| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG925344 |
Definition |
Mycobacterium phage Ichabod, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
53317 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
63.75 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVJ49861.1 | MG925344_p57 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39908 | 40432 |
| AVJ49807.1 | MG925344_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 600 | 752 |
| AVJ49850.1 | MG925344_p46 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 34878 | 35000 |
| AVJ49815.1 | MG925344_p9 | lysin B | phrog_102 | endolysin | lysis | 1 | 5749 | 6717 |
| AVJ49814.1 | MG925344_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4326 | 5759 |
| AVJ49863.1 | MG925344_p60 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 40930 | 41007 |
| AVJ49834.1 | MG925344_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23588 | 23920 |
| AVJ49851.1 | MG925344_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34997 | 35227 |
| AVJ49833.1 | MG925344_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23130 | 23576 |
| AVJ49855.1 | MG925344_p51 | helix-turn-helix DNA binding protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36307 | 37098 |
| AVJ49871.1 | MG925344_p68 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43383 | 43502 |
| AVJ49896.1 | MG925344_p93 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 52134 | 52232 |
| AVJ49852.1 | MG925344_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35270 | 35764 |
| AVJ49809.1 | MG925344_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1080 | 1520 |
| AVJ49828.1 | MG925344_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15567 | 16360 |
| AVJ49846.1 | MG925344_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31742 | 32035 |
| AVJ49898.1 | MG925344_p95 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 52720 | 52974 |
| AVJ49860.1 | MG925344_p56 | hypothetical protein | phrog_8843 | unknown function | unknown function | -1 | 39690 | 39911 |
| AVJ49879.1 | MG925344_p76 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46180 | 46575 |
| AVJ49841.1 | MG925344_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29148 | 29444 |
| AVJ49888.1 | MG925344_p85 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48819 | 48968 |
| AVJ49842.1 | MG925344_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29525 | 31093 |
| AVJ49836.1 | MG925344_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24289 | 26142 |
| AVJ49897.1 | MG925344_p94 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 52310 | 52639 |
| AVJ49840.1 | MG925344_p35 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 28224 | 29027 |
| AVJ49876.1 | MG925344_p73 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 45076 | 45654 |
| AVJ49844.1 | MG925344_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31483 | 31653 |
| AVJ49900.1 | MG925344_p58 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40278 | 40793 |
| AVJ49884.1 | MG925344_p81 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48153 | 48341 |
| AVJ49870.1 | MG925344_p67 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43213 | 43386 |
| AVJ49859.1 | MG925344_p55 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 39127 | 39693 |
| AVJ49822.1 | MG925344_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12707 | 12943 |
| AVJ49820.1 | MG925344_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11096 | 11608 |
| AVJ49832.1 | MG925344_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21290 | 23092 |
| AVJ49877.1 | MG925344_p74 | hypothetical protein | phrog_1311 | unknown function | unknown function | -1 | 45738 | 45875 |
| AVJ49869.1 | MG925344_p66 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42392 | 43213 |
| AVJ49821.1 | MG925344_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11618 | 12628 |
| AVJ49881.1 | MG925344_p78 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47391 | 47690 |
| AVJ49816.1 | MG925344_p10 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 6739 | 7011 |
| AVJ49878.1 | MG925344_p75 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 45875 | 46183 |
| AVJ49830.1 | MG925344_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19054 | 21111 |
| AVJ49874.1 | MG925344_p71 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44113 | 44295 |
| AVJ49831.1 | MG925344_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21108 | 21290 |
| AVJ49823.1 | MG925344_p17 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12943 | 13392 |
| AVJ49875.1 | MG925344_p72 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44322 | 45056 |
| AVJ49853.1 | MG925344_p49 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 35799 | 36131 |
| AVJ49890.1 | MG925344_p87 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49586 | 50257 |
| AVJ49847.1 | MG925344_p42 | hypothetical protein | phrog_9812 | unknown function | unknown function | -1 | 32032 | 32283 |
| AVJ49845.1 | MG925344_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31650 | 31736 |
| AVJ49829.1 | MG925344_p24 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16373 | 19030 |
| AVJ49887.1 | MG925344_p84 | hypothetical protein | phrog_9318 | unknown function | unknown function | -1 | 48630 | 48800 |
| AVJ49808.1 | MG925344_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 749 | 1045 |
| AVJ49826.1 | MG925344_p20 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 14153 | 14599 |
| AVJ49864.1 | MG925344_p61 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41004 | 41147 |
| AVJ49889.1 | MG925344_p86 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 48965 | 49282 |
| AVJ49886.1 | MG925344_p83 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48508 | 48633 |
| AVJ49811.1 | MG925344_p5 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3086 | 3787 |
| AVJ49810.1 | MG925344_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2006 | 3076 |
| AVJ49854.1 | MG925344_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36104 | 36310 |
| AVJ49817.1 | MG925344_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7032 | 8720 |
| AVJ49837.1 | MG925344_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26135 | 27613 |
| AVJ49891.1 | MG925344_p88 | hypothetical protein | phrog_4958 | unknown function | unknown function | -1 | 50262 | 50546 |
| AVJ49866.1 | MG925344_p63 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41642 | 41728 |
| AVJ49885.1 | MG925344_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48341 | 48511 |
| AVJ49893.1 | MG925344_p90 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 51183 | 51338 |
| AVJ49867.1 | MG925344_p64 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 41725 | 42033 |
| AVJ49901.1 | MG925344_p44 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 32676 | 33014 |
| AVJ49894.1 | MG925344_p91 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 51590 | 51778 |
| AVJ49856.1 | MG925344_p52 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37091 | 37231 |
| AVJ49827.1 | MG925344_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14608 | 15456 |
| AVJ49873.1 | MG925344_p70 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 43789 | 44109 |
| AVJ49868.1 | MG925344_p65 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42126 | 42392 |
| AVJ49865.1 | MG925344_p62 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41167 | 41655 |
| AVJ49835.1 | MG925344_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 23917 | 24264 |
| AVJ49825.1 | MG925344_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13754 | 14149 |
| AVJ49899.1 | MG925344_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15567 | 15938 |
| AVJ49819.1 | MG925344_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10156 | 11037 |
| AVJ49824.1 | MG925344_p18 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 13392 | 13754 |
| AVJ49883.1 | MG925344_p80 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47953 | 48156 |
| AVJ49872.1 | MG925344_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43499 | 43792 |
| AVJ49813.1 | MG925344_p7 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4069 | 4326 |
| AVJ49818.1 | MG925344_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8717 | 10159 |
| AVJ49848.1 | MG925344_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32319 | 32675 |
| AVJ49892.1 | MG925344_p89 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 50598 | 50882 |
| AVJ49862.1 | MG925344_p59 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40772 | 40921 |
| AVJ49812.1 | MG925344_p6 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3801 | 4061 |
| AVJ49849.1 | MG925344_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33011 | 34837 |
| AVJ49838.1 | MG925344_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27700 | 28026 |
| AVJ49858.1 | MG925344_p54 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38951 | 39130 |
| AVJ49882.1 | MG925344_p79 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47687 | 47956 |
| AVJ49880.1 | MG925344_p77 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46617 | 47129 |
| AVJ49843.1 | MG925344_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31214 | 31486 |
| AVJ49857.1 | MG925344_p53 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 37236 | 38954 |
| AVJ49839.1 | MG925344_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28036 | 28227 |
| AVJ49895.1 | MG925344_p92 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 51778 | 52137 |