| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG944220 |
Definition |
Mycobacterium phage Ruotula, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52601 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.44 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVJ51310.1 | MG944220_p51 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 37123 | 37305 |
| AVJ51313.1 | MG944220_p54 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 38231 | 38998 |
| AVJ51263.1 | MG944220_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1660 | 2100 |
| AVJ51295.1 | MG944220_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29698 | 29994 |
| AVJ51269.1 | MG944220_p9 | lysin B | phrog_102 | endolysin | lysis | 1 | 6208 | 7176 |
| AVJ51274.1 | MG944220_p14 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11843 | 12847 |
| AVJ51350.1 | MG944220_p92 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 51100 | 51789 |
| AVJ51331.1 | MG944220_p73 | helix-turn-helix DNA binding protein | phrog_2184 | unknown function | unknown function | -1 | 45130 | 45450 |
| AVJ51330.1 | MG944220_p72 | helix-turn-helix DNA binding protein | phrog_520 | unknown function | unknown function | -1 | 44840 | 45133 |
| AVJ51344.1 | MG944220_p86 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49696 | 49884 |
| AVJ51328.1 | MG944220_p70 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 44545 | 44718 |
| AVJ51268.1 | MG944220_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4785 | 6218 |
| AVJ51299.1 | MG944220_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32252 | 32449 |
| AVJ51290.1 | MG944220_p31 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26555 | 27592 |
| AVJ51347.1 | MG944220_p89 | hypothetical protein | phrog_9318 | unknown function | unknown function | -1 | 50170 | 50340 |
| AVJ51318.1 | MG944220_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41761 | 41904 |
| AVJ51301.1 | MG944220_p42 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32832 | 33002 |
| AVJ51341.1 | MG944220_p83 | hypothetical protein | phrog_6510 | unknown function | unknown function | -1 | 49198 | 49380 |
| AVJ51306.1 | MG944220_p47 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 34078 | 34572 |
| AVJ51284.1 | MG944220_p25 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21528 | 21710 |
| AVJ51311.1 | MG944220_p52 | helix-turn-helix DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 37302 | 38093 |
| AVJ51293.1 | MG944220_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28457 | 28648 |
| AVJ51352.1 | MG944220_p94 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 52015 | 52218 |
| AVJ51289.1 | MG944220_p30 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24709 | 26562 |
| AVJ51354.1 | MG944220_p58 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 41202 | 41618 |
| AVJ51338.1 | MG944220_p80 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48366 | 48665 |
| AVJ51270.1 | MG944220_p10 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7196 | 8884 |
| AVJ51288.1 | MG944220_p29 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 24337 | 24684 |
| AVJ51325.1 | MG944220_p67 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43348 | 44169 |
| AVJ51303.1 | MG944220_p44 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 33091 | 33384 |
| AVJ51282.1 | MG944220_p23 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16616 | 19450 |
| AVJ51308.1 | MG944220_p49 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 36374 | 36604 |
| AVJ51327.1 | MG944220_p69 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 44378 | 44545 |
| AVJ51337.1 | MG944220_p79 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47592 | 48104 |
| AVJ51296.1 | MG944220_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 30065 | 31648 |
| AVJ51285.1 | MG944220_p26 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21710 | 23512 |
| AVJ51264.1 | MG944220_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2465 | 3535 |
| AVJ51277.1 | MG944220_p17 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 13610 | 13972 |
| AVJ51276.1 | MG944220_p16 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13164 | 13610 |
| AVJ51353.1 | MG944220_p22 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15800 | 16186 |
| AVJ51335.1 | MG944220_p77 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 46835 | 47158 |
| AVJ51297.1 | MG944220_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31771 | 32043 |
| AVJ51279.1 | MG944220_p19 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 14371 | 14817 |
| AVJ51315.1 | MG944220_p56 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 39174 | 39803 |
| AVJ51287.1 | MG944220_p28 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 24008 | 24340 |
| AVJ51272.1 | MG944220_p12 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10320 | 11261 |
