Genomic map of Pseudomonas phage vB_PaeS_C1 (MG897800)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG897800
Definition
Pseudomonas phage vB_PaeS_C1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus.
DB of origin
NUCCORE
Length
43133
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
53.57
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVJ48096.1 MG897800_p24 FAD/FMN-containing dehydrogenase phrog_778 tail assembly protein tail -1 18396 19220
AVJ48120.1 MG897800_p48 hypothetical protein phrog_462 lipoprotein other -1 39307 39561
AVJ48117.1 MG897800_p45 Rz phrog_1026 Rz-like spanin lysis -1 38189 38494
AVJ48118.1 MG897800_p46 long tail fiber proximal subunit phrog_1259 baseplate hub subunit and tail lysozyme tail -1 38506 39051
AVJ48109.1 MG897800_p37 hypothetical protein phrog_9062 unknown function unknown function -1 31036 31440
AVJ48131.1 MG897800_p59 hypothetical protein phrog_8564 unknown function unknown function -1 42922 43125
AVJ48074.1 MG897800_p2 hypothetical protein phrog_11401 unknown function unknown function -1 798 1172
AVJ48093.1 MG897800_p21 replicative clamp phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 12742 13884
AVJ48090.1 MG897800_p18 exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism 1 9808 10800
AVJ48088.1 MG897800_p16 single-stranded DNA-binding protein phrog_6015 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8439 9191
AVJ48075.1 MG897800_p3 hypothetical protein phrog_22782 unknown function unknown function -1 1221 1490
AVJ48127.1 MG897800_p55 endolysin phrog_14614 endolysin lysis -1 41921 42211
AVJ48089.1 MG897800_p17 hypothetical protein phrog_1934 unknown function unknown function 1 9270 9797
AVJ48113.1 MG897800_p41 structural protein phrog_145 portal protein head and packaging -1 34352 35857
AVJ48095.1 MG897800_p23 central tail hub phrog_1101 tail protein tail -1 15948 18392
AVJ48103.1 MG897800_p31 tail fibers protein phrog_313 Tail assembly chaperone tail -1 27192 27620
AVJ48092.1 MG897800_p20 hypothetical protein phrog_11184 unknown function unknown function 1 12453 12758
AVJ48116.1 MG897800_p44 Rz1 phrog_1275 Rz-like spanin lysis -1 37993 38166
AVJ48098.1 MG897800_p26 hypothetical protein phrog_687 structural protein head and packaging -1 20930 21841
AVJ48107.1 MG897800_p35 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 30068 30586
AVJ48097.1 MG897800_p25 hypothetical protein phrog_1082 tail assembly protein tail -1 19220 20926
AVJ48085.1 MG897800_p13 MazG-related protein phrog_229 MazG-like pyrophosphatase other 1 6535 7092
AVJ48073.1 MG897800_p1 hypothetical protein phrog_54 DksA-like zinc-finger protein other -1 516 737
AVJ48108.1 MG897800_p36 hypothetical protein phrog_10405 virion structural protein head and packaging -1 30599 30970
AVJ48115.1 MG897800_p43 small terminase subunit phrog_5334 terminase small subunit head and packaging -1 37447 37935
AVJ48128.1 MG897800_p56 hypothetical protein phrog_14000 unknown function unknown function -1 42228 42533
AVJ48080.1 MG897800_p8 hypothetical protein phrog_20574 unknown function unknown function -1 3067 3216
AVJ48129.1 MG897800_p57 hypothetical protein phrog_13844 unknown function unknown function -1 42577 42750
AVJ48078.1 MG897800_p6 hypothetical protein singleton unknown function unknown function -1 2484 2783
AVJ48100.1 MG897800_p28 tail length tape-measure protein phrog_3336 tail length tape measure protein tail -1 22804 26418
AVJ48124.1 MG897800_p52 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 40999 41466
AVJ48111.1 MG897800_p39 scaffold protein phrog_206 head scaffolding protein head and packaging -1 32490 33209
AVJ48086.1 MG897800_p14 hypothetical protein phrog_2480 unknown function unknown function 1 7169 7609
AVJ48122.1 MG897800_p50 hypothetical protein phrog_6168 unknown function unknown function -1 40366 40575
AVJ48101.1 MG897800_p29 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 26424 26858
AVJ48094.1 MG897800_p22 DNA polymerase B region phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism 1 13896 15947
AVJ48084.1 MG897800_p12 hypothetical protein phrog_13059 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 6209 6397
AVJ48112.1 MG897800_p40 minor capsid protein phrog_241 head morphogenesis head and packaging -1 33246 34340
AVJ48110.1 MG897800_p38 major capsid protein phrog_247 major head protein head and packaging -1 31510 32487
AVJ48102.1 MG897800_p30 hypothetical protein phrog_3817 tail chaperonin tail -1 26827 27171
AVJ48099.1 MG897800_p27 hypothetical protein phrog_687 structural protein head and packaging -1 21841 22803
AVJ48082.1 MG897800_p10 hypothetical protein phrog_25386 unknown function unknown function -1 3546 3746
AVJ48091.1 MG897800_p19 ATP-dependent RNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 10793 12448
AVJ48106.1 MG897800_p34 head-tail joining protein phrog_161 head closure Hc1 connector -1 29684 30064
AVJ48076.1 MG897800_p4 hypothetical protein phrog_10560 unknown function unknown function -1 1574 1816
AVJ48126.1 MG897800_p54 hypothetical protein phrog_9844 unknown function unknown function -1 41695 41928
AVJ48077.1 MG897800_p5 hypothetical protein phrog_10287 unknown function unknown function -1 1855 2130
AVJ48079.1 MG897800_p7 hypothetical protein phrog_9154 unknown function unknown function -1 2789 2995
AVJ48083.1 MG897800_p11 DNA primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 3898 6219
AVJ48121.1 MG897800_p49 hypothetical protein phrog_7597 unknown function unknown function -1 39710 40282
AVJ48123.1 MG897800_p51 hypothetical protein phrog_9241 unknown function unknown function -1 40610 41020
AVJ48130.1 MG897800_p58 hypothetical protein singleton unknown function unknown function -1 42764 42925
AVJ48114.1 MG897800_p42 terminase large subunit phrog_2 terminase large subunit head and packaging -1 35871 37466
AVJ48081.1 MG897800_p9 hypothetical protein singleton unknown function unknown function -1 3229 3549
AVJ48104.1 MG897800_p32 major tail tube protein phrog_290 minor tail protein tail -1 27684 29219
AVJ48125.1 MG897800_p53 hypothetical protein phrog_16782 unknown function unknown function -1 41457 41624
AVJ48119.1 MG897800_p47 holin phrog_1356 holin lysis -1 39044 39310
AVJ48087.1 MG897800_p15 RecA phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7664 8380
AVJ48105.1 MG897800_p33 minor tail protein phrog_179 tail terminator connector -1 29232 29687