837_p74 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47211 | 47579 |
| AVI04012.1 | MG872837_p120 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 66926 | 67387 |
| AVI03975.1 | MG872837_p81 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49309 | 49959 |
| AVI03974.1 | MG872837_p80 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49076 | 49312 |
| AVI03950.1 | MG872837_p55 | integrase | phrog_1 | integrase | integration and excision | 1 | 37863 | 38744 |
| AVI04002.1 | MG872837_p109 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62887 | 63111 |
| AVI03960.1 | MG872837_p66 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43338 | 43499 |
| AVI04029.1 | MG872837_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 10 | 270 |
| AVI03957.1 | MG872837_p62 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 41844 | 42122 |
| AVI03965.1 | MG872837_p71 | ERF family ssDNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45712 | 46434 |
| AVI03961.1 | MG872837_p67 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 43689 | 44021 |
| AVI03940.1 | MG872837_p45 | hypothetical protein | phrog_3447 | unknown function | unknown function | -1 | 35086 | 35298 |
| AVI04026.1 | MG872837_p134 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 70858 | 71079 |
| AVI04005.1 | MG872837_p112 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 63759 | 64238 |
| AVI04007.1 | MG872837_p114 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65031 | 65273 |
| AVI03985.1 | MG872837_p91 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 54158 | 54526 |
| AVI04027.1 | MG872837_p101 | endonuclease VII | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 59040 | 59603 |
| AVI03909.1 | MG872837_p14 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7356 | 8831 |
| AVI03898.1 | MG872837_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| AVI03949.1 | MG872837_p54 | membrane protein | phrog_2847 | unknown function | unknown function | -1 | 37310 | 37612 |
| AVI03959.1 | MG872837_p65 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43105 | 43338 |
| AVI03943.1 | MG872837_p48 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 35727 | 35855 |
| AVI04013.1 | MG872837_p121 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 67384 | 67551 |
| AVI03939.1 | MG872837_p44 | hypothetical protein | phrog_5831 | unknown function | unknown function | -1 | 34907 | 35089 |
| AVI04008.1 | MG872837_p115 | DNA recombinase | phrog_97 | UvsX-like recombinase | other | 1 | 65281 | 66243 |
| AVI03996.1 | MG872837_p103 | protease | phrog_94 | head maturation protease | head and packaging | 1 | 60152 | 60931 |
| AVI03984.1 | MG872837_p90 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 53110 | 54051 |
| AVI04016.1 | MG872837_p124 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 67866 | 68045 |
| AVI03914.1 | MG872837_p19 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 10404 | 10808 |
| AVI03978.1 | MG872837_p84 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51543 | 51731 |
| AVI03979.1 | MG872837_p85 | WhiB family transcription factor | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51728 | 51988 |
| AVI04003.1 | MG872837_p110 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 63108 | 63371 |
| AVI03944.1 | MG872837_p49 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35855 | 36022 |
| AVI04018.1 | MG872837_p126 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68187 | 68321 |
| AVI03918.1 | MG872837_p22 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 12463 | 13334 |
| AVI03966.1 | MG872837_p72 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 46427 | 46738 |
| AVI04000.1 | MG872837_p107 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61779 | 62090 |
| AVI04017.1 | MG872837_p125 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68045 | 68176 |
| AVI03983.1 | MG872837_p89 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 52761 | 52955 |
| AVI03971.1 | MG872837_p77 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48129 | 48362 |
| AVI03937.1 | MG872837_p42 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34195 | 34659 |
| AVI03921.1 | MG872837_p26 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19820 | 21415 |
| AVI04004.1 | MG872837_p111 | hydrolase | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 63382 | 63756 |
| AVI03917.1 | MG872837_p23 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12463 | 12924 |
| AVI03930.1 | MG872837_p35 | holin | phrog_526 | holin | lysis | 1 | 31137 | 31520 |
| AVI03929.1 | MG872837_p34 | lysin A | phrog_317 | endolysin | lysis | 1 | 29631 | 31133 |
| AVI03908.1 | MG872837_p13 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 5958 | 7250 |
| AVI04031.1 | MG872837_p118 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 66530 | 66742 |
| AVI03993.1 | MG872837_p99 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58131 | 58466 |
| AVI03900.1 | MG872837_p5 | terminase small subunit | phrog_3858 | unknown function | unknown function | 1 | 783 | 1064 |
| AVI03982.1 | MG872837_p88 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52402 | 52764 |
| AVI04001.1 | MG872837_p108 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62143 | 62433 |
| AVI03963.1 | MG872837_p69 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44344 | 45312 |
| AVI04022.1 | MG872837_p130 | hypothetical protein | phrog_7581 | unknown function | unknown function | -1 | 69779 | 69991 |
| AVI04025.1 | MG872837_p133 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 70421 | 70780 |
| AVI03910.1 | MG872837_p15 | head-to-tail connector | phrog_2796 | head-tail connector protein | connector | 1 | 8954 | 9133 |
| AVI03905.1 | MG872837_p10 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2509 | 4179 |
| AVI03977.1 | MG872837_p83 | dsDNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50284 | 51546 |
| AVI03935.1 | MG872837_p40 | hypothetical protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33567 | 33953 |
| AVI04028.1 | MG872837_p135 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 71069 | 71416 |
| AVI03902.1 | MG872837_p7 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 1511 | 1855 |
| AVI03954.1 | MG872837_p59 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 40720 | 40857 |
| AVI03947.1 | MG872837_p52 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36482 | 36628 |
| AVI04010.1 | MG872837_p117 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 66364 | 66537 |
| AVI03934.1 | MG872837_p39 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33125 | 33370 |
| AVI03998.1 | MG872837_p105 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 61127 | 61483 |
| AVI03989.1 | MG872837_p95 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 56798 | 57058 |
| AVI03919.1 | MG872837_p24 | tape measure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13327 | 18057 |
| AVI03907.1 | MG872837_p12 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4399 | 5955 |
| AVI03995.1 | MG872837_p102 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59596 | 60036 |
| AVI03951.1 | MG872837_p56 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 38883 | 39122 |
| AVI03915.1 | MG872837_p20 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 10835 | 11809 |
| AVI03926.1 | MG872837_p31 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28540 | 28968 |
| AVI03933.1 | MG872837_p38 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32702 | 33118 |
| AVI03958.1 | MG872837_p64 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 42666 | 42971 |
| AVI03931.1 | MG872837_p36 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31513 | 31851 |
| AVI03920.1 | MG872837_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18087 | 19748 |
| AVI04023.1 | MG872837_p131 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 69988 | 70188 |
| AVI03911.1 | MG872837_p16 | head-to-tail connector | phrog_442 | head-tail adaptor | connector | 1 | 9133 | 9699 |
| AVI04009.1 | MG872837_p116 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 66240 | 66377 |