| AVJ51291.1 | MG944220_p32 | minor tail protein | phrog_16290 | minor tail protein | tail | 1 | 27615 | 28034 |
| AVJ51305.1 | MG944220_p46 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 33743 | 34057 |
| AVJ51281.1 | MG944220_p21 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15800 | 16602 |
| AVJ51319.1 | MG944220_p61 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41901 | 42152 |
| AVJ51294.1 | MG944220_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28645 | 29577 |
| AVJ51275.1 | MG944220_p15 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12928 | 13164 |
| AVJ51340.1 | MG944220_p82 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 48932 | 49201 |
| AVJ51271.1 | MG944220_p11 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8881 | 10323 |
| AVJ51323.1 | MG944220_p65 | hypothetical protein | phrog_4371 | unknown function | unknown function | -1 | 42952 | 43242 |
| AVJ51320.1 | MG944220_p62 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 42149 | 42625 |
| AVJ51261.1 | MG944220_p1 | HNH endonuclease | phrog_1271 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 698 | 1348 |
| AVJ51280.1 | MG944220_p20 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14826 | 15677 |
| AVJ51324.1 | MG944220_p66 | hypothetical protein | phrog_5742 | unknown function | unknown function | -1 | 43249 | 43347 |
| AVJ51336.1 | MG944220_p78 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 47155 | 47550 |
| AVJ51300.1 | MG944220_p41 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 32446 | 32835 |
| AVJ51267.1 | MG944220_p7 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4528 | 4785 |
| AVJ51266.1 | MG944220_p6 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4260 | 4520 |
| AVJ51329.1 | MG944220_p71 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 44715 | 44843 |
| AVJ51312.1 | MG944220_p53 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 38086 | 38226 |
| AVJ51342.1 | MG944220_p84 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49377 | 49577 |
| AVJ51314.1 | MG944220_p55 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38995 | 39177 |
| AVJ51298.1 | MG944220_p39 | hypothetical protein | phrog_23413 | restriction enzyme I | DNA, RNA and nucleotide metabolism | -1 | 32040 | 32255 |
| AVJ51322.1 | MG944220_p64 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42695 | 42952 |
| AVJ51317.1 | MG944220_p59 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 41597 | 41761 |
| AVJ51273.1 | MG944220_p13 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11321 | 11833 |
| AVJ51309.1 | MG944220_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 36635 | 37126 |
| AVJ51351.1 | MG944220_p93 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51803 | 51901 |
| AVJ51283.1 | MG944220_p24 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19474 | 21531 |
| AVJ51262.1 | MG944220_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1335 | 1625 |
| AVJ51334.1 | MG944220_p76 | hypothetical protein | phrog_13709 | unknown function | unknown function | -1 | 46623 | 46838 |
| AVJ51333.1 | MG944220_p75 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45796 | 46644 |
| AVJ51345.1 | MG944220_p87 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49884 | 50051 |
| AVJ51304.1 | MG944220_p45 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33381 | 33743 |
| AVJ51307.1 | MG944220_p48 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 34550 | 36337 |
| AVJ51332.1 | MG944220_p74 | helix-turn-helix DNA binding protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 45454 | 45636 |
| AVJ51346.1 | MG944220_p88 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 50048 | 50173 |
| AVJ51286.1 | MG944220_p27 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23550 | 23996 |
| AVJ51348.1 | MG944220_p90 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 50359 | 50508 |
| AVJ51292.1 | MG944220_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28127 | 28447 |
| AVJ51339.1 | MG944220_p81 | hypothetical protein | phrog_26295 | unknown function | unknown function | -1 | 48675 | 48935 |
| AVJ51326.1 | MG944220_p68 | hypothetical protein | phrog_5323 | unknown function | unknown function | -1 | 44172 | 44381 |
| AVJ51316.1 | MG944220_p57 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39800 | 41344 |
| AVJ51321.1 | MG944220_p63 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42612 | 42698 |
| AVJ51302.1 | MG944220_p43 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32999 | 33085 |
| AVJ51343.1 | MG944220_p85 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49574 | 49699 |
| AVJ51265.1 | MG944220_p5 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3545 | 4246 |
| AVJ51278.1 | MG944220_p18 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13972 | 14367 |
| AVJ51349.1 | MG944220_p91 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 50505 | 50822 |