| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG872842 |
Definition |
Mycobacterium phage Scherzo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
53355 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
62.66 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVI04388.1 | MG872842_p89 | hypothetical protein | phrog_10931 | unknown function | unknown function | -1 | 49503 | 49637 |
| AVI04379.1 | MG872842_p80 | hypothetical protein | phrog_1342 | unknown function | unknown function | -1 | 46059 | 46286 |
| AVI04418.1 | MG872842_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16647 | 17042 |
| AVI04436.1 | MG872842_p3 | hypothetical protein | phrog_10336 | unknown function | unknown function | 1 | 2111 | 2338 |
| AVI04447.1 | MG872842_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12300 | 12833 |
| AVI04432.1 | MG872842_p38 | hypothetical protein | phrog_10689 | unknown function | unknown function | -1 | 28504 | 28716 |
| AVI04371.1 | MG872842_p52 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36131 | 36394 |
| AVI04399.1 | MG872842_p63 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39859 | 40323 |
| AVI04411.1 | MG872842_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44400 | 44948 |
| AVI04428.1 | MG872842_p34 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 26980 | 27606 |
| AVI04421.1 | MG872842_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20560 | 21573 |
| AVI04383.1 | MG872842_p84 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47689 | 47952 |
| AVI04434.1 | MG872842_p40 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 28904 | 29158 |
| AVI04396.1 | MG872842_p97 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51568 | 51864 |
| AVI04362.1 | MG872842_p43 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29664 | 29903 |
| AVI04405.1 | MG872842_p69 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41608 | 42417 |
| AVI04372.1 | MG872842_p53 | hypothetical protein | phrog_10515 | unknown function | unknown function | -1 | 36391 | 36531 |
| AVI04381.1 | MG872842_p82 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 46772 | 47320 |
| AVI04360.1 | MG872842_p41 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 29136 | 29507 |
| AVI04453.1 | MG872842_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15109 | 15498 |
| AVI04367.1 | MG872842_p48 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32558 | 33262 |
| AVI04384.1 | MG872842_p85 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47967 | 48728 |
| AVI04365.1 | MG872842_p46 | helix-turn-helix DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32021 | 32347 |
| AVI04387.1 | MG872842_p88 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49139 | 49492 |
| AVI04390.1 | MG872842_p91 | hypothetical protein | phrog_10771 | unknown function | unknown function | -1 | 49803 | 50174 |
| AVI04435.1 | MG872842_p2 | hypothetical protein | phrog_5234 | unknown function | unknown function | 1 | 1050 | 2114 |
| AVI04452.1 | MG872842_p20 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 14741 | 15109 |
| AVI04397.1 | MG872842_p61 | hypothetical protein | phrog_10806 | unknown function | unknown function | -1 | 39478 | 39690 |
| AVI04450.1 | MG872842_p18 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14173 | 14550 |
| AVI04416.1 | MG872842_p22 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 15495 | 15917 |
| AVI04394.1 | MG872842_p95 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 51247 | 51450 |
| AVI04446.1 | MG872842_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11410 | 12270 |
| AVI04439.1 | MG872842_p7 | minor tail protein | phrog_819 | tail protein | tail | 1 | 4192 | 5223 |
| AVI04409.1 | MG872842_p73 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43118 | 43960 |
| AVI04412.1 | MG872842_p76 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 45153 | 45338 |
| AVI04415.1 | MG872842_p79 | hypothetical protein | phrog_8086 | unknown function | unknown function | -1 | 45826 | 46062 |
| AVI04364.1 | MG872842_p45 | hypothetical protein | phrog_4326 | unknown function | unknown function | -1 | 31731 | 32021 |
| AVI04441.1 | MG872842_p9 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 6039 | 6179 |
| AVI04375.1 | MG872842_p56 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37964 | 38242 |
| AVI04376.1 | MG872842_p57 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 38239 | 38511 |
| AVI04408.1 | MG872842_p72 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 42869 | 43087 |
| AVI04443.1 | MG872842_p11 | holin | phrog_526 | holin | lysis | 1 | 7756 | 8142 |
| AVI04424.1 | MG872842_p30 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23590 | 24039 |
| AVI04380.1 | MG872842_p81 | DNA methylase | phrog_1008 | DNA methyltransferase | other | -1 | 46306 | 46821 |
| AVI04451.1 | MG872842_p19 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 14547 | 14744 |
| AVI04392.1 | MG872842_p93 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 50397 | 50525 |
| AVI04377.1 | MG872842_p58 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38511 | 39023 |
