| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG925338 |
Definition |
Mycobacterium phage ChaChing, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus; unclassified Pipefishvirus. |
DB of origin |
NUCCORE |
Length |
68668 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
103 |
%GC |
67.5 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVJ49322.1 | MG925338_p59 | hypothetical protein | phrog_6482 | unknown function | unknown function | -1 | 53696 | 53971 |
| AVJ49342.1 | MG925338_p79 | hypothetical protein | phrog_6691 | unknown function | unknown function | -1 | 60673 | 60885 |
| AVJ49290.1 | MG925338_p26 | tail assembly chaperone | phrog_5 | tail completion or Neck1 protein | connector | 1 | 19378 | 19791 |
| AVJ49281.1 | MG925338_p17 | hypothetical protein | phrog_565 | holin | lysis | 1 | 14581 | 14964 |
| AVJ49289.1 | MG925338_p25 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 19023 | 19394 |
| AVJ49270.1 | MG925338_p6 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 2714 | 4471 |
| AVJ49296.1 | MG925338_p32 | minor tail protein | phrog_356 | minor tail protein | tail | 1 | 30855 | 32237 |
| AVJ49326.1 | MG925338_p63 | hypothetical protein | phrog_6735 | unknown function | unknown function | -1 | 55021 | 55140 |
| AVJ49328.1 | MG925338_p65 | hypothetical protein | phrog_6105 | unknown function | unknown function | -1 | 55404 | 55754 |
| AVJ49266.1 | MG925338_p2 | hypothetical protein | phrog_6919 | unknown function | unknown function | 1 | 690 | 854 |
| AVJ49298.1 | MG925338_p34 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 33463 | 33846 |
| AVJ49265.1 | MG925338_p1 | ParB-like nuclease domain | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 693 |
| AVJ49351.1 | MG925338_p88 | hypothetical protein | phrog_7490 | unknown function | unknown function | -1 | 62810 | 62998 |
| AVJ49272.1 | MG925338_p8 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 4860 | 5429 |
| AVJ49347.1 | MG925338_p84 | hypothetical protein | phrog_6338 | unknown function | unknown function | -1 | 61696 | 61854 |
| AVJ49320.1 | MG925338_p57 | hypothetical protein | phrog_6342 | unknown function | unknown function | -1 | 51109 | 51882 |
| AVJ49285.1 | MG925338_p21 | major tail protein | phrog_792 | major tail protein | tail | 1 | 16372 | 17451 |
| AVJ49274.1 | MG925338_p10 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 5964 | 6299 |
| AVJ49275.1 | MG925338_p11 | portal protein | phrog_776 | portal protein | head and packaging | 1 | 6329 | 8233 |
| AVJ49301.1 | MG925338_p37 | minor tail protein | phrog_282 | unknown function | unknown function | 1 | 34941 | 35540 |
| AVJ49306.1 | MG925338_p42 | hypothetical protein | phrog_2804 | virion structural protein | head and packaging | 1 | 38025 | 38750 |
| AVJ49341.1 | MG925338_p78 | hypothetical protein | phrog_4974 | unknown function | unknown function | -1 | 60430 | 60618 |
| AVJ49360.1 | MG925338_p97 | hydrolase | phrog_1221 | unknown function | unknown function | -1 | 65850 | 67052 |
| AVJ49316.1 | MG925338_p53 | hypothetical protein | phrog_6400 | unknown function | unknown function | -1 | 47265 | 47627 |
| AVJ49335.1 | MG925338_p72 | hypothetical protein | phrog_1031 | unknown function | unknown function | 1 | 58540 | 58944 |
| AVJ49300.1 | MG925338_p36 | minor tail protein | phrog_282 | unknown function | unknown function | 1 | 34291 | 34944 |
| AVJ49297.1 | MG925338_p33 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 32234 | 33436 |
| AVJ49340.1 | MG925338_p77 | DNA binding domain protein | phrog_928 | unknown function | unknown function | 1 | 59890 | 60417 |
| AVJ49283.1 | MG925338_p19 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 15476 | 15955 |
| AVJ49321.1 | MG925338_p58 | DNA primase/polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 51879 | 53696 |
| AVJ49293.1 | MG925338_p29 | minor tail protein | phrog_838 | unknown function | unknown function | 1 | 26161 | 27591 |
| AVJ49339.1 | MG925338_p76 | hypothetical protein | phrog_6229 | unknown function | unknown function | 1 | 59564 | 59908 |
| AVJ49309.1 | MG925338_p45 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 39521 | 40219 |
