| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG897800 |
Definition |
Pseudomonas phage vB_PaeS_C1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus. |
DB of origin |
NUCCORE |
Length |
43133 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
53.57 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVJ48096.1 | MG897800_p24 | FAD/FMN-containing dehydrogenase | phrog_778 | tail assembly protein | tail | -1 | 18396 | 19220 |
| AVJ48120.1 | MG897800_p48 | hypothetical protein | phrog_462 | lipoprotein | other | -1 | 39307 | 39561 |
| AVJ48117.1 | MG897800_p45 | Rz | phrog_1026 | Rz-like spanin | lysis | -1 | 38189 | 38494 |
| AVJ48118.1 | MG897800_p46 | long tail fiber proximal subunit | phrog_1259 | baseplate hub subunit and tail lysozyme | tail | -1 | 38506 | 39051 |
| AVJ48109.1 | MG897800_p37 | hypothetical protein | phrog_9062 | unknown function | unknown function | -1 | 31036 | 31440 |
| AVJ48131.1 | MG897800_p59 | hypothetical protein | phrog_8564 | unknown function | unknown function | -1 | 42922 | 43125 |
| AVJ48074.1 | MG897800_p2 | hypothetical protein | phrog_11401 | unknown function | unknown function | -1 | 798 | 1172 |
| AVJ48093.1 | MG897800_p21 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 12742 | 13884 |
| AVJ48090.1 | MG897800_p18 | exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 9808 | 10800 |
| AVJ48088.1 | MG897800_p16 | single-stranded DNA-binding protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8439 | 9191 |
| AVJ48075.1 | MG897800_p3 | hypothetical protein | phrog_22782 | unknown function | unknown function | -1 | 1221 | 1490 |
| AVJ48127.1 | MG897800_p55 | endolysin | phrog_14614 | endolysin | lysis | -1 | 41921 | 42211 |
| AVJ48089.1 | MG897800_p17 | hypothetical protein | phrog_1934 | unknown function | unknown function | 1 | 9270 | 9797 |
| AVJ48113.1 | MG897800_p41 | structural protein | phrog_145 | portal protein | head and packaging | -1 | 34352 | 35857 |
| AVJ48095.1 | MG897800_p23 | central tail hub | phrog_1101 | tail protein | tail | -1 | 15948 | 18392 |
| AVJ48103.1 | MG897800_p31 | tail fibers protein | phrog_313 | Tail assembly chaperone | tail | -1 | 27192 | 27620 |
| AVJ48092.1 | MG897800_p20 | hypothetical protein | phrog_11184 | unknown function | unknown function | 1 | 12453 | 12758 |
| AVJ48116.1 | MG897800_p44 | Rz1 | phrog_1275 | Rz-like spanin | lysis | -1 | 37993 | 38166 |
| AVJ48098.1 | MG897800_p26 | hypothetical protein | phrog_687 | structural protein | head and packaging | -1 | 20930 | 21841 |
| AVJ48107.1 | MG897800_p35 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 30068 | 30586 |
| AVJ48097.1 | MG897800_p25 | hypothetical protein | phrog_1082 | tail assembly protein | tail | -1 | 19220 | 20926 |
| AVJ48085.1 | MG897800_p13 | MazG-related protein | phrog_229 | MazG-like pyrophosphatase | other | 1 | 6535 | 7092 |
| AVJ48073.1 | MG897800_p1 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 516 | 737 |
| AVJ48108.1 | MG897800_p36 | hypothetical protein | phrog_10405 | virion structural protein | head and packaging | -1 | 30599 | 30970 |
| AVJ48115.1 | MG897800_p43 | small terminase subunit | phrog_5334 | terminase small subunit | head and packaging | -1 | 37447 | 37935 |
| AVJ48128.1 | MG897800_p56 | hypothetical protein | phrog_14000 | unknown function | unknown function | -1 | 42228 | 42533 |
| AVJ48080.1 | MG897800_p8 | hypothetical protein | phrog_20574 | unknown function | unknown function | -1 | 3067 | 3216 |
| AVJ48129.1 | MG897800_p57 | hypothetical protein | phrog_13844 | unknown function | unknown function | -1 | 42577 | 42750 |
