Genomic map of Salmonella phage vB_SpuP_Spp16 (MG878892)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG878892
Definition
Salmonella phage vB_SpuP_Spp16, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Panjvirus; Salmonella virus Spp16.
DB of origin
NUCCORE
Length
41832
Host Name
Salmonella sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
39.45
Number of singletons
14
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVI05069.1 MG878892_p50 lytic glycosylase phrog_342 internal virion protein with endolysin domain head and packaging -1 34164 37574
AVI05037.1 MG878892_p18 hypothetical protein singleton unknown function unknown function -1 14115 14303
AVI05065.1 MG878892_p46 DNA packaging protein phrog_38 terminase large subunit head and packaging -1 29567 31480
AVI05058.1 MG878892_p39 hypothetical protein phrog_26259 unknown function unknown function -1 25571 26422
AVI05039.1 MG878892_p20 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 14720 17194
AVI05050.1 MG878892_p31 hypothetical protein phrog_5136 unknown function unknown function -1 22237 22482
AVI05034.1 MG878892_p15 hypothetical protein phrog_9561 unknown function unknown function -1 11952 12338
AVI05051.1 MG878892_p32 hypothetical protein singleton unknown function unknown function -1 22483 23025
AVI05026.1 MG878892_p7 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover -1 6126 6539
AVI05044.1 MG878892_p25 DNA primase phrog_8634 DNA primase DNA, RNA and nucleotide metabolism -1 19800 20468
AVI05071.1 MG878892_p52 hypothetical protein phrog_5745 internal virion protein head and packaging -1 39907 40665
AVI05036.1 MG878892_p17 hypothetical protein phrog_862 unknown function unknown function -1 13313 14113
AVI05052.1 MG878892_p33 hypothetical protein singleton unknown function unknown function -1 23037 23243
AVI05038.1 MG878892_p19 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 14317 14727
AVI05042.1 MG878892_p23 hypothetical protein singleton unknown function unknown function -1 18407 18562
AVI05040.1 MG878892_p21 DNA ligase (ATP) phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 17198 18169
AVI05041.1 MG878892_p22 hypothetical protein phrog_14146 unknown function unknown function -1 18166 18414
AVI05048.1 MG878892_p29 hypothetical protein phrog_13874 unknown function unknown function -1 21383 21685
AVI05043.1 MG878892_p24 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 18555 19799
AVI05047.1 MG878892_p28 hypothetical protein singleton unknown function unknown function -1 21082 21390
AVI05031.1 MG878892_p12 hypothetical protein phrog_221 metallo-phosphoesterase other -1 10074 11078
AVI05056.1 MG878892_p37 hypothetical protein phrog_9286 unknown function unknown function -1 24491 24832
AVI05027.1 MG878892_p8 hypothetical protein phrog_5112 unknown function unknown function -1 6539 6715
AVI05068.1 MG878892_p49 tail fiber protein phrog_25042 tail fiber protein tail -1 32071 34095
AVI05025.1 MG878892_p6 hypothetical protein phrog_6529 unknown function unknown function -1 5722 6126
AVI05070.1 MG878892_p51 hypothetical protein phrog_3883 internal virion protein head and packaging -1 37577 39898
AVI05053.1 MG878892_p34 hypothetical protein phrog_14146 unknown function unknown function -1 23236 23406
AVI05021.1 MG878892_p2 major capsid protein phrog_267 major head protein head and packaging -1 2115 3149
AVI05055.1 MG878892_p36 hypothetical protein singleton unknown function unknown function -1 24418 24531
AVI05020.1 MG878892_p1 tail tuber protein A phrog_446 tail protein tail -1 1444 2031
AVI05060.1 MG878892_p41 hypothetical protein singleton unknown function unknown function -1 27770 27937
AVI05064.1 MG878892_p45 DNA recombinase phrog_10357 recombinase other -1 29133 29567
AVI05028.1 MG878892_p9 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism -1 6886 9345
AVI05063.1 MG878892_p44 lysin phrog_7 endolysin lysis -1 28549 29097
AVI05023.1 MG878892_p4 head-tail connector protein phrog_449 head-tail adaptor connector -1 4041 5555
AVI05067.1 MG878892_p48 holin phrog_920 holin lysis -1 31851 32051
AVI05061.1 MG878892_p42 hypothetical protein phrog_13582 unknown function unknown function -1 27934 28107
AVI05033.1 MG878892_p14 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 11524 11955
AVI05049.1 MG878892_p30 hypothetical protein singleton unknown function unknown function -1 21685 22227
AVI05057.1 MG878892_p38 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other -1 25096 25524
AVI05030.1 MG878892_p11 hypothetical protein singleton unknown function unknown function -1 9898 10077
AVI05046.1 MG878892_p27 urease accessory protein phrog_9577 unknown function unknown function -1 20675 21085
AVI05062.1 MG878892_p43 hypothetical protein singleton unknown function unknown function -1 28070 28405
AVI05029.1 MG878892_p10 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other -1 9354 9905
AVI05024.1 MG878892_p5 hypothetical protein singleton unknown function unknown function -1 5552 5722
AVI05054.1 MG878892_p35 hypothetical protein phrog_1448 unknown function unknown function -1 23417 23929
AVI05022.1 MG878892_p3 capsid and scaffold protein phrog_1018 head scaffolding protein head and packaging -1 3227 4039
AVI05032.1 MG878892_p13 DNA endonuclease phrog_11865 endonuclease VII DNA, RNA and nucleotide metabolism -1 11071 11361
AVI05035.1 MG878892_p16 DNA exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 12342 13304
AVI05066.1 MG878892_p47 DNA maturase A phrog_9441 terminase small subunit head and packaging -1 31480 31866
AVI05072.1 MG878892_p53 tail tuber protein B singleton unknown function unknown function -1 40668 41819
AVI05045.1 MG878892_p26 hypothetical protein singleton unknown function unknown function -1 20522 20674
AVI05059.1 MG878892_p40 hypothetical protein singleton unknown function unknown function -1 27604 27768