| AVI04414.1 | MG872842_p78 | hypothetical protein | phrog_3963 | unknown function | unknown function | -1 | 45536 | 45826 |
| AVI04437.1 | MG872842_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2669 | 3142 |
| AVI04398.1 | MG872842_p62 | hypothetical protein | phrog_4886 | unknown function | unknown function | -1 | 39683 | 39862 |
| AVI04433.1 | MG872842_p39 | hypothetical protein | phrog_9466 | unknown function | unknown function | -1 | 28704 | 28907 |
| AVI04370.1 | MG872842_p51 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35956 | 36159 |
| AVI04454.1 | MG872842_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2335 | 2628 |
| AVI04456.1 | MG872842_p59 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38974 | 39357 |
| AVI04373.1 | MG872842_p54 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36528 | 37193 |
| AVI04429.1 | MG872842_p35 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 27599 | 27868 |
| AVI04374.1 | MG872842_p55 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37197 | 37967 |
| AVI04361.1 | MG872842_p42 | hypothetical protein | phrog_7968 | unknown function | unknown function | -1 | 29500 | 29664 |
| AVI04391.1 | MG872842_p92 | hypothetical protein | phrog_3831 | unknown function | unknown function | -1 | 50177 | 50407 |
| AVI04426.1 | MG872842_p32 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 24410 | 26176 |
| AVI04455.1 | MG872842_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 379 | 1161 |
| AVI04417.1 | MG872842_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15933 | 16529 |
| AVI04431.1 | MG872842_p37 | hypothetical protein | phrog_10331 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28209 | 28523 |
| AVI04419.1 | MG872842_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16647 | 17494 |
| AVI04385.1 | MG872842_p86 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48730 | 48864 |
| AVI04395.1 | MG872842_p96 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51454 | 51537 |
| AVI04369.1 | MG872842_p50 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33917 | 35956 |
| AVI04368.1 | MG872842_p49 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33342 | 33905 |
| AVI04404.1 | MG872842_p68 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 41210 | 41596 |
| AVI04363.1 | MG872842_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29934 | 31727 |
| AVI04427.1 | MG872842_p33 | hypothetical protein | phrog_2570 | unknown function | unknown function | 1 | 26242 | 26436 |
| AVI04448.1 | MG872842_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12881 | 13840 |
| AVI04407.1 | MG872842_p71 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42579 | 42857 |
| AVI04393.1 | MG872842_p94 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50534 | 51244 |
| AVI04420.1 | MG872842_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17623 | 20532 |
| AVI04402.1 | MG872842_p66 | hypothetical protein | phrog_8981 | unknown function | unknown function | -1 | 40637 | 40816 |
| AVI04413.1 | MG872842_p77 | hypothetical protein | phrog_7865 | unknown function | unknown function | -1 | 45369 | 45533 |
| AVI04430.1 | MG872842_p36 | hypothetical protein | phrog_2697 | unknown function | unknown function | -1 | 28012 | 28212 |
| AVI04449.1 | MG872842_p17 | hypothetical protein | phrog_3101 | unknown function | unknown function | 1 | 13946 | 14170 |
| AVI04406.1 | MG872842_p70 | hypothetical protein | phrog_9978 | unknown function | unknown function | -1 | 42418 | 42582 |
| AVI04382.1 | MG872842_p83 | hypothetical protein | phrog_3256 | unknown function | unknown function | -1 | 47324 | 47689 |
| AVI04389.1 | MG872842_p90 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49634 | 49801 |
| AVI04444.1 | MG872842_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 8163 | 9929 |
| AVI04386.1 | MG872842_p87 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 48870 | 49115 |
| AVI04445.1 | MG872842_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9926 | 11413 |
| AVI04400.1 | MG872842_p64 | hypothetical protein | phrog_9791 | unknown function | unknown function | -1 | 40268 | 40426 |
| AVI04440.1 | MG872842_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 5227 | 5898 |
| AVI04401.1 | MG872842_p65 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 40503 | 40652 |
| AVI04423.1 | MG872842_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21782 | 23572 |
| AVI04442.1 | MG872842_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 6179 | 7759 |
| AVI04422.1 | MG872842_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21570 | 21782 |
| AVI04438.1 | MG872842_p6 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3230 | 4192 |
| AVI04425.1 | MG872842_p31 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24041 | 24409 |
| AVI04403.1 | MG872842_p67 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40813 | 41043 |
| AVI04378.1 | MG872842_p60 | hypothetical protein | phrog_23055 | unknown function | unknown function | -1 | 39350 | 39481 |
| AVI04410.1 | MG872842_p74 | repressor | phrog_1562 | unknown function | unknown function | -1 | 43957 | 44403 |
| AVI04366.1 | MG872842_p47 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32344 | 32556 |