Genomic map of Mycobacterium phage Scherzo (MG872842)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG872842
Definition
Mycobacterium phage Scherzo, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
NUCCORE
Length
53355
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
97
%GC
62.66
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVI04388.1 MG872842_p89 hypothetical protein phrog_10931 unknown function unknown function -1 49503 49637
AVI04379.1 MG872842_p80 hypothetical protein phrog_1342 unknown function unknown function -1 46059 46286
AVI04418.1 MG872842_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16647 17042
AVI04436.1 MG872842_p3 hypothetical protein phrog_10336 unknown function unknown function 1 2111 2338
AVI04447.1 MG872842_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 12300 12833
AVI04432.1 MG872842_p38 hypothetical protein phrog_10689 unknown function unknown function -1 28504 28716
AVI04371.1 MG872842_p52 hypothetical protein phrog_499 unknown function unknown function -1 36131 36394
AVI04399.1 MG872842_p63 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39859 40323
AVI04411.1 MG872842_p75 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44400 44948
AVI04428.1 MG872842_p34 dsDNA partitioning protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 26980 27606
AVI04421.1 MG872842_p27 minor tail protein phrog_106 minor tail protein tail 1 20560 21573
AVI04383.1 MG872842_p84 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47689 47952
AVI04434.1 MG872842_p40 hypothetical protein phrog_980 unknown function unknown function -1 28904 29158
AVI04396.1 MG872842_p97 hypothetical protein phrog_1676 unknown function unknown function -1 51568 51864
AVI04362.1 MG872842_p43 hypothetical protein phrog_896 unknown function unknown function -1 29664 29903
AVI04405.1 MG872842_p69 dsDNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41608 42417
AVI04372.1 MG872842_p53 hypothetical protein phrog_10515 unknown function unknown function -1 36391 36531
AVI04381.1 MG872842_p82 DNA methylase phrog_363 DNA methyltransferase other -1 46772 47320
AVI04360.1 MG872842_p41 hypothetical protein phrog_383 unknown function unknown function -1 29136 29507
AVI04453.1 MG872842_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15109 15498
AVI04367.1 MG872842_p48 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 32558 33262
AVI04384.1 MG872842_p85 hypothetical protein phrog_421 unknown function unknown function -1 47967 48728
AVI04365.1 MG872842_p46 helix-turn-helix DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 32021 32347
AVI04387.1 MG872842_p88 hypothetical protein phrog_586 unknown function unknown function -1 49139 49492
AVI04390.1 MG872842_p91 hypothetical protein phrog_10771 unknown function unknown function -1 49803 50174
AVI04435.1 MG872842_p2 hypothetical protein phrog_5234 unknown function unknown function 1 1050 2114
AVI04452.1 MG872842_p20 head-to-tail connector complex protein phrog_320 head closure Hc1 connector 1 14741 15109
AVI04397.1 MG872842_p61 hypothetical protein phrog_10806 unknown function unknown function -1 39478 39690
AVI04450.1 MG872842_p18 head-to-tail connector complex protein phrog_137 head-tail adaptor Ad1 connector 1 14173 14550
AVI04416.1 MG872842_p22 head-to-tail connector complex protein phrog_123 tail terminator connector 1 15495 15917
AVI04394.1 MG872842_p95 hypothetical protein phrog_2499 unknown function unknown function -1 51247 51450
AVI04446.1 MG872842_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11410 12270
AVI04439.1 MG872842_p7 minor tail protein phrog_819 tail protein tail 1 4192 5223
AVI04409.1 MG872842_p73 exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43118 43960
AVI04412.1 MG872842_p76 hypothetical protein phrog_1173 unknown function unknown function -1 45153 45338
AVI04415.1 MG872842_p79 hypothetical protein phrog_8086 unknown function unknown function -1 45826 46062
AVI04364.1 MG872842_p45 hypothetical protein phrog_4326 unknown function unknown function -1 31731 32021
AVI04441.1 MG872842_p9 hypothetical protein phrog_1087 unknown function unknown function 1 6039 6179
AVI04375.1 MG872842_p56 hypothetical protein phrog_474 phosphofructokinase other -1 37964 38242
AVI04376.1 MG872842_p57 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 38239 38511
AVI04408.1 MG872842_p72 hypothetical protein phrog_642 unknown function unknown function -1 42869 43087
AVI04443.1 MG872842_p11 holin phrog_526 holin lysis 1 7756 8142
AVI04424.1 MG872842_p30 minor tail protein phrog_352 minor tail protein tail 1 23590 24039
AVI04380.1 MG872842_p81 DNA methylase phrog_1008 DNA methyltransferase other -1 46306 46821
AVI04451.1 MG872842_p19 hypothetical protein phrog_830 head-tail connector protein connector 1 14547 14744
AVI04392.1 MG872842_p93 hypothetical protein phrog_2124 unknown function unknown function -1 50397 50525
AVI04377.1 MG872842_p58 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38511 39023