| AVJ48078.1 | MG897800_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2484 | 2783 |
| AVJ48100.1 | MG897800_p28 | tail length tape-measure protein | phrog_3336 | tail length tape measure protein | tail | -1 | 22804 | 26418 |
| AVJ48124.1 | MG897800_p52 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 40999 | 41466 |
| AVJ48111.1 | MG897800_p39 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 32490 | 33209 |
| AVJ48086.1 | MG897800_p14 | hypothetical protein | phrog_2480 | unknown function | unknown function | 1 | 7169 | 7609 |
| AVJ48122.1 | MG897800_p50 | hypothetical protein | phrog_6168 | unknown function | unknown function | -1 | 40366 | 40575 |
| AVJ48101.1 | MG897800_p29 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 26424 | 26858 |
| AVJ48094.1 | MG897800_p22 | DNA polymerase B region | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13896 | 15947 |
| AVJ48084.1 | MG897800_p12 | hypothetical protein | phrog_13059 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 6209 | 6397 |
| AVJ48112.1 | MG897800_p40 | minor capsid protein | phrog_241 | head morphogenesis | head and packaging | -1 | 33246 | 34340 |
| AVJ48110.1 | MG897800_p38 | major capsid protein | phrog_247 | major head protein | head and packaging | -1 | 31510 | 32487 |
| AVJ48102.1 | MG897800_p30 | hypothetical protein | phrog_3817 | tail chaperonin | tail | -1 | 26827 | 27171 |
| AVJ48099.1 | MG897800_p27 | hypothetical protein | phrog_687 | structural protein | head and packaging | -1 | 21841 | 22803 |
| AVJ48082.1 | MG897800_p10 | hypothetical protein | phrog_25386 | unknown function | unknown function | -1 | 3546 | 3746 |
| AVJ48091.1 | MG897800_p19 | ATP-dependent RNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 10793 | 12448 |
| AVJ48106.1 | MG897800_p34 | head-tail joining protein | phrog_161 | head closure Hc1 | connector | -1 | 29684 | 30064 |
| AVJ48076.1 | MG897800_p4 | hypothetical protein | phrog_10560 | unknown function | unknown function | -1 | 1574 | 1816 |
| AVJ48126.1 | MG897800_p54 | hypothetical protein | phrog_9844 | unknown function | unknown function | -1 | 41695 | 41928 |
| AVJ48077.1 | MG897800_p5 | hypothetical protein | phrog_10287 | unknown function | unknown function | -1 | 1855 | 2130 |
| AVJ48079.1 | MG897800_p7 | hypothetical protein | phrog_9154 | unknown function | unknown function | -1 | 2789 | 2995 |
| AVJ48083.1 | MG897800_p11 | DNA primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 3898 | 6219 |
| AVJ48121.1 | MG897800_p49 | hypothetical protein | phrog_7597 | unknown function | unknown function | -1 | 39710 | 40282 |
| AVJ48123.1 | MG897800_p51 | hypothetical protein | phrog_9241 | unknown function | unknown function | -1 | 40610 | 41020 |
| AVJ48130.1 | MG897800_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42764 | 42925 |
| AVJ48114.1 | MG897800_p42 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 35871 | 37466 |
| AVJ48081.1 | MG897800_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3229 | 3549 |
| AVJ48104.1 | MG897800_p32 | major tail tube protein | phrog_290 | minor tail protein | tail | -1 | 27684 | 29219 |
| AVJ48125.1 | MG897800_p53 | hypothetical protein | phrog_16782 | unknown function | unknown function | -1 | 41457 | 41624 |
| AVJ48119.1 | MG897800_p47 | holin | phrog_1356 | holin | lysis | -1 | 39044 | 39310 |
| AVJ48087.1 | MG897800_p15 | RecA | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7664 | 8380 |
| AVJ48105.1 | MG897800_p33 | minor tail protein | phrog_179 | tail terminator | connector | -1 | 29232 | 29687 |