| AVJ49287.1 | MG925338_p23 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 17736 | 18494 |
| AVJ49294.1 | MG925338_p30 | minor tail protein | phrog_837 | minor tail protein | tail | 1 | 27588 | 28631 |
| AVJ49307.1 | MG925338_p43 | DNA binding domain protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 38806 | 39042 |
| AVJ49353.1 | MG925338_p90 | hypothetical protein | phrog_5355 | unknown function | unknown function | -1 | 63301 | 63456 |
| AVJ49310.1 | MG925338_p46 | lysin A | phrog_700 | endolysin | lysis | 1 | 40324 | 41547 |
| AVJ49313.1 | MG925338_p49 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43277 | 44890 |
| AVJ49312.1 | MG925338_p48 | hypothetical protein | phrog_870 | unknown function | unknown function | -1 | 42682 | 43227 |
| AVJ49302.1 | MG925338_p38 | hypothetical protein | phrog_3329 | unknown function | unknown function | 1 | 35537 | 36886 |
| AVJ49348.1 | MG925338_p85 | hypothetical protein | phrog_4392 | unknown function | unknown function | -1 | 61847 | 62197 |
| AVJ49295.1 | MG925338_p31 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 28628 | 30853 |
| AVJ49333.1 | MG925338_p70 | hypothetical protein | phrog_4938 | unknown function | unknown function | 1 | 57775 | 57939 |
| AVJ49357.1 | MG925338_p94 | hypothetical protein | phrog_6114 | unknown function | unknown function | -1 | 64547 | 64726 |
| AVJ49292.1 | MG925338_p28 | tapemeasure protein | phrog_934 | tail length tape measure protein | tail | 1 | 20410 | 26151 |
| AVJ49356.1 | MG925338_p93 | hypothetical protein | phrog_5411 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 64167 | 64547 |
| AVJ49345.1 | MG925338_p82 | hypothetical protein | phrog_6304 | unknown function | unknown function | -1 | 61368 | 61532 |
| AVJ49334.1 | MG925338_p71 | helix-turn-helix DNA binding domain protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 57936 | 58535 |
| AVJ49299.1 | MG925338_p35 | minor tail protein | phrog_948 | unknown function | unknown function | 1 | 33855 | 34280 |
| AVJ49354.1 | MG925338_p91 | hypothetical protein | phrog_6199 | unknown function | unknown function | -1 | 63531 | 63914 |
| AVJ49314.1 | MG925338_p50 | hypothetical protein | phrog_7519 | unknown function | unknown function | -1 | 44890 | 45111 |
| AVJ49331.1 | MG925338_p68 | DNA binding domain protein | phrog_1016 | unknown function | unknown function | 1 | 57264 | 57551 |
| AVJ49279.1 | MG925338_p15 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 13155 | 13964 |
| AVJ49269.1 | MG925338_p5 | ParB-like nuclease domain | phrog_2159 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2148 | 2717 |
| AVJ49350.1 | MG925338_p87 | hypothetical protein | phrog_7414 | unknown function | unknown function | -1 | 62526 | 62813 |
| AVJ49280.1 | MG925338_p16 | hypothetical protein | phrog_970 | unknown function | unknown function | 1 | 13979 | 14584 |
| AVJ49359.1 | MG925338_p96 | hypothetical protein | phrog_1010 | unknown function | unknown function | -1 | 65288 | 65776 |
| AVJ49346.1 | MG925338_p83 | hypothetical protein | phrog_6460 | unknown function | unknown function | -1 | 61529 | 61699 |
| AVJ49278.1 | MG925338_p14 | major capsid protein | phrog_777 | major head protein | head and packaging | 1 | 11041 | 13056 |
| AVJ49355.1 | MG925338_p92 | hypothetical protein | phrog_6428 | unknown function | unknown function | -1 | 63955 | 64167 |
| AVJ49363.1 | MG925338_p100 | hypothetical protein | phrog_5733 | unknown function | unknown function | 1 | 67628 | 67873 |
| AVJ49336.1 | MG925338_p73 | hypothetical protein | phrog_4885 | unknown function | unknown function | 1 | 58951 | 59208 |
| AVJ49358.1 | MG925338_p95 | hypothetical protein | phrog_6469 | unknown function | unknown function | -1 | 64723 | 65190 |
| AVJ49317.1 | MG925338_p54 | hypothetical protein | phrog_3892 | unknown function | unknown function | -1 | 47627 | 47956 |
| AVJ49362.1 | MG925338_p99 | hypothetical protein | phrog_4825 | unknown function | unknown function | 1 | 67444 | 67617 |
| AVJ49327.1 | MG925338_p64 | hypothetical protein | phrog_6656 | unknown function | unknown function | -1 | 55177 | 55407 |
| AVJ49319.1 | MG925338_p56 | RepA | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 48469 | 51075 |