AVI04414.1 MG872842_p78 hypothetical protein phrog_3963 unknown function unknown function -1 45536 45826
AVI04437.1 MG872842_p5 hypothetical protein phrog_226 minor tail protein tail 1 2669 3142
AVI04398.1 MG872842_p62 hypothetical protein phrog_4886 unknown function unknown function -1 39683 39862
AVI04433.1 MG872842_p39 hypothetical protein phrog_9466 unknown function unknown function -1 28704 28907
AVI04370.1 MG872842_p51 hypothetical protein phrog_2046 unknown function unknown function -1 35956 36159
AVI04454.1 MG872842_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2335 2628
AVI04456.1 MG872842_p59 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38974 39357
AVI04373.1 MG872842_p54 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36528 37193
AVI04429.1 MG872842_p35 dsDNA partitioning protein phrog_2639 Arc-like repressor transcription regulation 1 27599 27868
AVI04374.1 MG872842_p55 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 37197 37967
AVI04361.1 MG872842_p42 hypothetical protein phrog_7968 unknown function unknown function -1 29500 29664
AVI04391.1 MG872842_p92 hypothetical protein phrog_3831 unknown function unknown function -1 50177 50407
AVI04426.1 MG872842_p32 minor tail protein phrog_737 minor tail protein tail 1 24410 26176
AVI04455.1 MG872842_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 379 1161
AVI04417.1 MG872842_p23 major tail protein phrog_117 major tail protein tail 1 15933 16529
AVI04431.1 MG872842_p37 hypothetical protein phrog_10331 DNA binding protein DNA, RNA and nucleotide metabolism -1 28209 28523
AVI04419.1 MG872842_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16647 17494
AVI04385.1 MG872842_p86 hypothetical protein phrog_855 unknown function unknown function -1 48730 48864
AVI04395.1 MG872842_p96 hypothetical protein phrog_1445 unknown function unknown function -1 51454 51537
AVI04369.1 MG872842_p50 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 33917 35956
AVI04368.1 MG872842_p49 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33342 33905
AVI04404.1 MG872842_p68 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 41210 41596
AVI04363.1 MG872842_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29934 31727
AVI04427.1 MG872842_p33 hypothetical protein phrog_2570 unknown function unknown function 1 26242 26436
AVI04448.1 MG872842_p16 major capsid protein phrog_10 major head protein head and packaging 1 12881 13840
AVI04407.1 MG872842_p71 hypothetical protein phrog_520 unknown function unknown function -1 42579 42857
AVI04393.1 MG872842_p94 hypothetical protein phrog_1392 unknown function unknown function -1 50534 51244
AVI04420.1 MG872842_p26 tape measure protein phrog_305 tail length tape measure protein tail 1 17623 20532
AVI04402.1 MG872842_p66 hypothetical protein phrog_8981 unknown function unknown function -1 40637 40816
AVI04413.1 MG872842_p77 hypothetical protein phrog_7865 unknown function unknown function -1 45369 45533
AVI04430.1 MG872842_p36 hypothetical protein phrog_2697 unknown function unknown function -1 28012 28212
AVI04449.1 MG872842_p17 hypothetical protein phrog_3101 unknown function unknown function 1 13946 14170
AVI04406.1 MG872842_p70 hypothetical protein phrog_9978 unknown function unknown function -1 42418 42582
AVI04382.1 MG872842_p83 hypothetical protein phrog_3256 unknown function unknown function -1 47324 47689
AVI04389.1 MG872842_p90 hypothetical protein phrog_519 unknown function unknown function -1 49634 49801
AVI04444.1 MG872842_p12 terminase phrog_9 terminase large subunit head and packaging 1 8163 9929
AVI04386.1 MG872842_p87 hypothetical protein phrog_3718 unknown function unknown function -1 48870 49115
AVI04445.1 MG872842_p13 portal protein phrog_104 portal protein head and packaging 1 9926 11413
AVI04400.1 MG872842_p64 hypothetical protein phrog_9791 unknown function unknown function -1 40268 40426
AVI04440.1 MG872842_p8 hypothetical protein phrog_356 minor tail protein tail 1 5227 5898
AVI04401.1 MG872842_p65 hypothetical protein phrog_1498 unknown function unknown function -1 40503 40652
AVI04423.1 MG872842_p29 minor tail protein phrog_110 minor tail protein tail 1 21782 23572
AVI04442.1 MG872842_p10 lysin A phrog_317 endolysin lysis 1 6179 7759
AVI04422.1 MG872842_p28 hypothetical protein phrog_1543 minor tail protein tail 1 21570 21782
AVI04438.1 MG872842_p6 minor tail protein phrog_1260 minor tail protein tail 1 3230 4192
AVI04425.1 MG872842_p31 hypothetical protein phrog_404 minor tail protein tail 1 24041 24409
AVI04403.1 MG872842_p67 hypothetical protein phrog_397 unknown function unknown function -1 40813 41043
AVI04378.1 MG872842_p60 hypothetical protein phrog_23055 unknown function unknown function -1 39350 39481
AVI04410.1 MG872842_p74 repressor phrog_1562 unknown function unknown function -1 43957 44403
AVI04366.1 MG872842_p47 hypothetical protein phrog_690 unknown function unknown function -1 32344 32556