| AVJ49305.1 | MG925338_p41 | hypothetical protein | phrog_892 | tail fiber protein | tail | 1 | 37615 | 38025 |
| AVJ49291.1 | MG925338_p27 | tail assembly chaperone | phrog_1118 | tail assembly chaperone | tail | 1 | 19791 | 20384 |
| AVJ49277.1 | MG925338_p13 | hypothetical protein | phrog_2069 | unknown function | unknown function | 1 | 10655 | 10861 |
| AVJ49330.1 | MG925338_p67 | hypothetical protein | phrog_996 | unknown function | unknown function | 1 | 56500 | 57267 |
| AVJ49349.1 | MG925338_p86 | hypothetical protein | phrog_7541 | unknown function | unknown function | -1 | 62197 | 62529 |
| AVJ49323.1 | MG925338_p60 | hypothetical protein | phrog_6936 | unknown function | unknown function | -1 | 53968 | 54105 |
| AVJ49318.1 | MG925338_p55 | hypothetical protein | phrog_1371 | unknown function | unknown function | -1 | 47953 | 48426 |
| AVJ49276.1 | MG925338_p12 | capsid morphogenesis protein | phrog_859 | portal protein | head and packaging | 1 | 8223 | 10655 |
| AVJ49271.1 | MG925338_p7 | hypothetical protein | phrog_6317 | unknown function | unknown function | -1 | 4612 | 4863 |
| AVJ49337.1 | MG925338_p74 | hypothetical protein | phrog_1306 | unknown function | unknown function | -1 | 59221 | 59391 |
| AVJ49338.1 | MG925338_p75 | hypothetical protein | phrog_6511 | unknown function | unknown function | 1 | 59410 | 59562 |
| AVJ49329.1 | MG925338_p66 | hypothetical protein | phrog_982 | unknown function | unknown function | -1 | 55831 | 56100 |
| AVJ49367.1 | MG925338_p51 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 45158 | 45427 |
| AVJ49267.1 | MG925338_p3 | hypothetical protein | phrog_6307 | unknown function | unknown function | 1 | 851 | 1072 |
| AVJ49364.1 | MG925338_p101 | hypothetical protein | phrog_6097 | unknown function | unknown function | 1 | 67870 | 68106 |
| AVJ49361.1 | MG925338_p98 | hypothetical protein | phrog_2972 | unknown function | unknown function | -1 | 67036 | 67266 |
| AVJ49288.1 | MG925338_p24 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 18491 | 19012 |
| AVJ49286.1 | MG925338_p22 | hypothetical protein | phrog_6514 | unknown function | unknown function | -1 | 17513 | 17623 |
| AVJ49344.1 | MG925338_p81 | hypothetical protein | phrog_4461 | unknown function | unknown function | -1 | 61273 | 61371 |
| AVJ49268.1 | MG925338_p4 | PAPS reductase | phrog_2302 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 1069 | 2151 |
| AVJ49303.1 | MG925338_p39 | hypothetical protein | phrog_915 | unknown function | unknown function | 1 | 36909 | 37277 |
| AVJ49308.1 | MG925338_p44 | helix-turn-helix DNA binding domain protein | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39039 | 39524 |
| AVJ49365.1 | MG925338_p102 | hypothetical protein | phrog_6432 | unknown function | unknown function | 1 | 68097 | 68252 |
| AVJ49273.1 | MG925338_p9 | hypothetical protein | phrog_6276 | unknown function | unknown function | -1 | 5563 | 5859 |
| AVJ49352.1 | MG925338_p89 | HicA-like toxin | phrog_2089 | unknown function | unknown function | -1 | 63092 | 63304 |
| AVJ49324.1 | MG925338_p61 | hypothetical protein | phrog_3025 | unknown function | unknown function | -1 | 54102 | 54548 |
| AVJ49284.1 | MG925338_p20 | hypothetical protein | phrog_2525 | unknown function | unknown function | 1 | 15952 | 16284 |
| AVJ49282.1 | MG925338_p18 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 15018 | 15479 |
| AVJ49311.1 | MG925338_p47 | lysin B | phrog_102 | endolysin | lysis | 1 | 41548 | 42612 |
| AVJ49343.1 | MG925338_p80 | HNH endonuclease | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 60951 | 61280 |
| AVJ49304.1 | MG925338_p40 | hypothetical protein | phrog_941 | unknown function | unknown function | 1 | 37361 | 37597 |
| AVJ49366.1 | MG925338_p103 | hypothetical protein | phrog_5930 | unknown function | unknown function | 1 | 68317 | 68619 |
| AVJ49325.1 | MG925338_p62 | hypothetical protein | phrog_993 | unknown function | unknown function | -1 | 54545 | 55021 |
| AVJ49332.1 | MG925338_p69 | hypothetical protein | phrog_6404 | unknown function | unknown function | 1 | 57548 | 57778 |
| AVJ49315.1 | MG925338_p52 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 45473 | 47170 |